RNA–Protein interactions for RNA: ENST00000612273.1

COL6A1-207, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL6A1, Length 3,251 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-207ENST00000612273 LCNL1Q6ZST4 164 aa10.86□□□□□ -0.67
COL6A1-207ENST00000612273 AGPAT4-IT1Q9H0P7 198 aa10.86□□□□□ -0.67
COL6A1-207ENST00000612273 MSRB2Q9Y3D2 182 aa10.86□□□□□ -0.67
COL6A1-207ENST00000612273 EFNA4P52798 201 aa10.86□□□□□ -0.67
COL6A1-207ENST00000612273 TTC9CQ8N5M4 171 aa10.86□□□□□ -0.67
COL6A1-207ENST00000612273 Q8N9W7 124 aa10.86□□□□□ -0.67
COL6A1-207ENST00000612273 PAX2Q02962 417 aa10.85□□□□□ -0.67
COL6A1-207ENST00000612273 SPANXN1Q5VSR9 72 aa10.85□□□□□ -0.67
COL6A1-207ENST00000612273 CCDC144NLQ6NUI1 221 aa10.85□□□□□ -0.67
COL6A1-207ENST00000612273 TLN2Q9Y4G6 2542 aa10.85□□□□□ -0.67
COL6A1-207ENST00000612273 SETD2Q9BYW2 2564 aaPredicted RBP10.85□□□□□ -0.67
COL6A1-207ENST00000612273 M0R381 172 aa10.85□□□□□ -0.67
COL6A1-207ENST00000612273 IGHV3-11P01762 117 aa10.85□□□□□ -0.67
COL6A1-207ENST00000612273 BRD3OSQ6XYD6 125 aa10.85□□□□□ -0.67
COL6A1-207ENST00000612273 RNF185Q96GF1 192 aa10.85□□□□□ -0.67
COL6A1-207ENST00000612273 MEGF9Q9H1U4 602 aa10.85□□□□□ -0.67
COL6A1-207ENST00000612273 IGKV3D-20A0A0C4DH25 116 aa10.85□□□□□ -0.67
COL6A1-207ENST00000612273 A0A0G2JLM5 398 aa10.85□□□□□ -0.67
COL6A1-207ENST00000612273 H3BVH4 76 aa10.85□□□□□ -0.67
COL6A1-207ENST00000612273 SRD5A1P18405 259 aa10.85□□□□□ -0.67
COL6A1-207ENST00000612273 ZFYVE26Q68DK2 2539 aa10.85□□□□□ -0.67
COL6A1-207ENST00000612273 MYO18BQ8IUG5 2567 aa10.85□□□□□ -0.67
COL6A1-207ENST00000612273 USP9XQ93008 2570 aaPredicted RBP10.84□□□□□ -0.67
COL6A1-207ENST00000612273 TRAV40A0A0B4J280 105 aa10.84□□□□□ -0.67
COL6A1-207ENST00000612273 ODF3BA8MYP8 253 aa10.84□□□□□ -0.67
COL6A1-207ENST00000612273 LGALS9BQ3B8N2 356 aa10.84□□□□□ -0.67
COL6A1-207ENST00000612273 ZC2HC1BQ5TFG8 222 aa10.84□□□□□ -0.67
COL6A1-207ENST00000612273 LGALS9CQ6DKI2 356 aa10.84□□□□□ -0.67
COL6A1-207ENST00000612273 ZNF575Q86XF7 245 aa10.84□□□□□ -0.67
COL6A1-207ENST00000612273 MTURNQ8N3F0 131 aa10.84□□□□□ -0.67
COL6A1-207ENST00000612273 SRSF8Q9BRL6 282 aaKnown RBP10.84□□□□□ -0.67
COL6A1-207ENST00000612273 CSMD2Q7Z408 3487 aa10.84□□□□□ -0.67
COL6A1-207ENST00000612273 TRBV6-1A0A0K0K1D8 114 aa10.83□□□□□ -0.67
COL6A1-207ENST00000612273 BUB3O43684 328 aa10.83□□□□□ -0.67
COL6A1-207ENST00000612273 GOSR1O95249 250 aa10.83□□□□□ -0.67
COL6A1-207ENST00000612273 LY6EQ16553 131 aa10.83□□□□□ -0.67
COL6A1-207ENST00000612273 TMEM78Q5T7P6 136 aa10.83□□□□□ -0.67
COL6A1-207ENST00000612273 BPESC1Q9GZL8 116 aa10.83□□□□□ -0.67
COL6A1-207ENST00000612273 AGRNO00468 2067 aa10.83□□□□□ -0.68
COL6A1-207ENST00000612273 A6NDN8 102 aa10.83□□□□□ -0.68
COL6A1-207ENST00000612273 IGLC6P0CF74 106 aa10.83□□□□□ -0.68
COL6A1-207ENST00000612273 CDKN1BP46527 198 aa10.83□□□□□ -0.68
COL6A1-207ENST00000612273 FXYD2P54710 66 aa10.83□□□□□ -0.68
COL6A1-207ENST00000612273 LY6DQ14210 128 aa10.83□□□□□ -0.68
COL6A1-207ENST00000612273 BOD1L2Q8IYS8 172 aa10.83□□□□□ -0.68
COL6A1-207ENST00000612273 UTP20O75691 2785 aaKnown RBP10.83□□□□□ -0.68
COL6A1-207ENST00000612273 TMEM8BA6NDV4 472 aa10.82□□□□□ -0.68
COL6A1-207ENST00000612273 M0R1W7 72 aa10.82□□□□□ -0.68
COL6A1-207ENST00000612273 SCGB2A1O75556 95 aa10.82□□□□□ -0.68
COL6A1-207ENST00000612273 RPL24P83731 157 aaKnown RBP10.82□□□□□ -0.68
COL6A1-207ENST00000612273 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa10.82□□□□□ -0.68
COL6A1-207ENST00000612273 C16orf92Q96LL3 132 aa10.82□□□□□ -0.68
COL6A1-207ENST00000612273 CCDC140Q96MF4 163 aa10.82□□□□□ -0.68
COL6A1-207ENST00000612273 NHP2Q9NX24 153 aaKnown RBP10.82□□□□□ -0.68
COL6A1-207ENST00000612273 F6UB75 175 aa10.82□□□□□ -0.68
COL6A1-207ENST00000612273 FLNCQ14315 2725 aa10.82□□□□□ -0.68
COL6A1-207ENST00000612273 SMIM17P0DL12 118 aa10.82□□□□□ -0.68
COL6A1-207ENST00000612273 OR2K2Q8NGT1 345 aa10.82□□□□□ -0.68
COL6A1-207ENST00000612273 MRPL35Q9NZE8 188 aaKnown RBP10.82□□□□□ -0.68
COL6A1-207ENST00000612273 SPCS1Q9Y6A9 102 aa10.82□□□□□ -0.68
COL6A1-207ENST00000612273 U3KQK5 164 aa10.82□□□□□ -0.68
COL6A1-207ENST00000612273 MYO9AB2RTY4 2548 aa10.81□□□□□ -0.68
COL6A1-207ENST00000612273 TRBV12-3P01733 135 aa10.81□□□□□ -0.68
COL6A1-207ENST00000612273 SEC11AP67812 179 aa10.81□□□□□ -0.68
COL6A1-207ENST00000612273 SFTA2Q6UW10 78 aa10.81□□□□□ -0.68
COL6A1-207ENST00000612273 C8orf86Q6ZUL3 223 aa10.81□□□□□ -0.68
COL6A1-207ENST00000612273 ZNF502Q8TBZ5 544 aa10.81□□□□□ -0.68
COL6A1-207ENST00000612273 ZANQ9Y493 2812 aa10.8□□□□□ -0.68
COL6A1-207ENST00000612273 S100A4P26447 101 aaKnown RBP10.8□□□□□ -0.68
COL6A1-207ENST00000612273 NEGR1Q7Z3B1 354 aa10.8□□□□□ -0.68
COL6A1-207ENST00000612273 RPS20P60866 119 aaKnown RBP10.8□□□□□ -0.68
COL6A1-207ENST00000612273 HSD52Q0P140 79 aa10.8□□□□□ -0.68
COL6A1-207ENST00000612273 ODF1Q14990 250 aa10.8□□□□□ -0.68
COL6A1-207ENST00000612273 C9orf118A6NHY6 69 aa10.8□□□□□ -0.68
COL6A1-207ENST00000612273 MGPP08493 103 aa10.8□□□□□ -0.68
COL6A1-207ENST00000612273 SMIM15Q7Z3B0 74 aa10.8□□□□□ -0.68
COL6A1-207ENST00000612273 METTL26Q96S19 204 aa10.8□□□□□ -0.68
COL6A1-207ENST00000612273 C2CD3Q4AC94 2353 aa10.79□□□□□ -0.68
COL6A1-207ENST00000612273 IGKCP01834 107 aa10.79□□□□□ -0.68
COL6A1-207ENST00000612273 ADAMTSL5Q6ZMM2 481 aa10.79□□□□□ -0.68
COL6A1-207ENST00000612273 ZFAND3Q9H8U3 227 aa10.79□□□□□ -0.68
COL6A1-207ENST00000612273 CLPSL1A2RUU4 121 aa10.79□□□□□ -0.68
COL6A1-207ENST00000612273 EMP1P54849 157 aa10.79□□□□□ -0.68
COL6A1-207ENST00000612273 PRR9Q5T870 116 aa10.79□□□□□ -0.68
COL6A1-207ENST00000612273 GTF2H5Q6ZYL4 71 aa10.79□□□□□ -0.68
COL6A1-207ENST00000612273 K7ERU9 68 aa10.78□□□□□ -0.68
COL6A1-207ENST00000612273 COTL1Q14019 142 aa10.78□□□□□ -0.68
COL6A1-207ENST00000612273 C14orf178Q8N769 122 aaPredicted RBP10.78□□□□□ -0.68
COL6A1-207ENST00000612273 PAX8Q06710 450 aa10.78□□□□□ -0.68
COL6A1-207ENST00000612273 UNQ9165/PRO28630Q6UXU0 137 aa10.78□□□□□ -0.68
COL6A1-207ENST00000612273 Q8N6K4 173 aa10.78□□□□□ -0.68
COL6A1-207ENST00000612273 GATD1Q8NB37 220 aa10.78□□□□□ -0.68
COL6A1-207ENST00000612273 MYOZ3Q8TDC0 251 aa10.78□□□□□ -0.68
COL6A1-207ENST00000612273 CHAC1Q9BUX1 264 aa10.78□□□□□ -0.68
COL6A1-207ENST00000612273 PTPN13Q12923 2485 aa10.77□□□□□ -0.68
COL6A1-207ENST00000612273 TRAV8-2A0A0B4J237 113 aa10.77□□□□□ -0.68
COL6A1-207ENST00000612273 MAPKAPK5-AS1Q8N8E1 139 aa10.77□□□□□ -0.68
COL6A1-207ENST00000612273 HHLA3Q9XRX5 114 aa10.77□□□□□ -0.68
COL6A1-207ENST00000612273 TRBV25-1A0A075B6N4 114 aa10.77□□□□□ -0.69
COL6A1-207ENST00000612273 NXT2Q9NPJ8 142 aaKnown RBP10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms