RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 IGHV4-4A0A075B6R2 117 aa16.51■□□□□ 0.23
SHMT1-202ENST00000352886 TMEM8BA6NDV4 472 aa16.51■□□□□ 0.23
SHMT1-202ENST00000352886 FCER1GP30273 86 aa16.51■□□□□ 0.23
SHMT1-202ENST00000352886 C12orf54Q6X4T0 127 aa16.51■□□□□ 0.23
SHMT1-202ENST00000352886 OR4C5Q8NGB2 326 aa16.51■□□□□ 0.23
SHMT1-202ENST00000352886 DPF1Q92782 380 aa16.51■□□□□ 0.23
SHMT1-202ENST00000352886 RHPN1-AS1Q9BWJ2 59 aa16.51■□□□□ 0.23
SHMT1-202ENST00000352886 TMEM95Q3KNT9 176 aa16.51■□□□□ 0.23
SHMT1-202ENST00000352886 SPOCK3Q9BQ16 436 aa16.51■□□□□ 0.23
SHMT1-202ENST00000352886 TCTAP57738 103 aa16.5■□□□□ 0.23
SHMT1-202ENST00000352886 CFHR3Q02985 330 aa16.5■□□□□ 0.23
SHMT1-202ENST00000352886 F6UB75 175 aa16.5■□□□□ 0.23
SHMT1-202ENST00000352886 C2orf91Q6ZV80 131 aa16.5■□□□□ 0.23
SHMT1-202ENST00000352886 Q8N8P6 123 aa16.5■□□□□ 0.23
SHMT1-202ENST00000352886 DAZ1Q9NQZ3 744 aaKnown RBP16.5■□□□□ 0.23
SHMT1-202ENST00000352886 DKK2Q9UBU2 259 aa16.49■□□□□ 0.23
SHMT1-202ENST00000352886 IGLV2-18A0A075B6J9 118 aa16.49■□□□□ 0.23
SHMT1-202ENST00000352886 TRAV21A0A0B4J279 112 aa16.49■□□□□ 0.23
SHMT1-202ENST00000352886 NRACQ8N912 160 aa16.49■□□□□ 0.23
SHMT1-202ENST00000352886 OR1N2Q8NGR9 330 aa16.49■□□□□ 0.23
SHMT1-202ENST00000352886 FGF6P10767 208 aa16.48■□□□□ 0.23
SHMT1-202ENST00000352886 GATA3P23771 443 aa16.48■□□□□ 0.23
SHMT1-202ENST00000352886 DSCR9P59020 149 aa16.48■□□□□ 0.23
SHMT1-202ENST00000352886 TMEM158Q8WZ71 300 aa16.48■□□□□ 0.23
SHMT1-202ENST00000352886 EDN2P20800 178 aa16.47■□□□□ 0.23
SHMT1-202ENST00000352886 IGHV4-59P01825 116 aa16.47■□□□□ 0.23
SHMT1-202ENST00000352886 SRD5A1P18405 259 aa16.47■□□□□ 0.23
SHMT1-202ENST00000352886 PEF1Q9UBV8 284 aaKnown RBP16.47■□□□□ 0.23
SHMT1-202ENST00000352886 ACACBO00763 2458 aa16.46■□□□□ 0.23
SHMT1-202ENST00000352886 DEFB112Q30KQ8 113 aa16.46■□□□□ 0.23
SHMT1-202ENST00000352886 FAM19A4Q96LR4 140 aa16.46■□□□□ 0.23
SHMT1-202ENST00000352886 M0R381 172 aa16.46■□□□□ 0.23
SHMT1-202ENST00000352886 SPRY2O43597 315 aa16.46■□□□□ 0.23
SHMT1-202ENST00000352886 S100A4P26447 101 aaKnown RBP16.46■□□□□ 0.23
SHMT1-202ENST00000352886 RNASE4P34096 147 aaKnown RBP16.46■□□□□ 0.23
SHMT1-202ENST00000352886 KIR3DS1Q14943 382 aa16.46■□□□□ 0.23
SHMT1-202ENST00000352886 SMPXQ9UHP9 88 aa16.46■□□□□ 0.23
SHMT1-202ENST00000352886 MYO18BQ8IUG5 2567 aa16.45■□□□□ 0.22
SHMT1-202ENST00000352886 CBY3A6NI87 242 aa16.45■□□□□ 0.22
SHMT1-202ENST00000352886 DEFB125Q8N687 156 aa16.45■□□□□ 0.22
SHMT1-202ENST00000352886 PRSS47A8MTI9 375 aa16.45■□□□□ 0.22
SHMT1-202ENST00000352886 SLC25A16P16260 332 aa16.45■□□□□ 0.22
SHMT1-202ENST00000352886 ANXA2RQ3ZCQ2 193 aa16.45■□□□□ 0.22
SHMT1-202ENST00000352886 PRSS1P07477 247 aa16.44■□□□□ 0.22
SHMT1-202ENST00000352886 LINC01356Q8N9X3 169 aa16.44■□□□□ 0.22
SHMT1-202ENST00000352886 TAX1BP3O14907 124 aa16.44■□□□□ 0.22
SHMT1-202ENST00000352886 ASIPP42127 132 aa16.44■□□□□ 0.22
SHMT1-202ENST00000352886 ODF1Q14990 250 aa16.44■□□□□ 0.22
SHMT1-202ENST00000352886 BOD1L2Q8IYS8 172 aa16.44■□□□□ 0.22
SHMT1-202ENST00000352886 CD5LO43866 347 aa16.43■□□□□ 0.22
SHMT1-202ENST00000352886 PSMB8P28062 276 aa16.43■□□□□ 0.22
SHMT1-202ENST00000352886 VAMP3Q15836 100 aa16.43■□□□□ 0.22
SHMT1-202ENST00000352886 VPS25Q9BRG1 176 aa16.43■□□□□ 0.22
SHMT1-202ENST00000352886 LAGE3Q14657 143 aa16.43■□□□□ 0.22
SHMT1-202ENST00000352886 C10orf99Q6UWK7 81 aa16.43■□□□□ 0.22
SHMT1-202ENST00000352886 MRAP2Q96G30 205 aa16.43■□□□□ 0.22
SHMT1-202ENST00000352886 SMIM17P0DL12 118 aa16.42■□□□□ 0.22
SHMT1-202ENST00000352886 NMUP48645 174 aa16.42■□□□□ 0.22
SHMT1-202ENST00000352886 ERASQ7Z444 233 aa16.42■□□□□ 0.22
SHMT1-202ENST00000352886 ZNF580Q9UK33 172 aa16.42■□□□□ 0.22
SHMT1-202ENST00000352886 PHLDA3Q9Y5J5 127 aa16.42■□□□□ 0.22
SHMT1-202ENST00000352886 K7EMT4 169 aa16.41■□□□□ 0.22
SHMT1-202ENST00000352886 APRG1Q8IVJ8 170 aa16.41■□□□□ 0.22
SHMT1-202ENST00000352886 MAPK1IP1LQ8NDC0 245 aa16.41■□□□□ 0.22
SHMT1-202ENST00000352886 ANKRD17O75179 2603 aaKnown RBP16.41■□□□□ 0.22
SHMT1-202ENST00000352886 PRB1P04280 392 aa16.4■□□□□ 0.22
SHMT1-202ENST00000352886 FOXC2Q99958 501 aa16.4■□□□□ 0.22
SHMT1-202ENST00000352886 GNRH2O43555 120 aa16.4■□□□□ 0.22
SHMT1-202ENST00000352886 PCP2Q8IVA1 136 aa16.4■□□□□ 0.22
SHMT1-202ENST00000352886 CST9LQ9H4G1 147 aa16.4■□□□□ 0.22
SHMT1-202ENST00000352886 ZMAT4Q9H898 229 aa16.4■□□□□ 0.22
SHMT1-202ENST00000352886 A0A096LNT2 108 aa16.39■□□□□ 0.21
SHMT1-202ENST00000352886 TRBV7-9A0A0J9YWB2 115 aa16.39■□□□□ 0.21
SHMT1-202ENST00000352886 TGFAP01135 160 aa16.39■□□□□ 0.21
SHMT1-202ENST00000352886 TMEM97Q5BJF2 176 aa16.39■□□□□ 0.21
SHMT1-202ENST00000352886 C14orf178Q8N769 122 aaPredicted RBP16.39■□□□□ 0.21
SHMT1-202ENST00000352886 OCIAD2Q56VL3 154 aa16.39■□□□□ 0.21
SHMT1-202ENST00000352886 DCANP1Q8TF63 244 aa16.39■□□□□ 0.21
SHMT1-202ENST00000352886 DPH3P1Q9H4G8 78 aa16.39■□□□□ 0.21
SHMT1-202ENST00000352886 ATP5LO75964 103 aa16.38■□□□□ 0.21
SHMT1-202ENST00000352886 SRSF1Q07955 248 aaKnown RBP eCLIP16.38■□□□□ 0.21
SHMT1-202ENST00000352886 HHLA3Q9XRX5 114 aa16.38■□□□□ 0.21
SHMT1-202ENST00000352886 SMIM2Q9BVW6 85 aa16.38■□□□□ 0.21
SHMT1-202ENST00000352886 FBN2P35556 2912 aa16.37■□□□□ 0.21
SHMT1-202ENST00000352886 A1L4Q6 167 aa16.37■□□□□ 0.21
SHMT1-202ENST00000352886 IGKCP01834 107 aa16.37■□□□□ 0.21
SHMT1-202ENST00000352886 MED14OSP0DP75 135 aa16.37■□□□□ 0.21
SHMT1-202ENST00000352886 RNASE3P12724 160 aaKnown RBP16.37■□□□□ 0.21
SHMT1-202ENST00000352886 ID1P41134 155 aa16.37■□□□□ 0.21
SHMT1-202ENST00000352886 OR9G4Q8NGQ1 327 aa16.37■□□□□ 0.21
SHMT1-202ENST00000352886 MYOZ3Q8TDC0 251 aa16.37■□□□□ 0.21
SHMT1-202ENST00000352886 USP9YO00507 2555 aaPredicted RBP16.37■□□□□ 0.21
SHMT1-202ENST00000352886 C7orf71A4D174 169 aa16.37■□□□□ 0.21
SHMT1-202ENST00000352886 RASL10AQ92737 203 aa16.36■□□□□ 0.21
SHMT1-202ENST00000352886 MUC4Q99102 2169 aa16.36■□□□□ 0.21
SHMT1-202ENST00000352886 ZANQ9Y493 2812 aa16.35■□□□□ 0.21
SHMT1-202ENST00000352886 KLLNB2CW77 178 aa16.35■□□□□ 0.21
SHMT1-202ENST00000352886 J3QLI3 93 aa16.35■□□□□ 0.21
SHMT1-202ENST00000352886 MGPP08493 103 aa16.35■□□□□ 0.21
SHMT1-202ENST00000352886 SUMO2P61956 95 aaKnown RBP16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms