RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 CRYGSP22914 178 aa0.4□□□□□ -2.35
VPS13A-206ENST00000376646 FOXA3P55318 350 aaPredicted RBP0.4□□□□□ -2.35
VPS13A-206ENST00000376646 RPL37AP61513 92 aaKnown RBP0.4□□□□□ -2.35
VPS13A-206ENST00000376646 TOMM20LQ6UXN7 152 aa0.4□□□□□ -2.35
VPS13A-206ENST00000376646 Q86TA4 180 aa0.4□□□□□ -2.35
VPS13A-206ENST00000376646 TMEM35BQ8NCS4 154 aa0.4□□□□□ -2.35
VPS13A-206ENST00000376646 MORN4Q8NDC4 146 aa0.4□□□□□ -2.35
VPS13A-206ENST00000376646 NABP2Q9BQ15 211 aa0.4□□□□□ -2.35
VPS13A-206ENST00000376646 DDA1Q9BW61 102 aa0.4□□□□□ -2.35
VPS13A-206ENST00000376646 LPAR5Q9H1C0 372 aa0.4□□□□□ -2.35
VPS13A-206ENST00000376646 CBLN4Q9NTU7 201 aa0.4□□□□□ -2.35
VPS13A-206ENST00000376646 NDUFAF1Q9Y375 327 aa0.4□□□□□ -2.35
VPS13A-206ENST00000376646 ZCCHC6Q5VYS8 1495 aaKnown RBP0.4□□□□□ -2.35
VPS13A-206ENST00000376646 FER1L6Q2WGJ9 1857 aa0.4□□□□□ -2.35
VPS13A-206ENST00000376646 CEP250Q9BV73 2442 aa0.39□□□□□ -2.35
VPS13A-206ENST00000376646 CACNA1HO95180 2353 aa0.39□□□□□ -2.35
VPS13A-206ENST00000376646 CDK12Q9NYV4 1490 aaPredicted RBP0.39□□□□□ -2.35
VPS13A-206ENST00000376646 TRBV30A0A0K0K1B3 111 aa0.39□□□□□ -2.35
VPS13A-206ENST00000376646 LOC107986453A0A1B0GWG9 222 aa0.39□□□□□ -2.35
VPS13A-206ENST00000376646 ZNF727A8MUV8 499 aa0.39□□□□□ -2.35
VPS13A-206ENST00000376646 PDE6GP18545 87 aa0.39□□□□□ -2.35
VPS13A-206ENST00000376646 RPS3P23396 243 aaKnown RBP eCLIP0.39□□□□□ -2.35
VPS13A-206ENST00000376646 B2MP61769 119 aa0.39□□□□□ -2.35
VPS13A-206ENST00000376646 Q6ZQY7 126 aa0.39□□□□□ -2.35
VPS13A-206ENST00000376646 C5orf17Q8NAS9 161 aa0.39□□□□□ -2.35
VPS13A-206ENST00000376646 OR51A4Q8NGJ6 313 aa0.39□□□□□ -2.35
VPS13A-206ENST00000376646 OR9Q1Q8NGQ5 310 aa0.39□□□□□ -2.35
VPS13A-206ENST00000376646 AP1S3Q96PC3 154 aa0.39□□□□□ -2.35
VPS13A-206ENST00000376646 CIB3Q96Q77 187 aaPredicted RBP0.39□□□□□ -2.35
VPS13A-206ENST00000376646 MRPL40Q9NQ50 206 aaKnown RBP0.39□□□□□ -2.35
VPS13A-206ENST00000376646 KIAA1549LQ6ZVL6 1849 aa0.39□□□□□ -2.35
VPS13A-206ENST00000376646 TOP2BQ02880 1626 aa0.39□□□□□ -2.35
VPS13A-206ENST00000376646 ANK1P16157 1881 aa0.39□□□□□ -2.35
VPS13A-206ENST00000376646 FAM186AA6NE01 2351 aa0.39□□□□□ -2.35
VPS13A-206ENST00000376646 MUC4Q99102 2169 aa0.39□□□□□ -2.35
VPS13A-206ENST00000376646 A2MP01023 1474 aa0.39□□□□□ -2.35
VPS13A-206ENST00000376646 TRAV16A0A0A6YYK6 109 aaPredicted RBP0.39□□□□□ -2.35
VPS13A-206ENST00000376646 GNG14A0A1W2PPG7 69 aa0.39□□□□□ -2.35
VPS13A-206ENST00000376646 PRORSD1PA6NEY8 169 aa0.39□□□□□ -2.35
VPS13A-206ENST00000376646 TSTD3H0UI37 97 aa0.39□□□□□ -2.35
VPS13A-206ENST00000376646 SRP9P49458 86 aaKnown RBP0.39□□□□□ -2.35
VPS13A-206ENST00000376646 FGD6Q6ZV73 1430 aa0.39□□□□□ -2.35
VPS13A-206ENST00000376646 SIPA1L2Q9P2F8 1722 aaPredicted RBP0.39□□□□□ -2.35
VPS13A-206ENST00000376646 CEP290O15078 2479 aa0.38□□□□□ -2.35
VPS13A-206ENST00000376646 BBIP1A8MTZ0 92 aa0.38□□□□□ -2.35
VPS13A-206ENST00000376646 SLC25A4P12235 298 aa0.38□□□□□ -2.35
VPS13A-206ENST00000376646 CCL19Q99731 98 aa0.38□□□□□ -2.35
VPS13A-206ENST00000376646 SPTBP11277 2137 aa0.38□□□□□ -2.35
VPS13A-206ENST00000376646 BOD1L1Q8NFC6 3051 aa0.38□□□□□ -2.35
VPS13A-206ENST00000376646 ARL5CA6NH57 179 aa0.38□□□□□ -2.35
VPS13A-206ENST00000376646 EDF1O60869 148 aaKnown RBP0.38□□□□□ -2.35
VPS13A-206ENST00000376646 SULT1C4O75897 302 aa0.38□□□□□ -2.35
VPS13A-206ENST00000376646 BLCAPP62952 87 aa0.38□□□□□ -2.35
VPS13A-206ENST00000376646 QRFPP83859 136 aa0.38□□□□□ -2.35
VPS13A-206ENST00000376646 CSAG1Q6PB30 78 aa0.38□□□□□ -2.35
VPS13A-206ENST00000376646 IZUMO2Q6UXV1 221 aa0.38□□□□□ -2.35
VPS13A-206ENST00000376646 TCTEX1D1Q8N7M0 179 aa0.38□□□□□ -2.35
VPS13A-206ENST00000376646 NAT14Q8WUY8 206 aa0.38□□□□□ -2.35
VPS13A-206ENST00000376646 MPC1Q9Y5U8 109 aa0.38□□□□□ -2.35
VPS13A-206ENST00000376646 CTTNBP2Q8WZ74 1663 aa0.38□□□□□ -2.35
VPS13A-206ENST00000376646 LAMA2P24043 3122 aaKnown RBP0.38□□□□□ -2.35
VPS13A-206ENST00000376646 A0A1W2PPB8 328 aa0.37□□□□□ -2.35
VPS13A-206ENST00000376646 A0A1W2PRS3 328 aa0.37□□□□□ -2.35
VPS13A-206ENST00000376646 KIR3DP1A8MWS1 328 aa0.37□□□□□ -2.35
VPS13A-206ENST00000376646 J3KT08 172 aa0.37□□□□□ -2.35
VPS13A-206ENST00000376646 K7EIL1 84 aa0.37□□□□□ -2.35
VPS13A-206ENST00000376646 SPINT3P49223 89 aa0.37□□□□□ -2.35
VPS13A-206ENST00000376646 SNRPD3P62318 126 aaKnown RBP0.37□□□□□ -2.35
VPS13A-206ENST00000376646 C3orf62Q6ZUJ4 267 aa0.37□□□□□ -2.35
VPS13A-206ENST00000376646 KRTAP19-3Q7Z4W3 81 aa0.37□□□□□ -2.35
VPS13A-206ENST00000376646 TMEM229BQ8NBD8 167 aa0.37□□□□□ -2.35
VPS13A-206ENST00000376646 OR5A2Q8NGI9 324 aa0.37□□□□□ -2.35
VPS13A-206ENST00000376646 SKA2Q8WVK7 121 aaPredicted RBP0.37□□□□□ -2.35
VPS13A-206ENST00000376646 BCL9LQ86UU0 1499 aa0.37□□□□□ -2.35
VPS13A-206ENST00000376646 DSPPQ9NZW4 1301 aa0.37□□□□□ -2.35
VPS13A-206ENST00000376646 CELSR2Q9HCU4 2923 aa0.37□□□□□ -2.35
VPS13A-206ENST00000376646 PRRC2CQ9Y520 2896 aaKnown RBP0.37□□□□□ -2.35
VPS13A-206ENST00000376646 DNAH12Q6ZR08 3092 aa0.36□□□□□ -2.35
VPS13A-206ENST00000376646 CDC42EP2O14613 210 aa0.36□□□□□ -2.35
VPS13A-206ENST00000376646 IGHV3-30P01768 117 aa0.36□□□□□ -2.35
VPS13A-206ENST00000376646 HBDP02042 147 aa0.36□□□□□ -2.35
VPS13A-206ENST00000376646 IGHV3-30-5P0DP03 117 aa0.36□□□□□ -2.35
VPS13A-206ENST00000376646 RPL22P35268 128 aaKnown RBP0.36□□□□□ -2.35
VPS13A-206ENST00000376646 ETV6P41212 452 aa0.36□□□□□ -2.35
VPS13A-206ENST00000376646 GTF2A1P52655 376 aaPredicted RBP0.36□□□□□ -2.35
VPS13A-206ENST00000376646 DNAJB13P59910 316 aa0.36□□□□□ -2.35
VPS13A-206ENST00000376646 SPINK9Q5DT21 86 aa0.36□□□□□ -2.35
VPS13A-206ENST00000376646 C10orf111Q8N326 155 aa0.36□□□□□ -2.35
VPS13A-206ENST00000376646 GINS2Q9Y248 185 aa0.36□□□□□ -2.35
VPS13A-206ENST00000376646 HSPB11Q9Y547 144 aa0.36□□□□□ -2.35
VPS13A-206ENST00000376646 COL7A1Q02388 2944 aa0.36□□□□□ -2.35
VPS13A-206ENST00000376646 TGP01266 2768 aa0.36□□□□□ -2.35
VPS13A-206ENST00000376646 PIEZO2Q9H5I5 2752 aa0.36□□□□□ -2.35
VPS13A-206ENST00000376646 DSPP15924 2871 aaKnown RBP0.36□□□□□ -2.35
VPS13A-206ENST00000376646 OVOS2A0A0G2JMS6 1433 aa0.36□□□□□ -2.35
VPS13A-206ENST00000376646 XIRP1Q702N8 1843 aaKnown RBP0.36□□□□□ -2.35
VPS13A-206ENST00000376646 PHGR1C9JFL3 82 aa0.36□□□□□ -2.35
VPS13A-206ENST00000376646 TCRAP04437 139 aa0.36□□□□□ -2.35
VPS13A-206ENST00000376646 NBEAP1P0C6P0 100 aa0.36□□□□□ -2.35
VPS13A-206ENST00000376646 CCL4P13236 92 aa0.36□□□□□ -2.35
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms