RNA–Protein interactions for RNA: ENST00000621325.1

LIME1-210, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 2,410 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-210ENST00000621325 TRAV8-2A0A0B4J237 113 aa16.3■□□□□ 0.2
LIME1-210ENST00000621325 A0A1W2PS18 150 aa16.3■□□□□ 0.2
LIME1-210ENST00000621325 C3orf79P0CE67 100 aa16.3■□□□□ 0.2
LIME1-210ENST00000621325 FOXA3P55318 350 aaPredicted RBP16.3■□□□□ 0.2
LIME1-210ENST00000621325 DEFB113Q30KQ7 82 aa16.3■□□□□ 0.2
LIME1-210ENST00000621325 MPV17L2Q567V2 206 aa16.3■□□□□ 0.2
LIME1-210ENST00000621325 IGLV1-40P01703 118 aa16.3■□□□□ 0.2
LIME1-210ENST00000621325 ARMS2P0C7Q2 107 aa16.3■□□□□ 0.2
LIME1-210ENST00000621325 IGHV4-31P0DP07 118 aa16.3■□□□□ 0.2
LIME1-210ENST00000621325 PMCHP20382 165 aa16.3■□□□□ 0.2
LIME1-210ENST00000621325 SCGB2A2Q13296 93 aa16.3■□□□□ 0.2
LIME1-210ENST00000621325 TPPP3Q9BW30 176 aa16.3■□□□□ 0.2
LIME1-210ENST00000621325 CR1P17927 2039 aa16.3■□□□□ 0.2
LIME1-210ENST00000621325 H3BUA1 57 aa16.29■□□□□ 0.2
LIME1-210ENST00000621325 J3QLI3 93 aa16.29■□□□□ 0.2
LIME1-210ENST00000621325 AMTP48728 403 aa16.29■□□□□ 0.2
LIME1-210ENST00000621325 USMG5Q96IX5 58 aa16.29■□□□□ 0.2
LIME1-210ENST00000621325 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP16.29■□□□□ 0.2
LIME1-210ENST00000621325 SMAD7O15105 426 aaKnown RBP16.29■□□□□ 0.2
LIME1-210ENST00000621325 BRI3O95415 125 aa16.29■□□□□ 0.2
LIME1-210ENST00000621325 CFHR3Q02985 330 aa16.29■□□□□ 0.2
LIME1-210ENST00000621325 C8orf86Q6ZUL3 223 aa16.29■□□□□ 0.2
LIME1-210ENST00000621325 FER1L6-AS1Q8NA97 138 aa16.29■□□□□ 0.2
LIME1-210ENST00000621325 OR4X2Q8NGF9 303 aa16.29■□□□□ 0.2
LIME1-210ENST00000621325 KCNS1Q96KK3 526 aa16.29■□□□□ 0.2
LIME1-210ENST00000621325 SMPXQ9UHP9 88 aa16.29■□□□□ 0.2
LIME1-210ENST00000621325 FAM162BQ5T6X4 162 aa16.28■□□□□ 0.2
LIME1-210ENST00000621325 APCP25054 2843 aa16.28■□□□□ 0.2
LIME1-210ENST00000621325 HAX1O00165 279 aa16.28■□□□□ 0.2
LIME1-210ENST00000621325 COX8CQ7Z4L0 72 aa16.28■□□□□ 0.2
LIME1-210ENST00000621325 SLC50A1Q9BRV3 221 aa16.28■□□□□ 0.2
LIME1-210ENST00000621325 C10orf99Q6UWK7 81 aa16.27■□□□□ 0.2
LIME1-210ENST00000621325 FAM19A2Q8N3H0 131 aa16.27■□□□□ 0.2
LIME1-210ENST00000621325 GLMPQ8WWB7 406 aa16.27■□□□□ 0.2
LIME1-210ENST00000621325 CHD6Q8TD26 2715 aa16.27■□□□□ 0.2
LIME1-210ENST00000621325 NBPF19A0A087WUL8 3843 aa16.27■□□□□ 0.19
LIME1-210ENST00000621325 TRAV8-6A0A0B4J262 113 aa16.27■□□□□ 0.19
LIME1-210ENST00000621325 A0A1B0GUT8 65 aa16.27■□□□□ 0.19
LIME1-210ENST00000621325 TMEM189A5PLL7 270 aa16.26■□□□□ 0.19
LIME1-210ENST00000621325 NDUFA4O00483 81 aa16.26■□□□□ 0.19
LIME1-210ENST00000621325 BEX4Q9NWD9 120 aaPredicted RBP16.26■□□□□ 0.19
LIME1-210ENST00000621325 MXRA5Q9NR99 2828 aa16.26■□□□□ 0.19
LIME1-210ENST00000621325 KLF5Q13887 457 aaPredicted RBP16.26■□□□□ 0.19
LIME1-210ENST00000621325 DOPEY2Q9Y3R5 2298 aa16.26■□□□□ 0.19
LIME1-210ENST00000621325 TEX15Q9BXT5 2789 aa16.25■□□□□ 0.19
LIME1-210ENST00000621325 MUC21A0A0G2JKD1 596 aa16.25■□□□□ 0.19
LIME1-210ENST00000621325 MUC21A0A140T8X8 626 aa16.25■□□□□ 0.19
LIME1-210ENST00000621325 FBLL1A6NHQ2 334 aaKnown RBP16.25■□□□□ 0.19
LIME1-210ENST00000621325 ZNF324O75467 553 aaPredicted RBP16.25■□□□□ 0.19
LIME1-210ENST00000621325 MUC21Q5SSG8 566 aa16.25■□□□□ 0.19
LIME1-210ENST00000621325 FSHBP01225 129 aa16.24■□□□□ 0.19
LIME1-210ENST00000621325 IGLL1P15814 213 aa16.24■□□□□ 0.19
LIME1-210ENST00000621325 IL17RELQ6ZVW7 336 aa16.24■□□□□ 0.19
LIME1-210ENST00000621325 Q96MF0 132 aa16.24■□□□□ 0.19
LIME1-210ENST00000621325 AGPAT4-IT1Q9H0P7 198 aa16.24■□□□□ 0.19
LIME1-210ENST00000621325 A0A1B0GV72 72 aa16.24■□□□□ 0.19
LIME1-210ENST00000621325 ZNF575Q86XF7 245 aa16.24■□□□□ 0.19
LIME1-210ENST00000621325 TENM4Q6N022 2769 aa16.23■□□□□ 0.19
LIME1-210ENST00000621325 HIST2H2BCQ6DN03 193 aa16.23■□□□□ 0.19
LIME1-210ENST00000621325 LYZL1Q6UWQ5 148 aa16.23■□□□□ 0.19
LIME1-210ENST00000621325 DEFB125Q8N687 156 aa16.23■□□□□ 0.19
LIME1-210ENST00000621325 NUDT3O95989 172 aa16.23■□□□□ 0.19
LIME1-210ENST00000621325 NTF3P20783 257 aa16.23■□□□□ 0.19
LIME1-210ENST00000621325 GPHB5Q86YW7 130 aa16.23■□□□□ 0.19
LIME1-210ENST00000621325 KRTAP1-3Q8IUG1 177 aa16.23■□□□□ 0.19
LIME1-210ENST00000621325 URB1-AS1Q96HZ7 61 aa16.23■□□□□ 0.19
LIME1-210ENST00000621325 ZNF469Q96JG9 3925 aaPredicted RBP16.22■□□□□ 0.19
LIME1-210ENST00000621325 A0A0G2JLM5 398 aa16.22■□□□□ 0.19
LIME1-210ENST00000621325 RIGQ13278 110 aa16.22■□□□□ 0.19
LIME1-210ENST00000621325 C16orf92Q96LL3 132 aa16.22■□□□□ 0.19
LIME1-210ENST00000621325 C20orf173Q96LM9 149 aa16.22■□□□□ 0.19
LIME1-210ENST00000621325 NPFFR1Q9GZQ6 430 aa16.22■□□□□ 0.19
LIME1-210ENST00000621325 RBAKDNA6NC62 111 aa16.21■□□□□ 0.19
LIME1-210ENST00000621325 BVES-AS1Q5T3Y7 98 aa16.21■□□□□ 0.19
LIME1-210ENST00000621325 RNASEKQ6P5S7 137 aaKnown RBP16.21■□□□□ 0.19
LIME1-210ENST00000621325 NDFIP1Q9BT67 221 aa16.21■□□□□ 0.19
LIME1-210ENST00000621325 PRRC2AP48634 2157 aaKnown RBP16.21■□□□□ 0.19
LIME1-210ENST00000621325 TRAV26-1A0A087WT03 109 aa16.21■□□□□ 0.19
LIME1-210ENST00000621325 AZU1P20160 251 aa16.21■□□□□ 0.19
LIME1-210ENST00000621325 PSMB8P28062 276 aa16.21■□□□□ 0.19
LIME1-210ENST00000621325 TM4SF20Q53R12 229 aa16.21■□□□□ 0.19
LIME1-210ENST00000621325 LRRC75A-AS1Q8N1F1 130 aa16.21■□□□□ 0.19
LIME1-210ENST00000621325 TLN2Q9Y4G6 2542 aa16.21■□□□□ 0.19
LIME1-210ENST00000621325 EDN2P20800 178 aa16.2■□□□□ 0.18
LIME1-210ENST00000621325 TMEM213A2RRL7 107 aa16.2■□□□□ 0.18
LIME1-210ENST00000621325 CRYBA4P53673 196 aa16.2■□□□□ 0.18
LIME1-210ENST00000621325 SMAGPQ0VAQ4 97 aa16.2■□□□□ 0.18
LIME1-210ENST00000621325 Q6AWC8 147 aa16.2■□□□□ 0.18
LIME1-210ENST00000621325 GTSF1LQ9H1H1 148 aa16.2■□□□□ 0.18
LIME1-210ENST00000621325 TRAV9-2A0A087WT02 112 aa16.19■□□□□ 0.18
LIME1-210ENST00000621325 VPREB3Q9UKI3 123 aa16.19■□□□□ 0.18
LIME1-210ENST00000621325 ORM1P02763 201 aa16.19■□□□□ 0.18
LIME1-210ENST00000621325 Q6YL49 198 aa16.19■□□□□ 0.18
LIME1-210ENST00000621325 PSMG3-AS1Q96PY0 264 aa16.19■□□□□ 0.18
LIME1-210ENST00000621325 HSBP1O75506 76 aa16.18■□□□□ 0.18
LIME1-210ENST00000621325 MRPL53Q96EL3 112 aaKnown RBP16.18■□□□□ 0.18
LIME1-210ENST00000621325 ZNF580Q9UK33 172 aa16.18■□□□□ 0.18
LIME1-210ENST00000621325 IGKV3-7A0A075B6H7 116 aa16.18■□□□□ 0.18
LIME1-210ENST00000621325 FABP5P3A8MUU1 101 aa16.18■□□□□ 0.18
LIME1-210ENST00000621325 DEFB1P60022 68 aa16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms