RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 PKD1L1Q8TDX9 2849 aa12.29□□□□□ -0.44
USP4-201ENST00000265560 GNRH2O43555 120 aa12.28□□□□□ -0.44
USP4-201ENST00000265560 NTF3P20783 257 aa12.28□□□□□ -0.44
USP4-201ENST00000265560 SPATA3Q8NHX4 192 aa12.28□□□□□ -0.44
USP4-201ENST00000265560 RCHY1Q96PM5 261 aa12.28□□□□□ -0.44
USP4-201ENST00000265560 SAP30O75446 220 aa12.28□□□□□ -0.44
USP4-201ENST00000265560 NDUFA7O95182 113 aa12.28□□□□□ -0.44
USP4-201ENST00000265560 S100A2P29034 98 aa12.28□□□□□ -0.44
USP4-201ENST00000265560 BAGE3Q86Y29 109 aa12.28□□□□□ -0.44
USP4-201ENST00000265560 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP12.28□□□□□ -0.44
USP4-201ENST00000265560 A0A0J9YX75 114 aa12.28□□□□□ -0.44
USP4-201ENST00000265560 FOSL1P15407 271 aa12.28□□□□□ -0.44
USP4-201ENST00000265560 OR10D4PQ8NGN7 298 aa12.28□□□□□ -0.44
USP4-201ENST00000265560 H3BVH4 76 aa12.27□□□□□ -0.44
USP4-201ENST00000265560 PRM2P04554 102 aa12.27□□□□□ -0.44
USP4-201ENST00000265560 HTN1P15515 57 aa12.27□□□□□ -0.44
USP4-201ENST00000265560 EBLN2Q6P2I7 272 aa12.27□□□□□ -0.44
USP4-201ENST00000265560 ANXA2RQ3ZCQ2 193 aa12.27□□□□□ -0.45
USP4-201ENST00000265560 OR10AG1Q8NH19 301 aa12.27□□□□□ -0.45
USP4-201ENST00000265560 MUC4Q99102 2169 aa12.26□□□□□ -0.45
USP4-201ENST00000265560 FAM231BA6NCW3 169 aa12.26□□□□□ -0.45
USP4-201ENST00000265560 SERF1AO75920 110 aa12.26□□□□□ -0.45
USP4-201ENST00000265560 MT-ND6P03923 174 aa12.26□□□□□ -0.45
USP4-201ENST00000265560 LINC00310P59036 64 aa12.26□□□□□ -0.45
USP4-201ENST00000265560 ATP5L2Q7Z4Y8 100 aa12.26□□□□□ -0.45
USP4-201ENST00000265560 LINC01559Q495D7 138 aa12.26□□□□□ -0.45
USP4-201ENST00000265560 HIST1H2BLQ99880 126 aa12.26□□□□□ -0.45
USP4-201ENST00000265560 AMN1Q8IY45 258 aa12.25□□□□□ -0.45
USP4-201ENST00000265560 IGLC6P0CF74 106 aa12.25□□□□□ -0.45
USP4-201ENST00000265560 RIGQ13278 110 aa12.25□□□□□ -0.45
USP4-201ENST00000265560 BORCS7Q96B45 105 aa12.25□□□□□ -0.45
USP4-201ENST00000265560 FAM19A4Q96LR4 140 aa12.24□□□□□ -0.45
USP4-201ENST00000265560 SMKR1H3BMG3 65 aa12.24□□□□□ -0.45
USP4-201ENST00000265560 WFDC10AQ9H1F0 79 aa12.24□□□□□ -0.45
USP4-201ENST00000265560 AMBPP02760 352 aa12.24□□□□□ -0.45
USP4-201ENST00000265560 TRAV21A0A0B4J279 112 aa12.23□□□□□ -0.45
USP4-201ENST00000265560 MAP6D1Q9H9H5 199 aa12.23□□□□□ -0.45
USP4-201ENST00000265560 ZNF256Q9Y2P7 627 aaPredicted RBP12.23□□□□□ -0.45
USP4-201ENST00000265560 GAS8-AS1O95177 125 aa12.23□□□□□ -0.45
USP4-201ENST00000265560 CDPF1Q6NVV7 123 aa12.23□□□□□ -0.45
USP4-201ENST00000265560 FAM19A2Q8N3H0 131 aa12.23□□□□□ -0.45
USP4-201ENST00000265560 C18orf32Q8TCD1 76 aa12.23□□□□□ -0.45
USP4-201ENST00000265560 ALKBH7Q9BT30 221 aaPredicted RBP12.23□□□□□ -0.45
USP4-201ENST00000265560 M0R381 172 aa12.22□□□□□ -0.45
USP4-201ENST00000265560 S100A4P26447 101 aaKnown RBP12.22□□□□□ -0.45
USP4-201ENST00000265560 RASL11AQ6T310 242 aa12.22□□□□□ -0.45
USP4-201ENST00000265560 PF4P02776 101 aa12.22□□□□□ -0.45
USP4-201ENST00000265560 EVI2AP22794 236 aa12.22□□□□□ -0.45
USP4-201ENST00000265560 LENEPQ9Y5L5 61 aa12.22□□□□□ -0.45
USP4-201ENST00000265560 LOC102724200A0A096LPH7 203 aaPredicted RBP12.22□□□□□ -0.45
USP4-201ENST00000265560 RBMY1BA6NDE4 496 aaKnown RBP12.22□□□□□ -0.45
USP4-201ENST00000265560 RBMY1EA6NEQ0 496 aaKnown RBP12.22□□□□□ -0.45
USP4-201ENST00000265560 NCR2O95944 276 aa12.22□□□□□ -0.45
USP4-201ENST00000265560 RBMY1DP0C7P1 496 aaKnown RBP12.22□□□□□ -0.45
USP4-201ENST00000265560 PACRGQ96M98 296 aaPredicted RBP12.22□□□□□ -0.45
USP4-201ENST00000265560 RPS20P60866 119 aaKnown RBP12.21□□□□□ -0.45
USP4-201ENST00000265560 COX19Q49B96 90 aa12.21□□□□□ -0.45
USP4-201ENST00000265560 NACAE9PAV3 2078 aa12.21□□□□□ -0.45
USP4-201ENST00000265560 KLLNB2CW77 178 aa12.21□□□□□ -0.46
USP4-201ENST00000265560 CD7P09564 240 aa12.21□□□□□ -0.46
USP4-201ENST00000265560 CTRLP40313 264 aa12.21□□□□□ -0.46
USP4-201ENST00000265560 ODF3L2Q3SX64 289 aa12.21□□□□□ -0.46
USP4-201ENST00000265560 C12orf57Q99622 126 aa12.21□□□□□ -0.46
USP4-201ENST00000265560 PMCHL1Q16048 86 aa12.2□□□□□ -0.46
USP4-201ENST00000265560 COA6Q5JTJ3 125 aaKnown RBP12.2□□□□□ -0.46
USP4-201ENST00000265560 SAMD13Q5VXD3 122 aa12.2□□□□□ -0.46
USP4-201ENST00000265560 FOXI2Q6ZQN5 318 aa12.2□□□□□ -0.46
USP4-201ENST00000265560 PMCHP20382 165 aa12.2□□□□□ -0.46
USP4-201ENST00000265560 SPANXN1Q5VSR9 72 aa12.2□□□□□ -0.46
USP4-201ENST00000265560 Q6AWC8 147 aa12.2□□□□□ -0.46
USP4-201ENST00000265560 H3BMM0 161 aa12.2□□□□□ -0.46
USP4-201ENST00000265560 RBMY1A1P0DJD3 496 aaKnown RBP12.2□□□□□ -0.46
USP4-201ENST00000265560 RBMY1CP0DJD4 496 aa12.2□□□□□ -0.46
USP4-201ENST00000265560 CDKN1BP46527 198 aa12.2□□□□□ -0.46
USP4-201ENST00000265560 RBMY1FQ15415 496 aaKnown RBP12.2□□□□□ -0.46
USP4-201ENST00000265560 AMTNQ6UX39 209 aa12.2□□□□□ -0.46
USP4-201ENST00000265560 LINC00518Q8N0U6 118 aa12.2□□□□□ -0.46
USP4-201ENST00000265560 LOC389332A0A1B0GUA5 103 aa12.19□□□□□ -0.46
USP4-201ENST00000265560 FAM159AQ6UWV7 190 aa12.19□□□□□ -0.46
USP4-201ENST00000265560 C7orf71A4D174 169 aa12.19□□□□□ -0.46
USP4-201ENST00000265560 OR4C46A6NHA9 309 aa12.19□□□□□ -0.46
USP4-201ENST00000265560 PCP4L1A6NKN8 68 aa12.19□□□□□ -0.46
USP4-201ENST00000265560 GATA1P15976 413 aaPredicted RBP12.19□□□□□ -0.46
USP4-201ENST00000265560 RNASEKQ6P5S7 137 aaKnown RBP12.19□□□□□ -0.46
USP4-201ENST00000265560 TRAV26-2A0A0B4J265 109 aa12.18□□□□□ -0.46
USP4-201ENST00000265560 D6R8Y8 96 aa12.18□□□□□ -0.46
USP4-201ENST00000265560 ZNF324O75467 553 aaPredicted RBP12.18□□□□□ -0.46
USP4-201ENST00000265560 PYY3Q5JQD4 70 aa12.18□□□□□ -0.46
USP4-201ENST00000265560 SPAG8Q99932 426 aaPredicted RBP12.18□□□□□ -0.46
USP4-201ENST00000265560 SAMD10Q9BYL1 202 aa12.18□□□□□ -0.46
USP4-201ENST00000265560 MDFICQ9P1T7 246 aa12.18□□□□□ -0.46
USP4-201ENST00000265560 MRPL51Q4U2R6 128 aaKnown RBP12.17□□□□□ -0.46
USP4-201ENST00000265560 NOTCH1P46531 2555 aa12.17□□□□□ -0.46
USP4-201ENST00000265560 Q0VG73 95 aa12.17□□□□□ -0.46
USP4-201ENST00000265560 RNASE3P12724 160 aaKnown RBP12.17□□□□□ -0.46
USP4-201ENST00000265560 HLA-DRB4P13762 266 aa12.17□□□□□ -0.46
USP4-201ENST00000265560 DMRTA1Q5VZB9 504 aa12.17□□□□□ -0.46
USP4-201ENST00000265560 FAM104BQ5XKR9 115 aa12.17□□□□□ -0.46
USP4-201ENST00000265560 NDUFA11Q86Y39 141 aa12.17□□□□□ -0.46
USP4-201ENST00000265560 JPT2Q9H910 190 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms