RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 IGLC1P0CG04 106 aa10.11□□□□□ -0.79
CCDC88C-204ENST00000389857 MRPL36Q9P0J6 103 aaKnown RBP10.11□□□□□ -0.79
CCDC88C-204ENST00000389857 C8orf31Q8N9H6 132 aa10.11□□□□□ -0.79
CCDC88C-204ENST00000389857 Q9H8V8 135 aa10.11□□□□□ -0.79
CCDC88C-204ENST00000389857 LENEPQ9Y5L5 61 aa10.11□□□□□ -0.79
CCDC88C-204ENST00000389857 SPTBN2O15020 2390 aa10.1□□□□□ -0.79
CCDC88C-204ENST00000389857 ETDBQ3ZM63 59 aa10.1□□□□□ -0.79
CCDC88C-204ENST00000389857 GAGE12HA6NDE8 117 aa10.1□□□□□ -0.79
CCDC88C-204ENST00000389857 IGLV1-44P01699 117 aa10.1□□□□□ -0.79
CCDC88C-204ENST00000389857 DOCK8Q8NF50 2099 aa10.1□□□□□ -0.79
CCDC88C-204ENST00000389857 DUX4L9Q6RFH8 374 aaPredicted RBP10.1□□□□□ -0.79
CCDC88C-204ENST00000389857 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.1□□□□□ -0.79
CCDC88C-204ENST00000389857 IGKV2-29A2NJV5 120 aaPredicted RBP10.1□□□□□ -0.79
CCDC88C-204ENST00000389857 ZNF726P1Q15940 193 aa10.1□□□□□ -0.79
CCDC88C-204ENST00000389857 WDR86Q86TI4 376 aa10.1□□□□□ -0.79
CCDC88C-204ENST00000389857 CLPSL1A2RUU4 121 aa10.1□□□□□ -0.79
CCDC88C-204ENST00000389857 K7ERJ3 54 aa10.1□□□□□ -0.79
CCDC88C-204ENST00000389857 NDUFS6O75380 124 aaKnown RBP10.1□□□□□ -0.79
CCDC88C-204ENST00000389857 IGLL1P15814 213 aa10.1□□□□□ -0.79
CCDC88C-204ENST00000389857 CCL18P55774 89 aa10.1□□□□□ -0.79
CCDC88C-204ENST00000389857 DAZ2Q13117 558 aaKnown RBP10.1□□□□□ -0.79
CCDC88C-204ENST00000389857 C12orf74Q32Q52 190 aa10.1□□□□□ -0.79
CCDC88C-204ENST00000389857 DAZ4Q86SG3 579 aaKnown RBP10.1□□□□□ -0.79
CCDC88C-204ENST00000389857 DAZ3Q9NR90 486 aaKnown RBP10.1□□□□□ -0.79
CCDC88C-204ENST00000389857 C5orf47Q569G3 176 aa10.09□□□□□ -0.79
CCDC88C-204ENST00000389857 H3BMG7 143 aa10.09□□□□□ -0.79
CCDC88C-204ENST00000389857 K7EQD1 137 aa10.09□□□□□ -0.79
CCDC88C-204ENST00000389857 IGHV2-5P01817 119 aa10.09□□□□□ -0.79
CCDC88C-204ENST00000389857 CEP250Q9BV73 2442 aa10.09□□□□□ -0.79
CCDC88C-204ENST00000389857 KAAG1Q9UBP8 84 aa10.09□□□□□ -0.79
CCDC88C-204ENST00000389857 F6UB75 175 aa10.09□□□□□ -0.79
CCDC88C-204ENST00000389857 MRPL23Q16540 153 aaKnown RBP10.09□□□□□ -0.79
CCDC88C-204ENST00000389857 CAMK2N2Q96S95 79 aa10.09□□□□□ -0.79
CCDC88C-204ENST00000389857 SPTA1P02549 2419 aa10.09□□□□□ -0.79
CCDC88C-204ENST00000389857 PLXNA2O75051 1894 aa10.09□□□□□ -0.79
CCDC88C-204ENST00000389857 CFC1BP0CG36 223 aa10.09□□□□□ -0.79
CCDC88C-204ENST00000389857 CFC1P0CG37 223 aa10.09□□□□□ -0.79
CCDC88C-204ENST00000389857 EML6Q6ZMW3 1958 aa10.09□□□□□ -0.79
CCDC88C-204ENST00000389857 GNRH2O43555 120 aa10.08□□□□□ -0.8
CCDC88C-204ENST00000389857 FOXE3Q13461 319 aa10.08□□□□□ -0.8
CCDC88C-204ENST00000389857 KIAA1671Q9BY89 1806 aa10.08□□□□□ -0.8
CCDC88C-204ENST00000389857 C11orf52Q96A22 123 aa10.08□□□□□ -0.8
CCDC88C-204ENST00000389857 CEP290O15078 2479 aa10.08□□□□□ -0.8
CCDC88C-204ENST00000389857 DKK2Q9UBU2 259 aa10.08□□□□□ -0.8
CCDC88C-204ENST00000389857 POLEQ07864 2286 aa10.08□□□□□ -0.8
CCDC88C-204ENST00000389857 FRMPD3Q5JV73 1810 aa10.08□□□□□ -0.8
CCDC88C-204ENST00000389857 ETV2O00321 342 aaPredicted RBP10.08□□□□□ -0.8
CCDC88C-204ENST00000389857 DYNAPQ8N1N2 210 aa10.08□□□□□ -0.8
CCDC88C-204ENST00000389857 TRAV4A0A0B4J268 109 aa10.07□□□□□ -0.8
CCDC88C-204ENST00000389857 MP68P56378 58 aa10.07□□□□□ -0.8
CCDC88C-204ENST00000389857 COX7A2LO14548 114 aa10.07□□□□□ -0.8
CCDC88C-204ENST00000389857 SPART-AS1P0CW21 52 aa10.07□□□□□ -0.8
CCDC88C-204ENST00000389857 ZNF491Q8N8L2 437 aa10.07□□□□□ -0.8
CCDC88C-204ENST00000389857 CACNA1BQ00975 2339 aa10.07□□□□□ -0.8
CCDC88C-204ENST00000389857 FHL1Q13642 323 aa10.07□□□□□ -0.8
CCDC88C-204ENST00000389857 C9JQL5 133 aa10.07□□□□□ -0.8
CCDC88C-204ENST00000389857 IGHV4-4A0A075B6R2 117 aa10.07□□□□□ -0.8
CCDC88C-204ENST00000389857 DEFB112Q30KQ8 113 aa10.07□□□□□ -0.8
CCDC88C-204ENST00000389857 C4orf48Q5BLP8 95 aa10.07□□□□□ -0.8
CCDC88C-204ENST00000389857 GYPEP15421 78 aa10.06□□□□□ -0.8
CCDC88C-204ENST00000389857 WIPF2Q8TF74 440 aaPredicted RBP10.06□□□□□ -0.8
CCDC88C-204ENST00000389857 WIPF3A6NGB9 483 aa10.06□□□□□ -0.8
CCDC88C-204ENST00000389857 H0YGX0 51 aa10.06□□□□□ -0.8
CCDC88C-204ENST00000389857 IL15RAQ13261 267 aa10.06□□□□□ -0.8
CCDC88C-204ENST00000389857 NTN5Q8WTR8 489 aaPredicted RBP10.06□□□□□ -0.8
CCDC88C-204ENST00000389857 MED12Q93074 2177 aa10.05□□□□□ -0.8
CCDC88C-204ENST00000389857 WFDC9Q8NEX5 89 aa10.05□□□□□ -0.8
CCDC88C-204ENST00000389857 ATP6V0E2Q8NHE4 81 aa10.05□□□□□ -0.8
CCDC88C-204ENST00000389857 THSD7BQ9C0I4 1608 aa10.05□□□□□ -0.8
CCDC88C-204ENST00000389857 VSIG2Q96IQ7 327 aa10.05□□□□□ -0.8
CCDC88C-204ENST00000389857 IGHV4-59P01825 116 aa10.05□□□□□ -0.8
CCDC88C-204ENST00000389857 GP9P14770 177 aa10.05□□□□□ -0.8
CCDC88C-204ENST00000389857 COX7B2Q8TF08 81 aa10.05□□□□□ -0.8
CCDC88C-204ENST00000389857 TNRC6AQ8NDV7 1962 aaKnown RBP10.05□□□□□ -0.8
CCDC88C-204ENST00000389857 C10orf91Q5T1B1 145 aa10.04□□□□□ -0.8
CCDC88C-204ENST00000389857 UBE2AP49459 152 aa10.04□□□□□ -0.8
CCDC88C-204ENST00000389857 DIAPH2-AS1Q14236 149 aa10.04□□□□□ -0.8
CCDC88C-204ENST00000389857 Q6ZVH6 145 aa10.04□□□□□ -0.8
CCDC88C-204ENST00000389857 POU2AF1Q16633 256 aa10.04□□□□□ -0.8
CCDC88C-204ENST00000389857 C9orf47Q6ZRZ4 202 aa10.04□□□□□ -0.8
CCDC88C-204ENST00000389857 C5orf38Q86SI9 138 aa10.04□□□□□ -0.8
CCDC88C-204ENST00000389857 ABCA1O95477 2261 aa10.04□□□□□ -0.8
CCDC88C-204ENST00000389857 PROK2Q9HC23 129 aa10.04□□□□□ -0.8
CCDC88C-204ENST00000389857 IGLV2-23P01705 113 aa10.04□□□□□ -0.8
CCDC88C-204ENST00000389857 IGHV2-70P01814 119 aa10.04□□□□□ -0.8
CCDC88C-204ENST00000389857 ATP5G1P05496 136 aa10.04□□□□□ -0.8
CCDC88C-204ENST00000389857 PIFOQ8TCI5 191 aa10.03□□□□□ -0.8
CCDC88C-204ENST00000389857 DEFB113Q30KQ7 82 aa10.03□□□□□ -0.8
CCDC88C-204ENST00000389857 IGHV4-28A0A0C4DH34 117 aa10.03□□□□□ -0.8
CCDC88C-204ENST00000389857 NDUFC2O95298 119 aa10.03□□□□□ -0.8
CCDC88C-204ENST00000389857 TIMM17AQ99595 171 aa10.03□□□□□ -0.8
CCDC88C-204ENST00000389857 OPRPNQ99935 248 aaPredicted RBP10.03□□□□□ -0.8
CCDC88C-204ENST00000389857 RLFQ13129 1914 aa10.03□□□□□ -0.8
CCDC88C-204ENST00000389857 A0A1B0GX51 115 aa10.03□□□□□ -0.8
CCDC88C-204ENST00000389857 ZFP2Q6ZN57 461 aa10.03□□□□□ -0.8
CCDC88C-204ENST00000389857 C17orf77Q96MU5 243 aa10.03□□□□□ -0.8
CCDC88C-204ENST00000389857 TM2D2Q9BX73 214 aa10.03□□□□□ -0.8
CCDC88C-204ENST00000389857 K7EN84 100 aa10.02□□□□□ -0.8
CCDC88C-204ENST00000389857 APRG1Q8IVJ8 170 aa10.02□□□□□ -0.8
CCDC88C-204ENST00000389857 SND1-IT1Q9HBX3 110 aa10.02□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms