RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 ZNF124Q15973 351 aa10.59□□□□□ -0.71
USP39-220ENST00000613444 FAM162BQ5T6X4 162 aa10.59□□□□□ -0.71
USP39-220ENST00000613444 APRG1Q8IVJ8 170 aa10.59□□□□□ -0.71
USP39-220ENST00000613444 PYGO2Q9BRQ0 406 aa10.59□□□□□ -0.71
USP39-220ENST00000613444 RPP21Q9H633 154 aaKnown RBP10.59□□□□□ -0.71
USP39-220ENST00000613444 SMIM27A0A1W2PRY6 76 aa10.58□□□□□ -0.72
USP39-220ENST00000613444 CT83Q5H943 113 aa10.58□□□□□ -0.72
USP39-220ENST00000613444 ZNF575Q86XF7 245 aa10.58□□□□□ -0.72
USP39-220ENST00000613444 WFDC9Q8NEX5 89 aa10.58□□□□□ -0.72
USP39-220ENST00000613444 DAZAP1Q96EP5 407 aaKnown RBP10.58□□□□□ -0.72
USP39-220ENST00000613444 TRBV24-1A0A075B6N3 115 aa10.58□□□□□ -0.72
USP39-220ENST00000613444 A8MTW9 85 aa10.58□□□□□ -0.72
USP39-220ENST00000613444 BEAN1Q3B7T3 259 aa10.58□□□□□ -0.72
USP39-220ENST00000613444 EBLN2Q6P2I7 272 aa10.58□□□□□ -0.72
USP39-220ENST00000613444 ANK2Q01484 3957 aa10.57□□□□□ -0.72
USP39-220ENST00000613444 RPL19P84098 196 aaKnown RBP10.57□□□□□ -0.72
USP39-220ENST00000613444 KIR3DS1Q14943 382 aa10.57□□□□□ -0.72
USP39-220ENST00000613444 Q6ZQT7 251 aa10.57□□□□□ -0.72
USP39-220ENST00000613444 OR4B1Q8NGF8 309 aa10.57□□□□□ -0.72
USP39-220ENST00000613444 TMEM158Q8WZ71 300 aa10.57□□□□□ -0.72
USP39-220ENST00000613444 ODF3Q96PU9 254 aa10.57□□□□□ -0.72
USP39-220ENST00000613444 KNCNA6PVL3 124 aa10.56□□□□□ -0.72
USP39-220ENST00000613444 KLLNB2CW77 178 aa10.56□□□□□ -0.72
USP39-220ENST00000613444 HLA-DRB4P13762 266 aa10.56□□□□□ -0.72
USP39-220ENST00000613444 AMTNQ6UX39 209 aa10.56□□□□□ -0.72
USP39-220ENST00000613444 C3orf56Q8N813 242 aa10.56□□□□□ -0.72
USP39-220ENST00000613444 TSKUQ8WUA8 353 aa10.56□□□□□ -0.72
USP39-220ENST00000613444 HLA-DRB4X5D2U9 266 aa10.56□□□□□ -0.72
USP39-220ENST00000613444 A0A1W2PPQ1 181 aa10.56□□□□□ -0.72
USP39-220ENST00000613444 FABP5P3A8MUU1 101 aa10.56□□□□□ -0.72
USP39-220ENST00000613444 H3BMM0 161 aa10.56□□□□□ -0.72
USP39-220ENST00000613444 S100PP25815 95 aa10.56□□□□□ -0.72
USP39-220ENST00000613444 GTSF1Q8WW33 167 aa10.56□□□□□ -0.72
USP39-220ENST00000613444 C11orf21Q9P2W6 132 aa10.56□□□□□ -0.72
USP39-220ENST00000613444 DUSP14O95147 198 aaKnown RBP10.55□□□□□ -0.72
USP39-220ENST00000613444 INSL3P51460 131 aa10.55□□□□□ -0.72
USP39-220ENST00000613444 ACTL10Q5JWF8 245 aa10.55□□□□□ -0.72
USP39-220ENST00000613444 KCNIP4Q6PIL6 250 aa10.55□□□□□ -0.72
USP39-220ENST00000613444 SHISA2Q6UWI4 295 aa10.55□□□□□ -0.72
USP39-220ENST00000613444 C12orf54Q6X4T0 127 aa10.55□□□□□ -0.72
USP39-220ENST00000613444 OR2D3Q8NGH3 330 aa10.55□□□□□ -0.72
USP39-220ENST00000613444 C19orf73Q9NVV2 129 aa10.55□□□□□ -0.72
USP39-220ENST00000613444 GZMBP10144 247 aa10.55□□□□□ -0.72
USP39-220ENST00000613444 TCL1AP56279 114 aa10.55□□□□□ -0.72
USP39-220ENST00000613444 C9orf66Q5T8R8 295 aa10.55□□□□□ -0.72
USP39-220ENST00000613444 NEU1Q99519 415 aa10.55□□□□□ -0.72
USP39-220ENST00000613444 RBMY1BA6NDE4 496 aaKnown RBP10.54□□□□□ -0.72
USP39-220ENST00000613444 RBMY1EA6NEQ0 496 aaKnown RBP10.54□□□□□ -0.72
USP39-220ENST00000613444 A8MWL6 223 aa10.54□□□□□ -0.72
USP39-220ENST00000613444 IGKV3-20P01619 116 aa10.54□□□□□ -0.72
USP39-220ENST00000613444 CD7P09564 240 aa10.54□□□□□ -0.72
USP39-220ENST00000613444 RBMY1DP0C7P1 496 aaKnown RBP10.54□□□□□ -0.72
USP39-220ENST00000613444 RAB5AP20339 215 aa10.54□□□□□ -0.72
USP39-220ENST00000613444 FAM210BQ96KR6 192 aa10.54□□□□□ -0.72
USP39-220ENST00000613444 FAM110AQ9BQ89 295 aa10.54□□□□□ -0.72
USP39-220ENST00000613444 PKD1L1Q8TDX9 2849 aa10.54□□□□□ -0.72
USP39-220ENST00000613444 TRAV9-1A0A075B6T8 112 aa10.53□□□□□ -0.72
USP39-220ENST00000613444 IGKV3D-20A0A0C4DH25 116 aa10.53□□□□□ -0.72
USP39-220ENST00000613444 J3KRW8 73 aa10.53□□□□□ -0.72
USP39-220ENST00000613444 LINC01559Q495D7 138 aa10.53□□□□□ -0.72
USP39-220ENST00000613444 Q6AWC8 147 aa10.53□□□□□ -0.72
USP39-220ENST00000613444 NUP35Q8NFH5 326 aa10.53□□□□□ -0.72
USP39-220ENST00000613444 GFRA4Q9GZZ7 299 aa10.53□□□□□ -0.72
USP39-220ENST00000613444 FAM231BA6NCW3 169 aa10.53□□□□□ -0.72
USP39-220ENST00000613444 HIGD1CA8MV81 97 aa10.53□□□□□ -0.72
USP39-220ENST00000613444 TYMSP04818 313 aa10.53□□□□□ -0.72
USP39-220ENST00000613444 GPX1P07203 203 aa10.53□□□□□ -0.72
USP39-220ENST00000613444 FOXA3P55318 350 aaPredicted RBP10.53□□□□□ -0.72
USP39-220ENST00000613444 TMEM189A5PLL7 270 aa10.52□□□□□ -0.72
USP39-220ENST00000613444 OR11H12B2RN74 326 aa10.52□□□□□ -0.72
USP39-220ENST00000613444 M0R2Z0 102 aa10.52□□□□□ -0.73
USP39-220ENST00000613444 WIPF1O43516 503 aa10.52□□□□□ -0.73
USP39-220ENST00000613444 FRMD6-AS1P0C7T7 363 aa10.52□□□□□ -0.73
USP39-220ENST00000613444 RNASE4P34096 147 aaKnown RBP10.52□□□□□ -0.73
USP39-220ENST00000613444 LEPP41159 167 aa10.52□□□□□ -0.73
USP39-220ENST00000613444 BTF3L4Q96K17 158 aa10.52□□□□□ -0.73
USP39-220ENST00000613444 CLUHP3Q96NS8 147 aa10.52□□□□□ -0.73
USP39-220ENST00000613444 NAT8BQ9UHF3 227 aa10.52□□□□□ -0.73
USP39-220ENST00000613444 TMSB15BA0A087X1C1 80 aa10.51□□□□□ -0.73
USP39-220ENST00000613444 TRAV21A0A0B4J279 112 aa10.51□□□□□ -0.73
USP39-220ENST00000613444 ZNF324O75467 553 aaPredicted RBP10.51□□□□□ -0.73
USP39-220ENST00000613444 ORM1P02763 201 aa10.51□□□□□ -0.73
USP39-220ENST00000613444 CDKN1BP46527 198 aa10.51□□□□□ -0.73
USP39-220ENST00000613444 CMC4P56277 68 aaPredicted RBP10.51□□□□□ -0.73
USP39-220ENST00000613444 SPINK13Q1W4C9 94 aa10.51□□□□□ -0.73
USP39-220ENST00000613444 GFI1BQ5VTD9 330 aa10.51□□□□□ -0.73
USP39-220ENST00000613444 MCRIP2Q9BUT9 160 aaKnown RBP10.51□□□□□ -0.73
USP39-220ENST00000613444 IGLL1P15814 213 aa10.5□□□□□ -0.73
USP39-220ENST00000613444 WFDC10AQ9H1F0 79 aa10.5□□□□□ -0.73
USP39-220ENST00000613444 TRAV12-2A0A075B6T6 113 aa10.5□□□□□ -0.73
USP39-220ENST00000613444 CRXO43186 299 aaPredicted RBP10.5□□□□□ -0.73
USP39-220ENST00000613444 TRPT1Q86TN4 253 aaKnown RBP10.5□□□□□ -0.73
USP39-220ENST00000613444 C7orf71A4D174 169 aa10.49□□□□□ -0.73
USP39-220ENST00000613444 SPINK4O60575 86 aa10.49□□□□□ -0.73
USP39-220ENST00000613444 TSPOP30536 169 aa10.49□□□□□ -0.73
USP39-220ENST00000613444 SRD5A3Q9H8P0 318 aa10.49□□□□□ -0.73
USP39-220ENST00000613444 IGLC6P0CF74 106 aa10.49□□□□□ -0.73
USP39-220ENST00000613444 RPS10P46783 165 aaKnown RBP10.49□□□□□ -0.73
USP39-220ENST00000613444 RPS20P60866 119 aaKnown RBP10.49□□□□□ -0.73
USP39-220ENST00000613444 PGLYRP4Q96LB8 373 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms