RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 RBAKDNA6NC62 111 aa8.69□□□□□ -1.02
CUX1-202ENST00000292538 HOXD3P31249 432 aaPredicted RBP8.69□□□□□ -1.02
CUX1-202ENST00000292538 SLURP1P55000 103 aa8.69□□□□□ -1.02
CUX1-202ENST00000292538 ZNF575Q86XF7 245 aa8.69□□□□□ -1.02
CUX1-202ENST00000292538 FBLL1A6NHQ2 334 aaKnown RBP8.68□□□□□ -1.02
CUX1-202ENST00000292538 SPATA12Q7Z6I5 190 aa8.68□□□□□ -1.02
CUX1-202ENST00000292538 KLHDC1Q8N7A1 406 aa8.68□□□□□ -1.02
CUX1-202ENST00000292538 OR8A1Q8NGG7 326 aa8.68□□□□□ -1.02
CUX1-202ENST00000292538 TRAV12-2A0A075B6T6 113 aa8.68□□□□□ -1.02
CUX1-202ENST00000292538 GNRH2O43555 120 aa8.68□□□□□ -1.02
CUX1-202ENST00000292538 NPYP01303 97 aa8.68□□□□□ -1.02
CUX1-202ENST00000292538 PLA2G2AP14555 144 aa8.68□□□□□ -1.02
CUX1-202ENST00000292538 C9orf47Q6ZRZ4 202 aa8.68□□□□□ -1.02
CUX1-202ENST00000292538 KRTAP1-3Q8IUG1 177 aa8.68□□□□□ -1.02
CUX1-202ENST00000292538 MS4A6AQ9H2W1 248 aa8.68□□□□□ -1.02
CUX1-202ENST00000292538 Q8N976 141 aa8.67□□□□□ -1.02
CUX1-202ENST00000292538 YAE1D1Q9NRH1 226 aa8.67□□□□□ -1.02
CUX1-202ENST00000292538 SIGLEC8Q9NYZ4 499 aa8.67□□□□□ -1.02
CUX1-202ENST00000292538 HIVEP2P31629 2446 aa8.67□□□□□ -1.02
CUX1-202ENST00000292538 IGLC6P0CF74 106 aa8.67□□□□□ -1.02
CUX1-202ENST00000292538 CR1P17927 2039 aa8.67□□□□□ -1.02
CUX1-202ENST00000292538 DNLZQ5SXM8 178 aa8.67□□□□□ -1.02
CUX1-202ENST00000292538 TMEM70Q9BUB7 260 aa8.67□□□□□ -1.02
CUX1-202ENST00000292538 AGRNO00468 2067 aa8.67□□□□□ -1.02
CUX1-202ENST00000292538 A0A1B0GW15 77 aa8.67□□□□□ -1.02
CUX1-202ENST00000292538 OR5AL1P0C617 328 aa8.67□□□□□ -1.02
CUX1-202ENST00000292538 LINC01559Q495D7 138 aa8.67□□□□□ -1.02
CUX1-202ENST00000292538 TEX43Q6ZNM6 134 aa8.67□□□□□ -1.02
CUX1-202ENST00000292538 REC114Q7Z4M0 266 aa8.67□□□□□ -1.02
CUX1-202ENST00000292538 DPF1Q92782 380 aa8.67□□□□□ -1.02
CUX1-202ENST00000292538 TRAV12-3A0A0B4J271 114 aa8.66□□□□□ -1.02
CUX1-202ENST00000292538 SOCS3O14543 225 aa8.66□□□□□ -1.02
CUX1-202ENST00000292538 OVOL1O14753 267 aa8.66□□□□□ -1.02
CUX1-202ENST00000292538 RAB4AP20338 218 aa8.66□□□□□ -1.02
CUX1-202ENST00000292538 ID1P41134 155 aa8.66□□□□□ -1.02
CUX1-202ENST00000292538 ANXA2RQ3ZCQ2 193 aa8.66□□□□□ -1.02
CUX1-202ENST00000292538 OR11H1Q8NG94 326 aa8.66□□□□□ -1.02
CUX1-202ENST00000292538 LINC00477Q96M19 166 aa8.66□□□□□ -1.02
CUX1-202ENST00000292538 C18orf15Q96N68 181 aa8.66□□□□□ -1.02
CUX1-202ENST00000292538 ATP6V0BQ99437 205 aa8.66□□□□□ -1.02
CUX1-202ENST00000292538 C2orf70A6NJV1 201 aa8.66□□□□□ -1.02
CUX1-202ENST00000292538 CTRLP40313 264 aa8.66□□□□□ -1.02
CUX1-202ENST00000292538 SMIM15Q7Z3B0 74 aa8.66□□□□□ -1.02
CUX1-202ENST00000292538 LRRC75A-AS1Q8N1F1 130 aa8.66□□□□□ -1.02
CUX1-202ENST00000292538 ZFAND2AQ8N6M9 145 aa8.66□□□□□ -1.02
CUX1-202ENST00000292538 CHCHD1Q96BP2 118 aaKnown RBP8.66□□□□□ -1.02
CUX1-202ENST00000292538 NDUFAF3Q9BU61 184 aa8.66□□□□□ -1.02
CUX1-202ENST00000292538 TP73-AS1Q9UF72 201 aa8.66□□□□□ -1.02
CUX1-202ENST00000292538 CBY1Q9Y3M2 126 aa8.65□□□□□ -1.02
CUX1-202ENST00000292538 PHLDA3Q9Y5J5 127 aa8.65□□□□□ -1.02
CUX1-202ENST00000292538 hDV102S1A0JD36 115 aa8.65□□□□□ -1.03
CUX1-202ENST00000292538 LGALS1P09382 135 aaKnown RBP8.65□□□□□ -1.03
CUX1-202ENST00000292538 TCTEX1D4Q5JR98 221 aa8.65□□□□□ -1.03
CUX1-202ENST00000292538 MRPL53Q96EL3 112 aaKnown RBP8.65□□□□□ -1.03
CUX1-202ENST00000292538 MAP1LC3CQ9BXW4 147 aa8.65□□□□□ -1.03
CUX1-202ENST00000292538 JMJD1CQ15652 2540 aa8.65□□□□□ -1.03
CUX1-202ENST00000292538 TRAV21A0A0B4J279 112 aa8.64□□□□□ -1.03
CUX1-202ENST00000292538 A0A1B0GV90 55 aa8.64□□□□□ -1.03
CUX1-202ENST00000292538 OR4C46A6NHA9 309 aa8.64□□□□□ -1.03
CUX1-202ENST00000292538 EREGO14944 169 aa8.64□□□□□ -1.03
CUX1-202ENST00000292538 MGPP08493 103 aa8.64□□□□□ -1.03
CUX1-202ENST00000292538 ZNF493Q6ZR52 646 aa8.64□□□□□ -1.03
CUX1-202ENST00000292538 COX8CQ7Z4L0 72 aa8.64□□□□□ -1.03
CUX1-202ENST00000292538 KLHL30-AS1Q8NEE0 82 aa8.64□□□□□ -1.03
CUX1-202ENST00000292538 SMR3AQ99954 134 aa8.64□□□□□ -1.03
CUX1-202ENST00000292538 SYS1-DBNDD2H3BUS1 97 aa8.64□□□□□ -1.03
CUX1-202ENST00000292538 FSHBP01225 129 aa8.64□□□□□ -1.03
CUX1-202ENST00000292538 SNRPD3P62318 126 aaKnown RBP8.64□□□□□ -1.03
CUX1-202ENST00000292538 C14orf178Q8N769 122 aaPredicted RBP8.64□□□□□ -1.03
CUX1-202ENST00000292538 DCANP1Q8TF63 244 aa8.64□□□□□ -1.03
CUX1-202ENST00000292538 PSMG3-AS1Q96PY0 264 aa8.64□□□□□ -1.03
CUX1-202ENST00000292538 ELANEP08246 267 aa8.64□□□□□ -1.03
CUX1-202ENST00000292538 SPINK13Q1W4C9 94 aa8.64□□□□□ -1.03
CUX1-202ENST00000292538 Q6ZN92 141 aa8.64□□□□□ -1.03
CUX1-202ENST00000292538 RNF185Q96GF1 192 aa8.64□□□□□ -1.03
CUX1-202ENST00000292538 TMEM191AQ9H0A3 160 aa8.64□□□□□ -1.03
CUX1-202ENST00000292538 KIR2DL5BA0A0G2JN68 375 aa8.63□□□□□ -1.03
CUX1-202ENST00000292538 KIR2DL5BA0A0G2JPC4 375 aa8.63□□□□□ -1.03
CUX1-202ENST00000292538 ASIPP42127 132 aa8.63□□□□□ -1.03
CUX1-202ENST00000292538 DMRTA1Q5VZB9 504 aa8.63□□□□□ -1.03
CUX1-202ENST00000292538 KIR2DL5AQ8N109 375 aa8.63□□□□□ -1.03
CUX1-202ENST00000292538 UBE2E2Q96LR5 201 aa8.63□□□□□ -1.03
CUX1-202ENST00000292538 HSPB8Q9UJY1 196 aa8.63□□□□□ -1.03
CUX1-202ENST00000292538 DNAJC9-AS1A6NH13 148 aa8.62□□□□□ -1.03
CUX1-202ENST00000292538 K7EMT4 169 aa8.62□□□□□ -1.03
CUX1-202ENST00000292538 TNFRSF6BO95407 300 aa8.62□□□□□ -1.03
CUX1-202ENST00000292538 BRI3O95415 125 aa8.62□□□□□ -1.03
CUX1-202ENST00000292538 CD7P09564 240 aa8.62□□□□□ -1.03
CUX1-202ENST00000292538 FAM159AQ6UWV7 190 aa8.62□□□□□ -1.03
CUX1-202ENST00000292538 PDZD2O15018 2839 aa8.62□□□□□ -1.03
CUX1-202ENST00000292538 FN1P02751 2386 aaKnown RBP8.62□□□□□ -1.03
CUX1-202ENST00000292538 KNCNA6PVL3 124 aa8.62□□□□□ -1.03
CUX1-202ENST00000292538 SNAI2O43623 268 aa8.62□□□□□ -1.03
CUX1-202ENST00000292538 TCF21O43680 179 aa8.62□□□□□ -1.03
CUX1-202ENST00000292538 SRSF2Q01130 221 aaKnown RBP8.62□□□□□ -1.03
CUX1-202ENST00000292538 MIEN1Q9BRT3 115 aa8.62□□□□□ -1.03
CUX1-202ENST00000292538 MAP1LC3AQ9H492 121 aa8.62□□□□□ -1.03
CUX1-202ENST00000292538 C20orf202A1L168 122 aa8.61□□□□□ -1.03
CUX1-202ENST00000292538 TCAPO15273 167 aa8.61□□□□□ -1.03
CUX1-202ENST00000292538 IGLL1P15814 213 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms