RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 IGHV5-51A0A0C4DH38 117 aa4.52□□□□□ -1.69
SCN1A-216ENST00000637968 WI2-2373I1.2A0A1W2PRP0 233 aa4.52□□□□□ -1.69
SCN1A-216ENST00000637968 LINC01548A6NM66 108 aa4.52□□□□□ -1.69
SCN1A-216ENST00000637968 RPL11P62913 178 aaKnown RBP4.52□□□□□ -1.69
SCN1A-216ENST00000637968 CEMP1Q6PRD7 247 aaPredicted RBP4.52□□□□□ -1.69
SCN1A-216ENST00000637968 Q6ZPA2 131 aa4.52□□□□□ -1.69
SCN1A-216ENST00000637968 FXYD5Q96DB9 178 aa4.52□□□□□ -1.69
SCN1A-216ENST00000637968 SVILO95425 2214 aa4.52□□□□□ -1.69
SCN1A-216ENST00000637968 TRAV12-1A0A0B4J245 112 aa4.52□□□□□ -1.69
SCN1A-216ENST00000637968 TMEM89A2RUT3 159 aa4.52□□□□□ -1.69
SCN1A-216ENST00000637968 NBR2O15453 112 aa4.52□□□□□ -1.69
SCN1A-216ENST00000637968 Q6ZSR3 168 aa4.52□□□□□ -1.69
SCN1A-216ENST00000637968 AGRNO00468 2067 aa4.51□□□□□ -1.69
SCN1A-216ENST00000637968 CACNA1HO95180 2353 aa4.51□□□□□ -1.69
SCN1A-216ENST00000637968 A0A096LNJ9 63 aa4.51□□□□□ -1.69
SCN1A-216ENST00000637968 LINC00473A8K010 186 aa4.51□□□□□ -1.69
SCN1A-216ENST00000637968 TMEM105Q8N8V8 129 aa4.51□□□□□ -1.69
SCN1A-216ENST00000637968 ZNF524Q96C55 264 aa4.51□□□□□ -1.69
SCN1A-216ENST00000637968 FOXS1O43638 330 aa4.51□□□□□ -1.69
SCN1A-216ENST00000637968 PRCDQ00LT1 54 aa4.51□□□□□ -1.69
SCN1A-216ENST00000637968 RHOHQ15669 191 aa4.51□□□□□ -1.69
SCN1A-216ENST00000637968 Q6ZT83 130 aa4.51□□□□□ -1.69
SCN1A-216ENST00000637968 SAP25Q8TEE9 199 aa4.51□□□□□ -1.69
SCN1A-216ENST00000637968 FAM19A4Q96LR4 140 aa4.51□□□□□ -1.69
SCN1A-216ENST00000637968 CACNA1EQ15878 2313 aa4.51□□□□□ -1.69
SCN1A-216ENST00000637968 TET1Q8NFU7 2136 aa4.51□□□□□ -1.69
SCN1A-216ENST00000637968 ACACAQ13085 2346 aa4.51□□□□□ -1.69
SCN1A-216ENST00000637968 TRAV3A0A0B4J244 114 aa4.51□□□□□ -1.69
SCN1A-216ENST00000637968 IGHV3-13P01766 116 aa4.51□□□□□ -1.69
SCN1A-216ENST00000637968 CCL4P13236 92 aa4.51□□□□□ -1.69
SCN1A-216ENST00000637968 MAGEA5P43359 124 aa4.51□□□□□ -1.69
SCN1A-216ENST00000637968 CRIP2P52943 208 aaPredicted RBP4.51□□□□□ -1.69
SCN1A-216ENST00000637968 TMEM200BQ69YZ2 307 aa4.51□□□□□ -1.69
SCN1A-216ENST00000637968 DPH3P1Q9H4G8 78 aa4.51□□□□□ -1.69
SCN1A-216ENST00000637968 MYOFQ9NZM1 2061 aa4.51□□□□□ -1.69
SCN1A-216ENST00000637968 IGHV5-10-1A0A0J9YXX1 117 aa4.5□□□□□ -1.69
SCN1A-216ENST00000637968 IGHV3-33P01772 117 aa4.5□□□□□ -1.69
SCN1A-216ENST00000637968 P0C879 139 aa4.5□□□□□ -1.69
SCN1A-216ENST00000637968 FOXF2Q12947 444 aa4.5□□□□□ -1.69
SCN1A-216ENST00000637968 NSUN5P1Q3KNT7 163 aa4.5□□□□□ -1.69
SCN1A-216ENST00000637968 LINC00322Q6ZN03 302 aaPredicted RBP4.5□□□□□ -1.69
SCN1A-216ENST00000637968 FAM167A-AS1Q96KT0 104 aa4.5□□□□□ -1.69
SCN1A-216ENST00000637968 ICOSQ9Y6W8 199 aa4.5□□□□□ -1.69
SCN1A-216ENST00000637968 ZNF22P17026 224 aaPredicted RBP4.5□□□□□ -1.69
SCN1A-216ENST00000637968 EEF1AKMT3Q96AZ1 226 aa4.5□□□□□ -1.69
SCN1A-216ENST00000637968 U3KQK5 164 aa4.5□□□□□ -1.69
SCN1A-216ENST00000637968 IGKV3D-7A0A0C4DH55 119 aa4.5□□□□□ -1.69
SCN1A-216ENST00000637968 IQCF6A8MYZ5 107 aa4.5□□□□□ -1.69
SCN1A-216ENST00000637968 IGLV2-14P01704 120 aa4.5□□□□□ -1.69
SCN1A-216ENST00000637968 NBL1P41271 181 aa4.5□□□□□ -1.69
SCN1A-216ENST00000637968 LTBP1Q14766 1721 aa4.5□□□□□ -1.69
SCN1A-216ENST00000637968 KLHL30-AS1Q8NEE0 82 aa4.5□□□□□ -1.69
SCN1A-216ENST00000637968 DKK4Q9UBT3 224 aa4.5□□□□□ -1.69
SCN1A-216ENST00000637968 COL4A4P53420 1690 aaPredicted RBP4.5□□□□□ -1.69
SCN1A-216ENST00000637968 SRRM4A7MD48 611 aaKnown RBP4.5□□□□□ -1.69
SCN1A-216ENST00000637968 SH2D1AO60880 128 aa4.5□□□□□ -1.69
SCN1A-216ENST00000637968 S100A4P26447 101 aaKnown RBP4.5□□□□□ -1.69
SCN1A-216ENST00000637968 EBI3Q14213 229 aa4.5□□□□□ -1.69
SCN1A-216ENST00000637968 PIP4P2Q8N4L2 257 aa4.5□□□□□ -1.69
SCN1A-216ENST00000637968 IL17DQ8TAD2 202 aa4.5□□□□□ -1.69
SCN1A-216ENST00000637968 HS3ST6Q96QI5 342 aa4.5□□□□□ -1.69
SCN1A-216ENST00000637968 EML5Q05BV3 1969 aa4.5□□□□□ -1.69
SCN1A-216ENST00000637968 CCL21O00585 134 aa4.49□□□□□ -1.69
SCN1A-216ENST00000637968 IGHV3-48P01763 117 aa4.49□□□□□ -1.69
SCN1A-216ENST00000637968 MRPS36P82909 103 aaKnown RBP4.49□□□□□ -1.69
SCN1A-216ENST00000637968 RPL39P5Q59GN2 51 aa4.49□□□□□ -1.69
SCN1A-216ENST00000637968 C20orf197Q8N268 126 aa4.49□□□□□ -1.69
SCN1A-216ENST00000637968 TMEM75Q8N9X5 138 aa4.49□□□□□ -1.69
SCN1A-216ENST00000637968 TP53TG1Q9Y2A0 90 aa4.49□□□□□ -1.69
SCN1A-216ENST00000637968 TRBV30A0A0K0K1B3 111 aa4.49□□□□□ -1.69
SCN1A-216ENST00000637968 MGPP08493 103 aa4.49□□□□□ -1.69
SCN1A-216ENST00000637968 C16orf47Q6ZP98 133 aaPredicted RBP4.49□□□□□ -1.69
SCN1A-216ENST00000637968 CRIPAKQ8N1N5 446 aa4.49□□□□□ -1.69
SCN1A-216ENST00000637968 PPP1R17O96001 155 aa4.49□□□□□ -1.69
SCN1A-216ENST00000637968 GHRHP01286 108 aa4.49□□□□□ -1.69
SCN1A-216ENST00000637968 IGKV3-11P04433 115 aa4.49□□□□□ -1.69
SCN1A-216ENST00000637968 CIRBPQ14011 172 aaKnown RBP4.49□□□□□ -1.69
SCN1A-216ENST00000637968 C11orf53Q8IXP5 236 aa4.49□□□□□ -1.69
SCN1A-216ENST00000637968 TTC28Q96AY4 2481 aa4.49□□□□□ -1.69
SCN1A-216ENST00000637968 TRBV19A0A075B6N1 114 aa4.49□□□□□ -1.69
SCN1A-216ENST00000637968 USP17L23D6RBM5 183 aa4.49□□□□□ -1.69
SCN1A-216ENST00000637968 TIMM17BO60830 172 aa4.49□□□□□ -1.69
SCN1A-216ENST00000637968 FAM201AQ5SY85 155 aa4.49□□□□□ -1.69
SCN1A-216ENST00000637968 SLC25A45Q8N413 288 aa4.49□□□□□ -1.69
SCN1A-216ENST00000637968 SLC25A29Q8N8R3 303 aa4.49□□□□□ -1.69
SCN1A-216ENST00000637968 A0A0J9YY99 117 aa4.48□□□□□ -1.69
SCN1A-216ENST00000637968 LINC00205P59089 165 aa4.48□□□□□ -1.69
SCN1A-216ENST00000637968 LINC00311Q8N616 119 aa4.48□□□□□ -1.69
SCN1A-216ENST00000637968 C7orf69Q9H7B7 122 aa4.48□□□□□ -1.69
SCN1A-216ENST00000637968 TRBV7-1A0A0A6YYK4 115 aa4.48□□□□□ -1.69
SCN1A-216ENST00000637968 IGLV3-19P01714 112 aa4.48□□□□□ -1.69
SCN1A-216ENST00000637968 DAD1P61803 113 aa4.48□□□□□ -1.69
SCN1A-216ENST00000637968 Q5XG85 94 aa4.48□□□□□ -1.69
SCN1A-216ENST00000637968 SDIM1Q6ZPB5 146 aa4.48□□□□□ -1.69
SCN1A-216ENST00000637968 CXorf67Q86X51 503 aaPredicted RBP4.48□□□□□ -1.69
SCN1A-216ENST00000637968 MUSTN1Q8IVN3 82 aa4.48□□□□□ -1.69
SCN1A-216ENST00000637968 POM121L12Q8N7R1 296 aa4.48□□□□□ -1.69
SCN1A-216ENST00000637968 INTS1Q8N201 2190 aaKnown RBP4.48□□□□□ -1.69
SCN1A-216ENST00000637968 H7C423 109 aa4.48□□□□□ -1.69
SCN1A-216ENST00000637968 MLANAQ16655 118 aa4.48□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms