RNA–Protein interactions for RNA: ENST00000357806.11

CLN3-203, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,469 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-203ENST00000357806 TMEM183AQ8IXX5 376 aa11.96□□□□□ -0.49
CLN3-203ENST00000357806 FMC1Q96HJ9 113 aa11.96□□□□□ -0.49
CLN3-203ENST00000357806 KCNS1Q96KK3 526 aa11.96□□□□□ -0.49
CLN3-203ENST00000357806 HYDINQ4G0P3 5121 aa11.96□□□□□ -0.5
CLN3-203ENST00000357806 TRGV2A0A075B6R0 118 aa11.95□□□□□ -0.5
CLN3-203ENST00000357806 PFN1P07737 140 aaKnown RBP11.95□□□□□ -0.5
CLN3-203ENST00000357806 ZNF80P51504 273 aaPredicted RBP11.95□□□□□ -0.5
CLN3-203ENST00000357806 LGALS9BQ3B8N2 356 aa11.95□□□□□ -0.5
CLN3-203ENST00000357806 C15orf53Q8NAA6 179 aa11.95□□□□□ -0.5
CLN3-203ENST00000357806 C18orf15Q96N68 181 aa11.95□□□□□ -0.5
CLN3-203ENST00000357806 SDF2L1Q9HCN8 221 aa11.95□□□□□ -0.5
CLN3-203ENST00000357806 MANBALQ9NQG1 85 aa11.95□□□□□ -0.5
CLN3-203ENST00000357806 MUC4Q99102 2169 aa11.95□□□□□ -0.5
CLN3-203ENST00000357806 TRAV1-1A0A0B4J248 108 aa11.95□□□□□ -0.5
CLN3-203ENST00000357806 AKR1C3P42330 323 aa11.95□□□□□ -0.5
CLN3-203ENST00000357806 MDFICQ9P1T7 246 aa11.95□□□□□ -0.5
CLN3-203ENST00000357806 TYMSP04818 313 aa11.94□□□□□ -0.5
CLN3-203ENST00000357806 P0DMU3 169 aa11.94□□□□□ -0.5
CLN3-203ENST00000357806 FAM231AP0DMU4 169 aa11.94□□□□□ -0.5
CLN3-203ENST00000357806 FAM231CP0DMU5 169 aa11.94□□□□□ -0.5
CLN3-203ENST00000357806 MRPL16Q9NX20 251 aaKnown RBP11.94□□□□□ -0.5
CLN3-203ENST00000357806 ZFP30Q9Y2G7 519 aa11.94□□□□□ -0.5
CLN3-203ENST00000357806 SPXQ9BT56 116 aa11.93□□□□□ -0.5
CLN3-203ENST00000357806 GNG13Q9P2W3 67 aa11.93□□□□□ -0.5
CLN3-203ENST00000357806 NACAE9PAV3 2078 aa11.92□□□□□ -0.5
CLN3-203ENST00000357806 KMT2AQ03164 3969 aa11.92□□□□□ -0.5
CLN3-203ENST00000357806 TRBV6-1A0A0K0K1D8 114 aa11.92□□□□□ -0.5
CLN3-203ENST00000357806 SCO2A0A1W2PP80 73 aa11.92□□□□□ -0.5
CLN3-203ENST00000357806 OR5I1Q13606 314 aa11.92□□□□□ -0.5
CLN3-203ENST00000357806 IGHV3-16A0A0C4DH30 117 aa11.91□□□□□ -0.5
CLN3-203ENST00000357806 GNRH2O43555 120 aa11.91□□□□□ -0.5
CLN3-203ENST00000357806 NKX2-5P52952 324 aaPredicted RBP11.91□□□□□ -0.5
CLN3-203ENST00000357806 CCL20P78556 96 aa11.91□□□□□ -0.5
CLN3-203ENST00000357806 FABP5P3A8MUU1 101 aa11.9□□□□□ -0.5
CLN3-203ENST00000357806 LTAP01374 205 aa11.9□□□□□ -0.5
CLN3-203ENST00000357806 IFNA1P01562 189 aa11.9□□□□□ -0.5
CLN3-203ENST00000357806 S100A9P06702 114 aaKnown RBP11.9□□□□□ -0.5
CLN3-203ENST00000357806 HOXA5P20719 270 aa11.9□□□□□ -0.5
CLN3-203ENST00000357806 COX8CQ7Z4L0 72 aa11.9□□□□□ -0.5
CLN3-203ENST00000357806 ZC2HC1AQ96GY0 325 aa11.9□□□□□ -0.5
CLN3-203ENST00000357806 TXNDC17Q9BRA2 123 aa11.9□□□□□ -0.5
CLN3-203ENST00000357806 C11orf21Q9P2W6 132 aa11.9□□□□□ -0.5
CLN3-203ENST00000357806 ALKAL2Q6UX46 152 aa11.89□□□□□ -0.51
CLN3-203ENST00000357806 UBE2DNLQ8IWF7 75 aa11.89□□□□□ -0.51
CLN3-203ENST00000357806 TRAV26-1A0A087WT03 109 aa11.89□□□□□ -0.51
CLN3-203ENST00000357806 M0R2P5 195 aa11.89□□□□□ -0.51
CLN3-203ENST00000357806 NUDT3O95989 172 aa11.89□□□□□ -0.51
CLN3-203ENST00000357806 RASL10AQ92737 203 aa11.89□□□□□ -0.51
CLN3-203ENST00000357806 VPS13DQ5THJ4 4388 aa11.88□□□□□ -0.51
CLN3-203ENST00000357806 FAM162BQ5T6X4 162 aa11.88□□□□□ -0.51
CLN3-203ENST00000357806 POM121L12Q8N7R1 296 aa11.88□□□□□ -0.51
CLN3-203ENST00000357806 A0A0J9YY99 117 aa11.87□□□□□ -0.51
CLN3-203ENST00000357806 H3BNG1 76 aa11.87□□□□□ -0.51
CLN3-203ENST00000357806 IGHV3-53P01767 116 aa11.87□□□□□ -0.51
CLN3-203ENST00000357806 MEF2BQ02080 365 aaPredicted RBP11.87□□□□□ -0.51
CLN3-203ENST00000357806 C11orf52Q96A22 123 aa11.87□□□□□ -0.51
CLN3-203ENST00000357806 IGKV3D-20A0A0C4DH25 116 aa11.86□□□□□ -0.51
CLN3-203ENST00000357806 SH2D1AO60880 128 aa11.86□□□□□ -0.51
CLN3-203ENST00000357806 BCL2P10415 239 aa11.86□□□□□ -0.51
CLN3-203ENST00000357806 TAGLN2P37802 199 aaKnown RBP11.86□□□□□ -0.51
CLN3-203ENST00000357806 RNF212Q495C1 297 aa11.86□□□□□ -0.51
CLN3-203ENST00000357806 BOLA1Q9Y3E2 137 aa11.86□□□□□ -0.51
CLN3-203ENST00000357806 DNAH6Q9C0G6 4158 aa11.85□□□□□ -0.51
CLN3-203ENST00000357806 B4DEV8 164 aa11.85□□□□□ -0.51
CLN3-203ENST00000357806 PDE6DO43924 150 aa11.85□□□□□ -0.51
CLN3-203ENST00000357806 ORM1P02763 201 aa11.85□□□□□ -0.51
CLN3-203ENST00000357806 S100A4P26447 101 aaKnown RBP11.85□□□□□ -0.51
CLN3-203ENST00000357806 CRIP1P50238 77 aa11.85□□□□□ -0.51
CLN3-203ENST00000357806 BLOC1S1P78537 153 aa11.85□□□□□ -0.51
CLN3-203ENST00000357806 ZNF674Q2M3X9 581 aa11.85□□□□□ -0.51
CLN3-203ENST00000357806 NHLRC2Q8NBF2 726 aa11.85□□□□□ -0.51
CLN3-203ENST00000357806 C9orf85Q96MD7 179 aa11.85□□□□□ -0.51
CLN3-203ENST00000357806 TRAV4A0A0B4J268 109 aa11.84□□□□□ -0.51
CLN3-203ENST00000357806 RNASE3P12724 160 aaKnown RBP11.84□□□□□ -0.51
CLN3-203ENST00000357806 ASIPP42127 132 aa11.84□□□□□ -0.51
CLN3-203ENST00000357806 RPL35P42766 123 aaKnown RBP11.84□□□□□ -0.51
CLN3-203ENST00000357806 SLAQ13239 276 aa11.84□□□□□ -0.51
CLN3-203ENST00000357806 BAGE2Q86Y30 109 aa11.84□□□□□ -0.51
CLN3-203ENST00000357806 VAX2Q9UIW0 290 aa11.84□□□□□ -0.51
CLN3-203ENST00000357806 TRGV4A0A0C4DH28 118 aa11.83□□□□□ -0.52
CLN3-203ENST00000357806 M0R036 132 aa11.83□□□□□ -0.52
CLN3-203ENST00000357806 ZNF876PQ49A33 203 aa11.83□□□□□ -0.52
CLN3-203ENST00000357806 MLST8Q9BVC4 326 aa11.83□□□□□ -0.52
CLN3-203ENST00000357806 PRO0255Q9UI72 69 aa11.83□□□□□ -0.52
CLN3-203ENST00000357806 KRBOX1C9JBD0 128 aa11.83□□□□□ -0.52
CLN3-203ENST00000357806 C9JCJ5 164 aa11.83□□□□□ -0.52
CLN3-203ENST00000357806 SFTA3P0C7M3 94 aa11.83□□□□□ -0.52
CLN3-203ENST00000357806 CCL18P55774 89 aa11.83□□□□□ -0.52
CLN3-203ENST00000357806 FHL2Q14192 279 aa11.83□□□□□ -0.52
CLN3-203ENST00000357806 LINC01559Q495D7 138 aa11.83□□□□□ -0.52
CLN3-203ENST00000357806 OR4C5Q8NGB2 326 aa11.83□□□□□ -0.52
CLN3-203ENST00000357806 VSIG2Q96IQ7 327 aa11.83□□□□□ -0.52
CLN3-203ENST00000357806 ZNF479Q96JC4 524 aa11.83□□□□□ -0.52
CLN3-203ENST00000357806 DERL1Q9BUN8 251 aa11.83□□□□□ -0.52
CLN3-203ENST00000357806 PAX4O43316 350 aa11.82□□□□□ -0.52
CLN3-203ENST00000357806 FAM3BP58499 235 aaPredicted RBP11.82□□□□□ -0.52
CLN3-203ENST00000357806 PTH2Q96A98 100 aa11.82□□□□□ -0.52
CLN3-203ENST00000357806 IL36BQ9NZH7 164 aa11.82□□□□□ -0.52
CLN3-203ENST00000357806 HHLA3Q9XRX5 114 aa11.82□□□□□ -0.52
CLN3-203ENST00000357806 CRYBA4P53673 196 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms