RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 NDUFS5O43920 106 aa6.94□□□□□ -1.3
RTN3-202ENST00000339997 MRPL52Q86TS9 123 aaKnown RBP6.94□□□□□ -1.3
RTN3-202ENST00000339997 MSRB1Q9NZV6 116 aa6.94□□□□□ -1.3
RTN3-202ENST00000339997 XCL2Q9UBD3 114 aa6.94□□□□□ -1.3
RTN3-202ENST00000339997 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.94□□□□□ -1.3
RTN3-202ENST00000339997 RNF166Q96A37 237 aaPredicted RBP6.94□□□□□ -1.3
RTN3-202ENST00000339997 BPESC1Q9GZL8 116 aa6.94□□□□□ -1.3
RTN3-202ENST00000339997 SS18L2Q9UHA2 77 aa6.94□□□□□ -1.3
RTN3-202ENST00000339997 SAA4P35542 130 aa6.94□□□□□ -1.3
RTN3-202ENST00000339997 ATMQ13315 3056 aa6.94□□□□□ -1.3
RTN3-202ENST00000339997 C9orf153Q5TBE3 101 aa6.94□□□□□ -1.3
RTN3-202ENST00000339997 Q6ZS49 121 aa6.94□□□□□ -1.3
RTN3-202ENST00000339997 CEP295Q9C0D2 2601 aa6.93□□□□□ -1.3
RTN3-202ENST00000339997 TRBV19A0A075B6N1 114 aa6.93□□□□□ -1.3
RTN3-202ENST00000339997 OVOL1O14753 267 aa6.93□□□□□ -1.3
RTN3-202ENST00000339997 CT83Q5H943 113 aa6.93□□□□□ -1.3
RTN3-202ENST00000339997 SMIM2Q9BVW6 85 aa6.93□□□□□ -1.3
RTN3-202ENST00000339997 NDUFA4L2Q9NRX3 87 aa6.93□□□□□ -1.3
RTN3-202ENST00000339997 SPANXA1Q9NS26 97 aa6.93□□□□□ -1.3
RTN3-202ENST00000339997 PTPRSQ13332 1948 aa6.93□□□□□ -1.3
RTN3-202ENST00000339997 TRGV11A0A075B6L2 103 aa6.93□□□□□ -1.3
RTN3-202ENST00000339997 K7EP34 96 aa6.93□□□□□ -1.3
RTN3-202ENST00000339997 ANKRD39Q53RE8 183 aa6.93□□□□□ -1.3
RTN3-202ENST00000339997 OBSL1O75147 1896 aa6.93□□□□□ -1.3
RTN3-202ENST00000339997 ZNF106Q9H2Y7 1883 aaKnown RBP6.93□□□□□ -1.3
RTN3-202ENST00000339997 ATP6V0E1O15342 81 aa6.93□□□□□ -1.3
RTN3-202ENST00000339997 SDHAF1A6NFY7 115 aa6.93□□□□□ -1.3
RTN3-202ENST00000339997 DEFB131AP59861 70 aa6.93□□□□□ -1.3
RTN3-202ENST00000339997 PRR25Q96S07 402 aa6.93□□□□□ -1.3
RTN3-202ENST00000339997 ABCA12Q86UK0 2595 aa6.92□□□□□ -1.3
RTN3-202ENST00000339997 TINCRA0A1B0GVN0 87 aa6.92□□□□□ -1.3
RTN3-202ENST00000339997 ZNF561-AS1K7EIQ3 104 aa6.92□□□□□ -1.3
RTN3-202ENST00000339997 INAFM2P0DMQ5 153 aa6.92□□□□□ -1.3
RTN3-202ENST00000339997 PIP4P2Q8N4L2 257 aa6.92□□□□□ -1.3
RTN3-202ENST00000339997 RASL10AQ92737 203 aa6.92□□□□□ -1.3
RTN3-202ENST00000339997 C1QTNF4Q9BXJ3 329 aa6.92□□□□□ -1.3
RTN3-202ENST00000339997 NDUFS7O75251 213 aa6.92□□□□□ -1.3
RTN3-202ENST00000339997 PRB2P02812 416 aaPredicted RBP6.92□□□□□ -1.3
RTN3-202ENST00000339997 C17orf58Q2M2W7 97 aa6.92□□□□□ -1.3
RTN3-202ENST00000339997 NKAPP1Q8N9T2 125 aa6.92□□□□□ -1.3
RTN3-202ENST00000339997 MDS2Q8NDY4 140 aa6.92□□□□□ -1.3
RTN3-202ENST00000339997 KLHL30-AS1Q8NEE0 82 aa6.92□□□□□ -1.3
RTN3-202ENST00000339997 SMIM27A0A1W2PRY6 76 aa6.92□□□□□ -1.3
RTN3-202ENST00000339997 E7EQL1 145 aa6.92□□□□□ -1.3
RTN3-202ENST00000339997 HAMPP81172 84 aa6.92□□□□□ -1.3
RTN3-202ENST00000339997 SPRNQ5BIV9 151 aa6.92□□□□□ -1.3
RTN3-202ENST00000339997 NTN5Q8WTR8 489 aaPredicted RBP6.92□□□□□ -1.3
RTN3-202ENST00000339997 A0A096LPF7 62 aa6.92□□□□□ -1.3
RTN3-202ENST00000339997 CSRP1P21291 193 aaKnown RBP6.92□□□□□ -1.3
RTN3-202ENST00000339997 KLF5Q13887 457 aaPredicted RBP6.92□□□□□ -1.3
RTN3-202ENST00000339997 UBL5Q9BZL1 73 aa6.92□□□□□ -1.3
RTN3-202ENST00000339997 PIEZO1Q92508 2521 aa6.91□□□□□ -1.3
RTN3-202ENST00000339997 GAGE12JA6NER3 117 aa6.91□□□□□ -1.3
RTN3-202ENST00000339997 GAGE4Q13068 117 aa6.91□□□□□ -1.3
RTN3-202ENST00000339997 GAGE5Q13069 117 aa6.91□□□□□ -1.3
RTN3-202ENST00000339997 TAL2Q16559 108 aa6.91□□□□□ -1.3
RTN3-202ENST00000339997 LY6G5BQ8NDX9 201 aa6.91□□□□□ -1.3
RTN3-202ENST00000339997 BAALCQ8WXS3 180 aa6.91□□□□□ -1.3
RTN3-202ENST00000339997 FXYD5Q96DB9 178 aa6.91□□□□□ -1.3
RTN3-202ENST00000339997 FGF23Q9GZV9 251 aaPredicted RBP6.91□□□□□ -1.3
RTN3-202ENST00000339997 LRRK2Q5S007 2527 aa6.91□□□□□ -1.3
RTN3-202ENST00000339997 IGLC7A0M8Q6 106 aa6.91□□□□□ -1.3
RTN3-202ENST00000339997 WFDC2Q14508 124 aa6.91□□□□□ -1.3
RTN3-202ENST00000339997 PLEKHB2Q96CS7 222 aa6.91□□□□□ -1.3
RTN3-202ENST00000339997 CFPP27918 469 aa6.91□□□□□ -1.3
RTN3-202ENST00000339997 FOXL2NBQ6ZUU3 175 aa6.91□□□□□ -1.3
RTN3-202ENST00000339997 ZNF747Q9BV97 191 aa6.91□□□□□ -1.3
RTN3-202ENST00000339997 EGR2P11161 476 aaPredicted RBP6.9□□□□□ -1.3
RTN3-202ENST00000339997 SEC61GP60059 68 aa6.9□□□□□ -1.3
RTN3-202ENST00000339997 C9orf139Q6ZV77 190 aa6.9□□□□□ -1.3
RTN3-202ENST00000339997 MYMXA0A1B0GTQ4 84 aa6.9□□□□□ -1.3
RTN3-202ENST00000339997 DEFB1P60022 68 aa6.9□□□□□ -1.3
RTN3-202ENST00000339997 LYPD6BQ8NI32 183 aa6.9□□□□□ -1.3
RTN3-202ENST00000339997 IGLV3-9A0A075B6K5 115 aa6.9□□□□□ -1.3
RTN3-202ENST00000339997 GNRH2O43555 120 aa6.9□□□□□ -1.3
RTN3-202ENST00000339997 ATP6V0BQ99437 205 aa6.9□□□□□ -1.3
RTN3-202ENST00000339997 SOCS3O14543 225 aa6.9□□□□□ -1.31
RTN3-202ENST00000339997 FOXE3Q13461 319 aa6.9□□□□□ -1.31
RTN3-202ENST00000339997 SS18Q15532 418 aa6.9□□□□□ -1.31
RTN3-202ENST00000339997 C12orf74Q32Q52 190 aa6.9□□□□□ -1.31
RTN3-202ENST00000339997 CLPSL2Q6UWE3 100 aa6.9□□□□□ -1.31
RTN3-202ENST00000339997 NBEAQ8NFP9 2946 aa6.89□□□□□ -1.31
RTN3-202ENST00000339997 KIR2DL5BA0A0G2JN68 375 aa6.89□□□□□ -1.31
RTN3-202ENST00000339997 KIR2DL5BA0A0G2JPC4 375 aa6.89□□□□□ -1.31
RTN3-202ENST00000339997 hADV29S1A0JD25 119 aa6.89□□□□□ -1.31
RTN3-202ENST00000339997 C15orf65H3BRN8 121 aa6.89□□□□□ -1.31
RTN3-202ENST00000339997 C4orf48Q5BLP8 95 aa6.89□□□□□ -1.31
RTN3-202ENST00000339997 KIR2DL5AQ8N109 375 aa6.89□□□□□ -1.31
RTN3-202ENST00000339997 TRAV25A0A0B4J276 109 aa6.89□□□□□ -1.31
RTN3-202ENST00000339997 LMO1P25800 156 aa6.89□□□□□ -1.31
RTN3-202ENST00000339997 SMIM20Q8N5G0 67 aa6.89□□□□□ -1.31
RTN3-202ENST00000339997 RMI2Q96E14 147 aa6.89□□□□□ -1.31
RTN3-202ENST00000339997 THSD7BQ9C0I4 1608 aa6.89□□□□□ -1.31
RTN3-202ENST00000339997 K7ERS5 55 aa6.89□□□□□ -1.31
RTN3-202ENST00000339997 ZNF883P0CG24 379 aa6.89□□□□□ -1.31
RTN3-202ENST00000339997 PRR20EP86478 221 aa6.89□□□□□ -1.31
RTN3-202ENST00000339997 PRR20CP86479 221 aa6.89□□□□□ -1.31
RTN3-202ENST00000339997 PRR20DP86480 221 aa6.89□□□□□ -1.31
RTN3-202ENST00000339997 PRR20BP86481 221 aa6.89□□□□□ -1.31
RTN3-202ENST00000339997 PRR20AP86496 221 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 107.9 ms