RNA–Protein interactions for RNA: ENST00000269397.8

CBX4-201, Transcript of chromobox 4, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CBX4, Length 2,664 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4-201ENST00000269397 SMIM2Q9BVW6 85 aa20.98■□□□□ 0.95
CBX4-201ENST00000269397 PLNP26678 52 aa20.97■□□□□ 0.95
CBX4-201ENST00000269397 ETDBQ3ZM63 59 aa20.97■□□□□ 0.95
CBX4-201ENST00000269397 RPL39LQ96EH5 51 aaKnown RBP20.97■□□□□ 0.95
CBX4-201ENST00000269397 C11orf71Q6IPW1 123 aa20.96■□□□□ 0.95
CBX4-201ENST00000269397 C20orf173Q96LM9 149 aa20.96■□□□□ 0.95
CBX4-201ENST00000269397 SIRPDQ9H106 197 aa20.96■□□□□ 0.95
CBX4-201ENST00000269397 PRSS47A8MTI9 375 aa20.96■□□□□ 0.95
CBX4-201ENST00000269397 HLA-DRB4P13762 266 aa20.96■□□□□ 0.95
CBX4-201ENST00000269397 SAMD13Q5VXD3 122 aa20.96■□□□□ 0.95
CBX4-201ENST00000269397 C9orf47Q6ZRZ4 202 aa20.96■□□□□ 0.95
CBX4-201ENST00000269397 C1orf122Q6ZSJ8 110 aa20.96■□□□□ 0.95
CBX4-201ENST00000269397 SCGB3A1Q96QR1 104 aa20.96■□□□□ 0.95
CBX4-201ENST00000269397 SPANXB1Q9NS25 103 aaPredicted RBP20.96■□□□□ 0.95
CBX4-201ENST00000269397 HLA-DRB4X5D2U9 266 aa20.96■□□□□ 0.95
CBX4-201ENST00000269397 AJUBAQ96IF1 538 aa20.95■□□□□ 0.94
CBX4-201ENST00000269397 CYSLTR1Q9Y271 337 aa20.95■□□□□ 0.94
CBX4-201ENST00000269397 TSSC4Q9Y5U2 329 aaPredicted RBP20.95■□□□□ 0.94
CBX4-201ENST00000269397 F8VRH5 84 aa20.95■□□□□ 0.94
CBX4-201ENST00000269397 H7C1H1 209 aa20.95■□□□□ 0.94
CBX4-201ENST00000269397 SAA4P35542 130 aa20.95■□□□□ 0.94
CBX4-201ENST00000269397 DEFB104AQ8WTQ1 72 aa20.95■□□□□ 0.94
CBX4-201ENST00000269397 HIF1ANQ9NWT6 349 aa20.95■□□□□ 0.94
CBX4-201ENST00000269397 AZU1P20160 251 aa20.94■□□□□ 0.94
CBX4-201ENST00000269397 EEF1AKMT3Q96AZ1 226 aa20.94■□□□□ 0.94
CBX4-201ENST00000269397 CHTOPQ9Y3Y2 248 aaKnown RBP20.94■□□□□ 0.94
CBX4-201ENST00000269397 SMAGPQ0VAQ4 97 aa20.94■□□□□ 0.94
CBX4-201ENST00000269397 C14orf178Q8N769 122 aaPredicted RBP20.94■□□□□ 0.94
CBX4-201ENST00000269397 IGF2RP11717 2491 aa20.94■□□□□ 0.94
CBX4-201ENST00000269397 OR11H12B2RN74 326 aa20.93■□□□□ 0.94
CBX4-201ENST00000269397 FBXL19-AS1Q494R0 122 aa20.93■□□□□ 0.94
CBX4-201ENST00000269397 TMEM219Q86XT9 240 aa20.93■□□□□ 0.94
CBX4-201ENST00000269397 OR11H1Q8NG94 326 aa20.93■□□□□ 0.94
CBX4-201ENST00000269397 OR11H2Q8NH07 326 aa20.93■□□□□ 0.94
CBX4-201ENST00000269397 FOXC1Q12948 553 aa20.92■□□□□ 0.94
CBX4-201ENST00000269397 RASL10AQ92737 203 aa20.92■□□□□ 0.94
CBX4-201ENST00000269397 TRBV7-3A0A075B6L6 115 aa20.92■□□□□ 0.94
CBX4-201ENST00000269397 IGHV4-4A0A075B6R2 117 aa20.92■□□□□ 0.94
CBX4-201ENST00000269397 F8W1H4 67 aa20.91■□□□□ 0.94
CBX4-201ENST00000269397 SUMO2P61956 95 aaKnown RBP20.91■□□□□ 0.94
CBX4-201ENST00000269397 TAL2Q16559 108 aa20.91■□□□□ 0.94
CBX4-201ENST00000269397 MYMXA0A1B0GTQ4 84 aa20.91■□□□□ 0.94
CBX4-201ENST00000269397 MGPP08493 103 aa20.9■□□□□ 0.94
CBX4-201ENST00000269397 S100A4P26447 101 aaKnown RBP20.9■□□□□ 0.94
CBX4-201ENST00000269397 ADORA2A-AS1P86434 159 aa20.9■□□□□ 0.94
CBX4-201ENST00000269397 MRAP2Q96G30 205 aa20.9■□□□□ 0.94
CBX4-201ENST00000269397 RRN3P1Q2M238 152 aa20.9■□□□□ 0.94
CBX4-201ENST00000269397 K7ENP7 123 aa20.89■□□□□ 0.93
CBX4-201ENST00000269397 INSL3P51460 131 aa20.89■□□□□ 0.93
CBX4-201ENST00000269397 A0A1W2PPR1 153 aa20.88■□□□□ 0.93
CBX4-201ENST00000269397 SFTA2Q6UW10 78 aa20.88■□□□□ 0.93
CBX4-201ENST00000269397 SPAG8Q99932 426 aaPredicted RBP20.88■□□□□ 0.93
CBX4-201ENST00000269397 TRAV12-1A0A0B4J245 112 aa20.88■□□□□ 0.93
CBX4-201ENST00000269397 NEXN-AS1Q8NBZ9 246 aa20.88■□□□□ 0.93
CBX4-201ENST00000269397 GLMPQ8WWB7 406 aa20.88■□□□□ 0.93
CBX4-201ENST00000269397 TOMM6Q96B49 74 aa20.88■□□□□ 0.93
CBX4-201ENST00000269397 MRPL53Q96EL3 112 aaKnown RBP20.88■□□□□ 0.93
CBX4-201ENST00000269397 VPS13CQ709C8 3753 aa20.88■□□□□ 0.93
CBX4-201ENST00000269397 IGKV3-7A0A075B6H7 116 aa20.87■□□□□ 0.93
CBX4-201ENST00000269397 TRBV7-1A0A0A6YYK4 115 aa20.87■□□□□ 0.93
CBX4-201ENST00000269397 GAGE12HA6NDE8 117 aa20.87■□□□□ 0.93
CBX4-201ENST00000269397 ATP5G2Q06055 141 aa20.87■□□□□ 0.93
CBX4-201ENST00000269397 SIGMAR1Q99720 223 aa20.87■□□□□ 0.93
CBX4-201ENST00000269397 RAXQ9Y2V3 346 aa20.87■□□□□ 0.93
CBX4-201ENST00000269397 U3KQE9 123 aa20.87■□□□□ 0.93
CBX4-201ENST00000269397 COL12A1Q99715 3063 aa20.87■□□□□ 0.93
CBX4-201ENST00000269397 SPTAN1Q13813 2472 aaKnown RBP20.87■□□□□ 0.93
CBX4-201ENST00000269397 IGHV3OR16-10A0A075B7F0 116 aa20.87■□□□□ 0.93
CBX4-201ENST00000269397 LGALS1P09382 135 aaKnown RBP20.87■□□□□ 0.93
CBX4-201ENST00000269397 UBE2E1P51965 193 aa20.87■□□□□ 0.93
CBX4-201ENST00000269397 GAGE13Q4V321 117 aa20.87■□□□□ 0.93
CBX4-201ENST00000269397 MAP1AP78559 2803 aaPredicted RBP20.87■□□□□ 0.93
CBX4-201ENST00000269397 ORMDL2Q53FV1 153 aa20.86■□□□□ 0.93
CBX4-201ENST00000269397 C2orf66Q6UXQ4 117 aa20.86■□□□□ 0.93
CBX4-201ENST00000269397 UNQ9165/PRO28630Q6UXU0 137 aa20.86■□□□□ 0.93
CBX4-201ENST00000269397 TRBV12-3P01733 135 aa20.86■□□□□ 0.93
CBX4-201ENST00000269397 SCGB2A2Q13296 93 aa20.86■□□□□ 0.93
CBX4-201ENST00000269397 ZFAND2AQ8N6M9 145 aa20.86■□□□□ 0.93
CBX4-201ENST00000269397 PHLDA3Q9Y5J5 127 aa20.86■□□□□ 0.93
CBX4-201ENST00000269397 CENPVL3A0A0U1RRI6 287 aa20.85■□□□□ 0.93
CBX4-201ENST00000269397 F6UB75 175 aa20.85■□□□□ 0.93
CBX4-201ENST00000269397 CD300EQ496F6 205 aaPredicted RBP20.85■□□□□ 0.93
CBX4-201ENST00000269397 BAALCQ8WXS3 180 aa20.85■□□□□ 0.93
CBX4-201ENST00000269397 PRADC1Q9BSG0 188 aa20.85■□□□□ 0.93
CBX4-201ENST00000269397 ANXA2RQ3ZCQ2 193 aa20.84■□□□□ 0.93
CBX4-201ENST00000269397 GNRH2O43555 120 aa20.84■□□□□ 0.93
CBX4-201ENST00000269397 EMP1P54849 157 aa20.84■□□□□ 0.93
CBX4-201ENST00000269397 MORN3Q6PF18 240 aaPredicted RBP20.84■□□□□ 0.93
CBX4-201ENST00000269397 PRSS29PA6NIE9 313 aa20.83■□□□□ 0.93
CBX4-201ENST00000269397 GPHB5Q86YW7 130 aa20.83■□□□□ 0.93
CBX4-201ENST00000269397 RNASE4P34096 147 aaKnown RBP20.83■□□□□ 0.92
CBX4-201ENST00000269397 RPL11P62913 178 aaKnown RBP20.83■□□□□ 0.92
CBX4-201ENST00000269397 ITLN2Q8WWU7 325 aaPredicted RBP20.83■□□□□ 0.92
CBX4-201ENST00000269397 PLEKHB2Q96CS7 222 aa20.83■□□□□ 0.92
CBX4-201ENST00000269397 DPH3P1Q9H4G8 78 aa20.83■□□□□ 0.92
CBX4-201ENST00000269397 PGPEP1Q9NXJ5 209 aa20.83■□□□□ 0.92
CBX4-201ENST00000269397 RNF223E7ERA6 249 aa20.82■□□□□ 0.92
CBX4-201ENST00000269397 KLHL30-AS1Q8NEE0 82 aa20.82■□□□□ 0.92
CBX4-201ENST00000269397 PRO0461Q9UI25 63 aa20.82■□□□□ 0.92
CBX4-201ENST00000269397 C5orf56Q8N8D9 126 aa20.82■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms