RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-223ENST00000637823 FAM110AQ9BQ89 295 aa8.75□□□□□ -1.01
CLN6-223ENST00000637823 A8MTW9 85 aa8.74□□□□□ -1.01
CLN6-223ENST00000637823 OR11H12B2RN74 326 aa8.74□□□□□ -1.01
CLN6-223ENST00000637823 HLA-DRB4P13762 266 aa8.74□□□□□ -1.01
CLN6-223ENST00000637823 S100PP25815 95 aa8.74□□□□□ -1.01
CLN6-223ENST00000637823 LEPP41159 167 aa8.74□□□□□ -1.01
CLN6-223ENST00000637823 ZNF80P51504 273 aaPredicted RBP8.74□□□□□ -1.01
CLN6-223ENST00000637823 IL36BQ9NZH7 164 aa8.74□□□□□ -1.01
CLN6-223ENST00000637823 HLA-DRB4X5D2U9 266 aa8.74□□□□□ -1.01
CLN6-223ENST00000637823 STAB1Q9NY15 2570 aa8.74□□□□□ -1.01
CLN6-223ENST00000637823 KNCNA6PVL3 124 aa8.73□□□□□ -1.01
CLN6-223ENST00000637823 H3BMM0 161 aa8.73□□□□□ -1.01
CLN6-223ENST00000637823 SH2D1AO60880 128 aa8.73□□□□□ -1.01
CLN6-223ENST00000637823 GPX1P07203 203 aa8.73□□□□□ -1.01
CLN6-223ENST00000637823 PFN1P07737 140 aaKnown RBP8.73□□□□□ -1.01
CLN6-223ENST00000637823 TSPOP30536 169 aa8.73□□□□□ -1.01
CLN6-223ENST00000637823 ODF3L2Q3SX64 289 aa8.73□□□□□ -1.01
CLN6-223ENST00000637823 CT83Q5H943 113 aa8.73□□□□□ -1.01
CLN6-223ENST00000637823 ACTL10Q5JWF8 245 aa8.73□□□□□ -1.01
CLN6-223ENST00000637823 KCNIP4Q6PIL6 250 aa8.73□□□□□ -1.01
CLN6-223ENST00000637823 APRG1Q8IVJ8 170 aa8.73□□□□□ -1.01
CLN6-223ENST00000637823 ZFAND2AQ8N6M9 145 aa8.73□□□□□ -1.01
CLN6-223ENST00000637823 SPATA3Q8NHX4 192 aa8.73□□□□□ -1.01
CLN6-223ENST00000637823 CLUHP3Q96NS8 147 aa8.73□□□□□ -1.01
CLN6-223ENST00000637823 RPP21Q9H633 154 aaKnown RBP8.73□□□□□ -1.01
CLN6-223ENST00000637823 COL6A5A8TX70 2615 aa8.73□□□□□ -1.01
CLN6-223ENST00000637823 A8MWL6 223 aa8.72□□□□□ -1.01
CLN6-223ENST00000637823 WIPF1O43516 503 aa8.72□□□□□ -1.01
CLN6-223ENST00000637823 ELOBQ15370 118 aa8.72□□□□□ -1.01
CLN6-223ENST00000637823 YPEL4Q96NS1 127 aa8.72□□□□□ -1.01
CLN6-223ENST00000637823 TRAV9-1A0A075B6T8 112 aa8.71□□□□□ -1.02
CLN6-223ENST00000637823 SMIM27A0A1W2PRY6 76 aa8.71□□□□□ -1.02
CLN6-223ENST00000637823 TMEM189A5PLL7 270 aa8.71□□□□□ -1.02
CLN6-223ENST00000637823 COLCA2A8K830 154 aa8.71□□□□□ -1.02
CLN6-223ENST00000637823 KLLNB2CW77 178 aa8.71□□□□□ -1.02
CLN6-223ENST00000637823 IGKV3-20P01619 116 aa8.71□□□□□ -1.02
CLN6-223ENST00000637823 IGLL1P15814 213 aa8.71□□□□□ -1.02
CLN6-223ENST00000637823 RNASE4P34096 147 aaKnown RBP8.71□□□□□ -1.02
CLN6-223ENST00000637823 RPS20P60866 119 aaKnown RBP8.71□□□□□ -1.02
CLN6-223ENST00000637823 ZNF124Q15973 351 aa8.71□□□□□ -1.02
CLN6-223ENST00000637823 AMTNQ6UX39 209 aa8.71□□□□□ -1.02
CLN6-223ENST00000637823 OR2D3Q8NGH3 330 aa8.71□□□□□ -1.02
CLN6-223ENST00000637823 TSKUQ8WUA8 353 aa8.71□□□□□ -1.02
CLN6-223ENST00000637823 BTF3L4Q96K17 158 aa8.71□□□□□ -1.02
CLN6-223ENST00000637823 URGCP-MRPS24S4R325 110 aa8.71□□□□□ -1.02
CLN6-223ENST00000637823 NOTCH3Q9UM47 2321 aa8.71□□□□□ -1.02
CLN6-223ENST00000637823 TRBV24-1A0A075B6N3 115 aa8.7□□□□□ -1.02
CLN6-223ENST00000637823 TRAV21A0A0B4J279 112 aa8.7□□□□□ -1.02
CLN6-223ENST00000637823 XKRY2A2RUG3 117 aa8.7□□□□□ -1.02
CLN6-223ENST00000637823 FAM231BA6NCW3 169 aa8.7□□□□□ -1.02
CLN6-223ENST00000637823 ORM1P02763 201 aa8.7□□□□□ -1.02
CLN6-223ENST00000637823 CD7P09564 240 aa8.7□□□□□ -1.02
CLN6-223ENST00000637823 CDKN1BP46527 198 aa8.7□□□□□ -1.02
CLN6-223ENST00000637823 FAM3BP58499 235 aaPredicted RBP8.7□□□□□ -1.02
CLN6-223ENST00000637823 PRR9Q5T870 116 aa8.7□□□□□ -1.02
CLN6-223ENST00000637823 Q6AWC8 147 aa8.7□□□□□ -1.02
CLN6-223ENST00000637823 STHQ8IWL8 128 aa8.7□□□□□ -1.02
CLN6-223ENST00000637823 PYGO2Q9BRQ0 406 aa8.7□□□□□ -1.02
CLN6-223ENST00000637823 GFRA4Q9GZZ7 299 aa8.7□□□□□ -1.02
CLN6-223ENST00000637823 C19orf73Q9NVV2 129 aa8.7□□□□□ -1.02
CLN6-223ENST00000637823 C7orf71A4D174 169 aa8.69□□□□□ -1.02
CLN6-223ENST00000637823 J3KRW8 73 aa8.69□□□□□ -1.02
CLN6-223ENST00000637823 LINC01559Q495D7 138 aa8.69□□□□□ -1.02
CLN6-223ENST00000637823 PRR31Q5SQ13 230 aa8.69□□□□□ -1.02
CLN6-223ENST00000637823 GTSCR1Q86UQ5 136 aa8.69□□□□□ -1.02
CLN6-223ENST00000637823 TGIF2-C20orf24A0A0A6YYL0 155 aa8.68□□□□□ -1.02
CLN6-223ENST00000637823 CA1P00915 261 aaPredicted RBP8.68□□□□□ -1.02
CLN6-223ENST00000637823 AMBPP02760 352 aa8.68□□□□□ -1.02
CLN6-223ENST00000637823 FOXA3P55318 350 aaPredicted RBP8.68□□□□□ -1.02
CLN6-223ENST00000637823 RPL19P84098 196 aaKnown RBP8.68□□□□□ -1.02
CLN6-223ENST00000637823 SPINK13Q1W4C9 94 aa8.68□□□□□ -1.02
CLN6-223ENST00000637823 TRPT1Q86TN4 253 aaKnown RBP8.68□□□□□ -1.02
CLN6-223ENST00000637823 SREK1IP1Q8N9Q2 155 aaPredicted RBP8.68□□□□□ -1.02
CLN6-223ENST00000637823 NAT8BQ9UHF3 227 aa8.68□□□□□ -1.02
CLN6-223ENST00000637823 A0A1W2PPQ1 181 aa8.67□□□□□ -1.02
CLN6-223ENST00000637823 RBMY1BA6NDE4 496 aaKnown RBP8.67□□□□□ -1.02
CLN6-223ENST00000637823 RBMY1EA6NEQ0 496 aaKnown RBP8.67□□□□□ -1.02
CLN6-223ENST00000637823 M0R2Z0 102 aa8.67□□□□□ -1.02
CLN6-223ENST00000637823 ZNF324O75467 553 aaPredicted RBP8.67□□□□□ -1.02
CLN6-223ENST00000637823 CXCL1P09341 107 aa8.67□□□□□ -1.02
CLN6-223ENST00000637823 RBMY1DP0C7P1 496 aaKnown RBP8.67□□□□□ -1.02
CLN6-223ENST00000637823 TCL1AP56279 114 aa8.67□□□□□ -1.02
CLN6-223ENST00000637823 KIR3DS1Q14943 382 aa8.67□□□□□ -1.02
CLN6-223ENST00000637823 NUP35Q8NFH5 326 aa8.67□□□□□ -1.02
CLN6-223ENST00000637823 GTSF1Q8WW33 167 aa8.67□□□□□ -1.02
CLN6-223ENST00000637823 FAM210BQ96KR6 192 aa8.67□□□□□ -1.02
CLN6-223ENST00000637823 NEU1Q99519 415 aa8.67□□□□□ -1.02
CLN6-223ENST00000637823 MDFIQ99750 246 aa8.67□□□□□ -1.02
CLN6-223ENST00000637823 C11orf21Q9P2W6 132 aa8.67□□□□□ -1.02
CLN6-223ENST00000637823 TMSB15BA0A087X1C1 80 aa8.66□□□□□ -1.02
CLN6-223ENST00000637823 TRAV12-3A0A0B4J271 114 aa8.66□□□□□ -1.02
CLN6-223ENST00000637823 IGKV3D-20A0A0C4DH25 116 aa8.66□□□□□ -1.02
CLN6-223ENST00000637823 HIGD1CA8MV81 97 aa8.66□□□□□ -1.02
CLN6-223ENST00000637823 GZMBP10144 247 aa8.66□□□□□ -1.02
CLN6-223ENST00000637823 RAB5AP20339 215 aa8.66□□□□□ -1.02
CLN6-223ENST00000637823 NUTF2P61970 127 aaKnown RBP8.66□□□□□ -1.02
CLN6-223ENST00000637823 GFI1BQ5VTD9 330 aa8.66□□□□□ -1.02
CLN6-223ENST00000637823 Q6ZQT7 251 aa8.66□□□□□ -1.02
CLN6-223ENST00000637823 ZNF575Q86XF7 245 aa8.66□□□□□ -1.02
CLN6-223ENST00000637823 KCNS1Q96KK3 526 aa8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 95.6 ms