RNA–Protein interactions for RNA: ENST00000268049.11

USP3-201, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-201ENST00000268049 IGKV1D-12P01611 117 aa6.21□□□□□ -1.41
USP3-201ENST00000268049 THAP8Q8NA92 274 aa6.21□□□□□ -1.41
USP3-201ENST00000268049 FANCD2OSQ96PS1 177 aa6.21□□□□□ -1.41
USP3-201ENST00000268049 TMEM243Q9BU79 118 aa6.21□□□□□ -1.41
USP3-201ENST00000268049 MYMXA0A1B0GTQ4 84 aa6.21□□□□□ -1.42
USP3-201ENST00000268049 LINC01548A6NM66 108 aa6.21□□□□□ -1.42
USP3-201ENST00000268049 KNCNA6PVL3 124 aa6.21□□□□□ -1.42
USP3-201ENST00000268049 LGALS9BQ3B8N2 356 aa6.21□□□□□ -1.42
USP3-201ENST00000268049 LGALS9CQ6DKI2 356 aa6.21□□□□□ -1.42
USP3-201ENST00000268049 FOXI2Q6ZQN5 318 aa6.21□□□□□ -1.42
USP3-201ENST00000268049 SPTBN4Q9H254 2564 aa6.21□□□□□ -1.42
USP3-201ENST00000268049 IGKV1D-8A0A087WSZ0 117 aa6.21□□□□□ -1.42
USP3-201ENST00000268049 LEPROTO15243 131 aa6.21□□□□□ -1.42
USP3-201ENST00000268049 NDUFS7O75251 213 aa6.21□□□□□ -1.42
USP3-201ENST00000268049 IGHV4-38-2P0DP08 117 aa6.21□□□□□ -1.42
USP3-201ENST00000268049 DUTP33316 252 aaKnown RBP6.21□□□□□ -1.42
USP3-201ENST00000268049 MRPL55Q7Z7F7 128 aaKnown RBP6.21□□□□□ -1.42
USP3-201ENST00000268049 CARD19Q96LW7 228 aa6.21□□□□□ -1.42
USP3-201ENST00000268049 PRO1854Q9UHT4 67 aa6.21□□□□□ -1.42
USP3-201ENST00000268049 C12orf74Q32Q52 190 aa6.21□□□□□ -1.42
USP3-201ENST00000268049 HIST2H2BCQ6DN03 193 aa6.21□□□□□ -1.42
USP3-201ENST00000268049 BRK1Q8WUW1 75 aa6.21□□□□□ -1.42
USP3-201ENST00000268049 RASL10AQ92737 203 aa6.21□□□□□ -1.42
USP3-201ENST00000268049 NDUFA12Q9UI09 145 aa6.21□□□□□ -1.42
USP3-201ENST00000268049 C5orf63A6NC05 138 aa6.2□□□□□ -1.42
USP3-201ENST00000268049 TCRAP04437 139 aa6.2□□□□□ -1.42
USP3-201ENST00000268049 C5orf24Q7Z6I8 188 aa6.2□□□□□ -1.42
USP3-201ENST00000268049 ZNF524Q96C55 264 aa6.2□□□□□ -1.42
USP3-201ENST00000268049 TRGV9Q99603 122 aa6.2□□□□□ -1.42
USP3-201ENST00000268049 A0A0A6YYD4 124 aa6.2□□□□□ -1.42
USP3-201ENST00000268049 ATOX1O00244 68 aa6.2□□□□□ -1.42
USP3-201ENST00000268049 C6orf226Q5I0X4 101 aa6.2□□□□□ -1.42
USP3-201ENST00000268049 GFRA4Q9GZZ7 299 aa6.2□□□□□ -1.42
USP3-201ENST00000268049 IGHV7-4-1A0A0J9YVY3 117 aa6.2□□□□□ -1.42
USP3-201ENST00000268049 IGLC1P0CG04 106 aa6.2□□□□□ -1.42
USP3-201ENST00000268049 P0DMU3 169 aa6.2□□□□□ -1.42
USP3-201ENST00000268049 FAM231AP0DMU4 169 aa6.2□□□□□ -1.42
USP3-201ENST00000268049 FAM231CP0DMU5 169 aa6.2□□□□□ -1.42
USP3-201ENST00000268049 LOXP28300 417 aaPredicted RBP6.2□□□□□ -1.42
USP3-201ENST00000268049 NMSQ5H8A3 153 aa6.2□□□□□ -1.42
USP3-201ENST00000268049 TMEM14EPQ6UXP3 125 aa6.2□□□□□ -1.42
USP3-201ENST00000268049 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP6.2□□□□□ -1.42
USP3-201ENST00000268049 HLA-DMBP28068 263 aa6.2□□□□□ -1.42
USP3-201ENST00000268049 COA6Q5JTJ3 125 aaKnown RBP6.2□□□□□ -1.42
USP3-201ENST00000268049 ZNRD1Q9P1U0 126 aa6.2□□□□□ -1.42
USP3-201ENST00000268049 U3KQK5 164 aa6.2□□□□□ -1.42
USP3-201ENST00000268049 ACYP1P07311 99 aa6.19□□□□□ -1.42
USP3-201ENST00000268049 NDPQ00604 133 aa6.19□□□□□ -1.42
USP3-201ENST00000268049 SVIPQ8NHG7 77 aa6.19□□□□□ -1.42
USP3-201ENST00000268049 TIMM21Q9BVV7 248 aa6.19□□□□□ -1.42
USP3-201ENST00000268049 PHF3Q92576 2039 aaKnown RBP6.19□□□□□ -1.42
USP3-201ENST00000268049 IGKV1D-17A0A075B6S4 117 aa6.19□□□□□ -1.42
USP3-201ENST00000268049 TRAV10A0A0B4J240 114 aa6.19□□□□□ -1.42
USP3-201ENST00000268049 FAM236AA0A1B0GUQ0 79 aa6.19□□□□□ -1.42
USP3-201ENST00000268049 FAM236BA0A1B0GV22 79 aa6.19□□□□□ -1.42
USP3-201ENST00000268049 TNFRSF13BO14836 293 aaPredicted RBP6.19□□□□□ -1.42
USP3-201ENST00000268049 Q9HAA7 133 aa6.19□□□□□ -1.42
USP3-201ENST00000268049 CENPVL3A0A0U1RRI6 287 aa6.19□□□□□ -1.42
USP3-201ENST00000268049 NPYP01303 97 aa6.19□□□□□ -1.42
USP3-201ENST00000268049 IGKV1-9A0A0C4DH69 117 aa6.19□□□□□ -1.42
USP3-201ENST00000268049 RPL32P62910 135 aaKnown RBP6.19□□□□□ -1.42
USP3-201ENST00000268049 PTPN13Q12923 2485 aa6.19□□□□□ -1.42
USP3-201ENST00000268049 HEATR5AQ86XA9 2040 aa6.19□□□□□ -1.42
USP3-201ENST00000268049 SMKR1H3BMG3 65 aa6.18□□□□□ -1.42
USP3-201ENST00000268049 HAMPP81172 84 aa6.18□□□□□ -1.42
USP3-201ENST00000268049 GPHB5Q86YW7 130 aa6.18□□□□□ -1.42
USP3-201ENST00000268049 ZNF503Q96F45 646 aa6.18□□□□□ -1.42
USP3-201ENST00000268049 PRR25Q96S07 402 aa6.18□□□□□ -1.42
USP3-201ENST00000268049 TFF1P04155 84 aa6.18□□□□□ -1.42
USP3-201ENST00000268049 CADP27708 2225 aa6.18□□□□□ -1.42
USP3-201ENST00000268049 TIRAPP58753 221 aa6.18□□□□□ -1.42
USP3-201ENST00000268049 SPG11Q96JI7 2443 aa6.18□□□□□ -1.42
USP3-201ENST00000268049 CFHR3Q02985 330 aa6.18□□□□□ -1.42
USP3-201ENST00000268049 SEM1Q6ZVN7 128 aa6.18□□□□□ -1.42
USP3-201ENST00000268049 CEP295Q9C0D2 2601 aa6.18□□□□□ -1.42
USP3-201ENST00000268049 Q6YL49 198 aa6.18□□□□□ -1.42
USP3-201ENST00000268049 LIME1Q9H400 295 aa6.18□□□□□ -1.42
USP3-201ENST00000268049 C19orf84I3L1E1 186 aa6.17□□□□□ -1.42
USP3-201ENST00000268049 WISP2O76076 250 aa6.17□□□□□ -1.42
USP3-201ENST00000268049 NDUFA7O95182 113 aa6.17□□□□□ -1.42
USP3-201ENST00000268049 VCYO14598 125 aa6.17□□□□□ -1.42
USP3-201ENST00000268049 TAX1BP3O14907 124 aa6.17□□□□□ -1.42
USP3-201ENST00000268049 FHL1Q13642 323 aa6.17□□□□□ -1.42
USP3-201ENST00000268049 TEN1Q86WV5 123 aa6.17□□□□□ -1.42
USP3-201ENST00000268049 ZNF106Q9H2Y7 1883 aaKnown RBP6.17□□□□□ -1.42
USP3-201ENST00000268049 RS1O15537 224 aa6.17□□□□□ -1.42
USP3-201ENST00000268049 WFDC2Q14508 124 aa6.17□□□□□ -1.42
USP3-201ENST00000268049 LYPD1Q8N2G4 141 aa6.17□□□□□ -1.42
USP3-201ENST00000268049 LINC00482Q8N8I6 264 aa6.17□□□□□ -1.42
USP3-201ENST00000268049 C8orf31Q8N9H6 132 aa6.17□□□□□ -1.42
USP3-201ENST00000268049 IGHV1OR15-1A0A075B7D0 117 aa6.17□□□□□ -1.42
USP3-201ENST00000268049 A0A1B0GX51 115 aa6.17□□□□□ -1.42
USP3-201ENST00000268049 FOXI1Q12951 378 aa6.17□□□□□ -1.42
USP3-201ENST00000268049 KIR2DL5BQ8NHK3 375 aa6.17□□□□□ -1.42
USP3-201ENST00000268049 ZC2HC1AQ96GY0 325 aa6.17□□□□□ -1.42
USP3-201ENST00000268049 SH2D1AO60880 128 aa6.16□□□□□ -1.42
USP3-201ENST00000268049 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP6.16□□□□□ -1.421e-6■■■■□ 20.5
USP3-201ENST00000268049 ZNF503-AS2A6NEH8 195 aa6.16□□□□□ -1.42
USP3-201ENST00000268049 G3V318 75 aa6.16□□□□□ -1.42
USP3-201ENST00000268049 ARMS2P0C7Q2 107 aa6.16□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms