RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 NDFIP1Q9BT67 221 aa11.94□□□□□ -0.5
CLN3-251ENST00000636853 VPREB3Q9UKI3 123 aa11.94□□□□□ -0.5
CLN3-251ENST00000636853 SELENOKQ9Y6D0 94 aa11.94□□□□□ -0.5
CLN3-251ENST00000636853 COX11Q9Y6N1 276 aa11.94□□□□□ -0.5
CLN3-251ENST00000636853 PRRC2AP48634 2157 aaKnown RBP11.94□□□□□ -0.5
CLN3-251ENST00000636853 PSMB8P28062 276 aa11.94□□□□□ -0.5
CLN3-251ENST00000636853 RBX1P62877 108 aa11.94□□□□□ -0.5
CLN3-251ENST00000636853 AGPAT4-IT1Q9H0P7 198 aa11.94□□□□□ -0.5
CLN3-251ENST00000636853 TEX15Q9BXT5 2789 aa11.93□□□□□ -0.5
CLN3-251ENST00000636853 RBAKDNA6NC62 111 aa11.93□□□□□ -0.5
CLN3-251ENST00000636853 CCL25O15444 150 aa11.93□□□□□ -0.5
CLN3-251ENST00000636853 CDKN1BP46527 198 aa11.93□□□□□ -0.5
CLN3-251ENST00000636853 RPS20P60866 119 aaKnown RBP11.93□□□□□ -0.5
CLN3-251ENST00000636853 TM4SF20Q53R12 229 aa11.93□□□□□ -0.5
CLN3-251ENST00000636853 FAM19A2Q8N3H0 131 aa11.93□□□□□ -0.5
CLN3-251ENST00000636853 TRAV9-2A0A087WT02 112 aa11.93□□□□□ -0.5
CLN3-251ENST00000636853 HOXA3O43365 443 aaPredicted RBP11.93□□□□□ -0.5
CLN3-251ENST00000636853 RIGQ13278 110 aa11.93□□□□□ -0.5
CLN3-251ENST00000636853 LYZL1Q6UWQ5 148 aa11.93□□□□□ -0.5
CLN3-251ENST00000636853 C9orf139Q6ZV77 190 aa11.93□□□□□ -0.5
CLN3-251ENST00000636853 GPHB5Q86YW7 130 aa11.93□□□□□ -0.5
CLN3-251ENST00000636853 C20orf173Q96LM9 149 aa11.93□□□□□ -0.5
CLN3-251ENST00000636853 PEF1Q9UBV8 284 aaKnown RBP11.93□□□□□ -0.5
CLN3-251ENST00000636853 ZNF580Q9UK33 172 aa11.93□□□□□ -0.5
CLN3-251ENST00000636853 TENM4Q6N022 2769 aa11.92□□□□□ -0.5
CLN3-251ENST00000636853 MUC21A0A0G2JKD1 596 aa11.92□□□□□ -0.5
CLN3-251ENST00000636853 MUC21A0A140T8X8 626 aa11.92□□□□□ -0.5
CLN3-251ENST00000636853 BMI1P35226 326 aa11.92□□□□□ -0.5
CLN3-251ENST00000636853 MUC21Q5SSG8 566 aa11.92□□□□□ -0.5
CLN3-251ENST00000636853 CREBBPQ92793 2442 aa11.92□□□□□ -0.5
CLN3-251ENST00000636853 MXRA5Q9NR99 2828 aa11.92□□□□□ -0.5
CLN3-251ENST00000636853 LOC102724200A0A096LPH7 203 aaPredicted RBP11.91□□□□□ -0.5
CLN3-251ENST00000636853 EDN2P20800 178 aa11.91□□□□□ -0.5
CLN3-251ENST00000636853 RPL11P62913 178 aaKnown RBP11.91□□□□□ -0.5
CLN3-251ENST00000636853 Q6AWC8 147 aa11.91□□□□□ -0.5
CLN3-251ENST00000636853 MRPL53Q96EL3 112 aaKnown RBP11.91□□□□□ -0.5
CLN3-251ENST00000636853 CHD6Q8TD26 2715 aa11.91□□□□□ -0.5
CLN3-251ENST00000636853 IGKV3-7A0A075B6H7 116 aa11.91□□□□□ -0.5
CLN3-251ENST00000636853 ORM1P02763 201 aa11.91□□□□□ -0.5
CLN3-251ENST00000636853 NTF3P20783 257 aa11.91□□□□□ -0.5
CLN3-251ENST00000636853 C21orf62-AS1Q17RA5 79 aa11.91□□□□□ -0.5
CLN3-251ENST00000636853 DUX5Q96PT3 197 aa11.91□□□□□ -0.5
CLN3-251ENST00000636853 FABP5P3A8MUU1 101 aa11.9□□□□□ -0.5
CLN3-251ENST00000636853 M0QZ24 198 aa11.9□□□□□ -0.5
CLN3-251ENST00000636853 TMEM78Q5T7P6 136 aa11.9□□□□□ -0.5
CLN3-251ENST00000636853 RNASEKQ6P5S7 137 aaKnown RBP11.9□□□□□ -0.5
CLN3-251ENST00000636853 ZNF575Q86XF7 245 aa11.9□□□□□ -0.5
CLN3-251ENST00000636853 IGHV7-4-1A0A0J9YVY3 117 aa11.9□□□□□ -0.5
CLN3-251ENST00000636853 ZNF138P52744 262 aa11.9□□□□□ -0.5
CLN3-251ENST00000636853 PRSS57Q6UWY2 283 aa11.9□□□□□ -0.5
CLN3-251ENST00000636853 RHPN1-AS1Q9BWJ2 59 aa11.9□□□□□ -0.5
CLN3-251ENST00000636853 TMEM213A2RRL7 107 aa11.89□□□□□ -0.51
CLN3-251ENST00000636853 WFDC11Q8NEX6 87 aa11.89□□□□□ -0.51
CLN3-251ENST00000636853 RNASE8Q8TDE3 154 aaKnown RBP11.89□□□□□ -0.51
CLN3-251ENST00000636853 URB1-AS1Q96HZ7 61 aa11.89□□□□□ -0.51
CLN3-251ENST00000636853 ZNF702PQ9H963 129 aa11.89□□□□□ -0.51
CLN3-251ENST00000636853 DAZ1Q9NQZ3 744 aaKnown RBP11.89□□□□□ -0.51
CLN3-251ENST00000636853 HSBP1O75506 76 aa11.89□□□□□ -0.51
CLN3-251ENST00000636853 PLA2G2AP14555 144 aa11.89□□□□□ -0.51
CLN3-251ENST00000636853 DEFB1P60022 68 aa11.89□□□□□ -0.51
CLN3-251ENST00000636853 COTL1Q14019 142 aa11.89□□□□□ -0.51
CLN3-251ENST00000636853 C9orf47Q6ZRZ4 202 aa11.89□□□□□ -0.51
CLN3-251ENST00000636853 FAM181BA6NEQ2 426 aa11.88□□□□□ -0.51
CLN3-251ENST00000636853 SOCS3O14543 225 aa11.88□□□□□ -0.51
CLN3-251ENST00000636853 SRD5A1P18405 259 aa11.88□□□□□ -0.51
CLN3-251ENST00000636853 FER1L6-AS1Q8NA97 138 aa11.88□□□□□ -0.51
CLN3-251ENST00000636853 GATD1Q8NB37 220 aa11.88□□□□□ -0.51
CLN3-251ENST00000636853 A0A1B0GW15 77 aa11.87□□□□□ -0.51
CLN3-251ENST00000636853 FAM106AQ4KMX7 169 aa11.87□□□□□ -0.51
CLN3-251ENST00000636853 CLEC5AQ9NY25 188 aa11.87□□□□□ -0.51
CLN3-251ENST00000636853 SMPXQ9UHP9 88 aa11.87□□□□□ -0.51
CLN3-251ENST00000636853 CRXO43186 299 aaPredicted RBP11.86□□□□□ -0.51
CLN3-251ENST00000636853 IGLC6P0CF74 106 aa11.86□□□□□ -0.51
CLN3-251ENST00000636853 Q6ZQT7 251 aa11.86□□□□□ -0.51
CLN3-251ENST00000636853 PSMG3-AS1Q96PY0 264 aa11.86□□□□□ -0.51
CLN3-251ENST00000636853 ST20Q9HBF5 79 aa11.86□□□□□ -0.51
CLN3-251ENST00000636853 C11orf21Q9P2W6 132 aa11.86□□□□□ -0.51
CLN3-251ENST00000636853 C2orf70A6NJV1 201 aa11.86□□□□□ -0.51
CLN3-251ENST00000636853 J3QKU1 62 aa11.86□□□□□ -0.51
CLN3-251ENST00000636853 PPBPP02775 128 aa11.86□□□□□ -0.51
CLN3-251ENST00000636853 HINT1P49773 126 aaPredicted RBP11.86□□□□□ -0.51
CLN3-251ENST00000636853 IGKV3D-20A0A0C4DH25 116 aa11.85□□□□□ -0.51
CLN3-251ENST00000636853 TMEM89A2RUT3 159 aa11.85□□□□□ -0.51
CLN3-251ENST00000636853 M0R2Z0 102 aa11.85□□□□□ -0.51
CLN3-251ENST00000636853 SRSF2Q01130 221 aaKnown RBP11.85□□□□□ -0.51
CLN3-251ENST00000636853 FOXE3Q13461 319 aa11.85□□□□□ -0.51
CLN3-251ENST00000636853 TWIST1Q15672 202 aa11.85□□□□□ -0.51
CLN3-251ENST00000636853 J3KRW8 73 aa11.85□□□□□ -0.51
CLN3-251ENST00000636853 K7EMT4 169 aa11.85□□□□□ -0.51
CLN3-251ENST00000636853 LINC01559Q495D7 138 aa11.85□□□□□ -0.51
CLN3-251ENST00000636853 EBLN2Q6P2I7 272 aa11.85□□□□□ -0.51
CLN3-251ENST00000636853 ZNF493Q6ZR52 646 aa11.85□□□□□ -0.51
CLN3-251ENST00000636853 ITPR3Q14573 2671 aa11.85□□□□□ -0.51
CLN3-251ENST00000636853 TLN2Q9Y4G6 2542 aa11.85□□□□□ -0.51
CLN3-251ENST00000636853 KMT2BQ9UMN6 2715 aaPredicted RBP11.84□□□□□ -0.51
CLN3-251ENST00000636853 F6UB75 175 aa11.84□□□□□ -0.51
CLN3-251ENST00000636853 CSN3P07498 182 aa11.84□□□□□ -0.51
CLN3-251ENST00000636853 IGLL1P15814 213 aa11.84□□□□□ -0.51
CLN3-251ENST00000636853 PRR9Q5T870 116 aa11.84□□□□□ -0.51
CLN3-251ENST00000636853 AMN1Q8IY45 258 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms