RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 SMAGPQ0VAQ4 97 aa9.46□□□□□ -0.9
NUP88-201ENST00000225696 CCDC144NLQ6NUI1 221 aa9.46□□□□□ -0.9
NUP88-201ENST00000225696 FAM110DQ8TAY7 271 aaPredicted RBP9.46□□□□□ -0.9
NUP88-201ENST00000225696 RPL39LQ96EH5 51 aaKnown RBP9.46□□□□□ -0.9
NUP88-201ENST00000225696 TIMD4Q96H15 378 aa9.46□□□□□ -0.9
NUP88-201ENST00000225696 C20orf173Q96LM9 149 aa9.46□□□□□ -0.9
NUP88-201ENST00000225696 TRBV7-3A0A075B6L6 115 aa9.45□□□□□ -0.9
NUP88-201ENST00000225696 PRSS47A8MTI9 375 aa9.45□□□□□ -0.9
NUP88-201ENST00000225696 SRSF1Q07955 248 aaKnown RBP eCLIP9.45□□□□□ -0.9
NUP88-201ENST00000225696 LINC00527Q9UJ94 153 aa9.45□□□□□ -0.9
NUP88-201ENST00000225696 CRYBG3Q68DQ2 2970 aa9.45□□□□□ -0.9
NUP88-201ENST00000225696 SAMD13Q5VXD3 122 aa9.44□□□□□ -0.9
NUP88-201ENST00000225696 SPAG8Q99932 426 aaPredicted RBP9.44□□□□□ -0.9
NUP88-201ENST00000225696 SLC50A1Q9BRV3 221 aa9.44□□□□□ -0.9
NUP88-201ENST00000225696 M0R381 172 aa9.44□□□□□ -0.9
NUP88-201ENST00000225696 CCL21O00585 134 aa9.44□□□□□ -0.9
NUP88-201ENST00000225696 HLA-DRB4P13762 266 aa9.44□□□□□ -0.9
NUP88-201ENST00000225696 RASL10AQ92737 203 aa9.44□□□□□ -0.9
NUP88-201ENST00000225696 SMIM2Q9BVW6 85 aa9.44□□□□□ -0.9
NUP88-201ENST00000225696 CYSLTR1Q9Y271 337 aa9.44□□□□□ -0.9
NUP88-201ENST00000225696 HLA-DRB4X5D2U9 266 aa9.44□□□□□ -0.9
NUP88-201ENST00000225696 RNF223E7ERA6 249 aa9.43□□□□□ -0.9
NUP88-201ENST00000225696 K7ENP7 123 aa9.43□□□□□ -0.9
NUP88-201ENST00000225696 SCGB2A1O75556 95 aa9.43□□□□□ -0.9
NUP88-201ENST00000225696 PSMG4Q5JS54 123 aa9.43□□□□□ -0.9
NUP88-201ENST00000225696 C11orf71Q6IPW1 123 aa9.43□□□□□ -0.9
NUP88-201ENST00000225696 C9orf47Q6ZRZ4 202 aa9.43□□□□□ -0.9
NUP88-201ENST00000225696 PRO0461Q9UI25 63 aa9.43□□□□□ -0.9
NUP88-201ENST00000225696 IGHV4-4A0A075B6R2 117 aa9.43□□□□□ -0.9
NUP88-201ENST00000225696 A0A1W2PPR1 153 aa9.43□□□□□ -0.9
NUP88-201ENST00000225696 F8VRH5 84 aa9.43□□□□□ -0.9
NUP88-201ENST00000225696 PLNP26678 52 aa9.43□□□□□ -0.9
NUP88-201ENST00000225696 MORN3Q6PF18 240 aaPredicted RBP9.43□□□□□ -0.9
NUP88-201ENST00000225696 SFTA2Q6UW10 78 aa9.43□□□□□ -0.9
NUP88-201ENST00000225696 C14orf178Q8N769 122 aaPredicted RBP9.43□□□□□ -0.9
NUP88-201ENST00000225696 SIRPDQ9H106 197 aa9.43□□□□□ -0.9
NUP88-201ENST00000225696 CELSR2Q9HCU4 2923 aa9.42□□□□□ -0.9
NUP88-201ENST00000225696 GAGE12HA6NDE8 117 aa9.42□□□□□ -0.9
NUP88-201ENST00000225696 PRSS29PA6NIE9 313 aa9.42□□□□□ -0.9
NUP88-201ENST00000225696 F8W1H4 67 aa9.42□□□□□ -0.9
NUP88-201ENST00000225696 H7C1H1 209 aa9.42□□□□□ -0.9
NUP88-201ENST00000225696 RRN3P1Q2M238 152 aa9.42□□□□□ -0.9
NUP88-201ENST00000225696 SCGB3A1Q96QR1 104 aa9.42□□□□□ -0.9
NUP88-201ENST00000225696 CHTOPQ9Y3Y2 248 aaKnown RBP9.42□□□□□ -0.9
NUP88-201ENST00000225696 MYMXA0A1B0GTQ4 84 aa9.41□□□□□ -0.9
NUP88-201ENST00000225696 LGALS1P09382 135 aaKnown RBP9.41□□□□□ -0.9
NUP88-201ENST00000225696 SAA4P35542 130 aa9.41□□□□□ -0.9
NUP88-201ENST00000225696 MINOS1Q5TGZ0 78 aa9.41□□□□□ -0.9
NUP88-201ENST00000225696 GPHB5Q86YW7 130 aa9.41□□□□□ -0.9
NUP88-201ENST00000225696 NEXN-AS1Q8NBZ9 246 aa9.41□□□□□ -0.9
NUP88-201ENST00000225696 METTL26Q96S19 204 aa9.41□□□□□ -0.9
NUP88-201ENST00000225696 MINOS1-NBL1R4GNA1 71 aa9.41□□□□□ -0.9
NUP88-201ENST00000225696 TRBV12-3P01733 135 aa9.41□□□□□ -0.9
NUP88-201ENST00000225696 SUMO2P61956 95 aaKnown RBP9.41□□□□□ -0.9
NUP88-201ENST00000225696 ATP5G2Q06055 141 aa9.41□□□□□ -0.9
NUP88-201ENST00000225696 CD300EQ496F6 205 aaPredicted RBP9.41□□□□□ -0.9
NUP88-201ENST00000225696 C1orf122Q6ZSJ8 110 aa9.41□□□□□ -0.9
NUP88-201ENST00000225696 TMEM219Q86XT9 240 aa9.41□□□□□ -0.9
NUP88-201ENST00000225696 PLEKHB2Q96CS7 222 aa9.41□□□□□ -0.9
NUP88-201ENST00000225696 C16orf92Q96LL3 132 aa9.41□□□□□ -0.9
NUP88-201ENST00000225696 SIGMAR1Q99720 223 aa9.41□□□□□ -0.9
NUP88-201ENST00000225696 U3KQE9 123 aa9.41□□□□□ -0.9
NUP88-201ENST00000225696 OOSP1A8MZH6 123 aa9.4□□□□□ -0.9
NUP88-201ENST00000225696 F6UB75 175 aa9.4□□□□□ -0.9
NUP88-201ENST00000225696 RAB9AP51151 201 aa9.4□□□□□ -0.9
NUP88-201ENST00000225696 TAL2Q16559 108 aa9.4□□□□□ -0.9
NUP88-201ENST00000225696 UNQ9165/PRO28630Q6UXU0 137 aa9.4□□□□□ -0.9
NUP88-201ENST00000225696 ZFAND2AQ8N6M9 145 aa9.4□□□□□ -0.9
NUP88-201ENST00000225696 KLHL30-AS1Q8NEE0 82 aa9.4□□□□□ -0.9
NUP88-201ENST00000225696 TOMM6Q96B49 74 aa9.4□□□□□ -0.9
NUP88-201ENST00000225696 MUC4Q99102 2169 aa9.4□□□□□ -0.9
NUP88-201ENST00000225696 TRAV12-1A0A0B4J245 112 aa9.4□□□□□ -0.91
NUP88-201ENST00000225696 A0A1B0GWB2 263 aa9.4□□□□□ -0.91
NUP88-201ENST00000225696 OR11H12B2RN74 326 aa9.4□□□□□ -0.91
NUP88-201ENST00000225696 EMP1P54849 157 aa9.4□□□□□ -0.91
NUP88-201ENST00000225696 ADORA2A-AS1P86434 159 aa9.4□□□□□ -0.91
NUP88-201ENST00000225696 GAGE13Q4V321 117 aa9.4□□□□□ -0.91
NUP88-201ENST00000225696 OR11H1Q8NG94 326 aa9.4□□□□□ -0.91
NUP88-201ENST00000225696 OR11H2Q8NH07 326 aa9.4□□□□□ -0.91
NUP88-201ENST00000225696 GLMPQ8WWB7 406 aa9.4□□□□□ -0.91
NUP88-201ENST00000225696 BAALCQ8WXS3 180 aa9.4□□□□□ -0.91
NUP88-201ENST00000225696 GNRH2O43555 120 aa9.39□□□□□ -0.91
NUP88-201ENST00000225696 FBXL19-AS1Q494R0 122 aa9.39□□□□□ -0.91
NUP88-201ENST00000225696 ITLN2Q8WWU7 325 aaPredicted RBP9.39□□□□□ -0.91
NUP88-201ENST00000225696 MRAP2Q96G30 205 aa9.39□□□□□ -0.91
NUP88-201ENST00000225696 PRADC1Q9BSG0 188 aa9.39□□□□□ -0.91
NUP88-201ENST00000225696 KLK9Q2XQG4 91 aa9.39□□□□□ -0.91
NUP88-201ENST00000225696 C2orf66Q6UXQ4 117 aa9.39□□□□□ -0.91
NUP88-201ENST00000225696 EEF1AKMT3Q96AZ1 226 aa9.39□□□□□ -0.91
NUP88-201ENST00000225696 PGPEP1Q9NXJ5 209 aa9.39□□□□□ -0.91
NUP88-201ENST00000225696 KLK9Q9UKQ9 250 aa9.39□□□□□ -0.91
NUP88-201ENST00000225696 IGHV3OR16-10A0A075B7F0 116 aa9.38□□□□□ -0.91
NUP88-201ENST00000225696 CENPVL3A0A0U1RRI6 287 aa9.38□□□□□ -0.91
NUP88-201ENST00000225696 MGPP08493 103 aa9.38□□□□□ -0.91
NUP88-201ENST00000225696 SMCPP49901 116 aaPredicted RBP9.38□□□□□ -0.91
NUP88-201ENST00000225696 ANXA2RQ3ZCQ2 193 aa9.38□□□□□ -0.91
NUP88-201ENST00000225696 HIF1ANQ9NWT6 349 aa9.38□□□□□ -0.91
NUP88-201ENST00000225696 RAXQ9Y2V3 346 aa9.38□□□□□ -0.91
NUP88-201ENST00000225696 HIVEP3Q5T1R4 2406 aa9.38□□□□□ -0.91
NUP88-201ENST00000225696 IGKV3-7A0A075B6H7 116 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms