RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 IFNA1P01562 189 aa2.75□□□□□ -1.97
LINC00540-201ENST00000611481 GZMHP20718 246 aa2.75□□□□□ -1.97
LINC00540-201ENST00000611481 CXCL5P42830 114 aa2.75□□□□□ -1.97
LINC00540-201ENST00000611481 RPL5P46777 297 aaKnown RBP2.75□□□□□ -1.97
LINC00540-201ENST00000611481 GZMMP51124 257 aa2.75□□□□□ -1.97
LINC00540-201ENST00000611481 CDK5Q00535 292 aa2.75□□□□□ -1.97
LINC00540-201ENST00000611481 ESRGQ1W209 222 aa2.75□□□□□ -1.97
LINC00540-201ENST00000611481 MPV17L2Q567V2 206 aa2.75□□□□□ -1.97
LINC00540-201ENST00000611481 FAM78BQ5VT40 261 aa2.75□□□□□ -1.97
LINC00540-201ENST00000611481 PRNTQ86SH4 94 aa2.75□□□□□ -1.97
LINC00540-201ENST00000611481 OR10A6Q8NH74 314 aa2.75□□□□□ -1.97
LINC00540-201ENST00000611481 MCFD2Q8NI22 146 aa2.75□□□□□ -1.97
LINC00540-201ENST00000611481 COQ8AQ8NI60 647 aa2.75□□□□□ -1.97
LINC00540-201ENST00000611481 BORCS7Q96B45 105 aa2.75□□□□□ -1.97
LINC00540-201ENST00000611481 MRPS24Q96EL2 167 aaKnown RBP2.75□□□□□ -1.97
LINC00540-201ENST00000611481 BORCS8Q96FH0 119 aa2.75□□□□□ -1.97
LINC00540-201ENST00000611481 CPNE2Q96FN4 548 aaPredicted RBP2.75□□□□□ -1.97
LINC00540-201ENST00000611481 DIRAS2Q96HU8 199 aa2.75□□□□□ -1.97
LINC00540-201ENST00000611481 CAMK2N2Q96S95 79 aa2.75□□□□□ -1.97
LINC00540-201ENST00000611481 CHAC1Q9BUX1 264 aa2.75□□□□□ -1.97
LINC00540-201ENST00000611481 ENY2Q9NPA8 101 aa2.75□□□□□ -1.97
LINC00540-201ENST00000611481 BIN3Q9NQY0 253 aa2.75□□□□□ -1.97
LINC00540-201ENST00000611481 TAS2R1Q9NYW7 299 aa2.75□□□□□ -1.97
LINC00540-201ENST00000611481 MACF1Q9UPN3 7388 aaKnown RBP2.74□□□□□ -1.97
LINC00540-201ENST00000611481 IGHV3OR16-8A0A075B7F1 116 aa2.74□□□□□ -1.97
LINC00540-201ENST00000611481 IGHV3-66A0A0C4DH42 116 aa2.74□□□□□ -1.97
LINC00540-201ENST00000611481 KNCNA6PVL3 124 aa2.74□□□□□ -1.97
LINC00540-201ENST00000611481 ZNF207O43670 478 aaKnown RBP2.74□□□□□ -1.97
LINC00540-201ENST00000611481 ATG12O94817 140 aa2.74□□□□□ -1.97
LINC00540-201ENST00000611481 ZNF682O95780 498 aa2.74□□□□□ -1.97
LINC00540-201ENST00000611481 IGLV3-1P01715 115 aa2.74□□□□□ -1.97
LINC00540-201ENST00000611481 TTRP02766 147 aa2.74□□□□□ -1.97
LINC00540-201ENST00000611481 CRYGDP07320 174 aa2.74□□□□□ -1.97
LINC00540-201ENST00000611481 NBEAP1P0C6P0 100 aa2.74□□□□□ -1.97
LINC00540-201ENST00000611481 SAA2P0DJI9 122 aaPredicted RBP2.74□□□□□ -1.97
LINC00540-201ENST00000611481 ZBTB25P24278 435 aa2.74□□□□□ -1.97
LINC00540-201ENST00000611481 MNAT1P51948 309 aa2.74□□□□□ -1.97
LINC00540-201ENST00000611481 MP68P56378 58 aa2.74□□□□□ -1.97
LINC00540-201ENST00000611481 HLA-DRB3P79483 266 aa2.74□□□□□ -1.97
LINC00540-201ENST00000611481 FABP5Q01469 135 aa2.74□□□□□ -1.97
LINC00540-201ENST00000611481 PMAIP1Q13794 54 aa2.74□□□□□ -1.97
LINC00540-201ENST00000611481 HIGD2BQ4VC39 106 aa2.74□□□□□ -1.97
LINC00540-201ENST00000611481 ZNF833PQ6ZTB9 187 aa2.74□□□□□ -1.97
LINC00540-201ENST00000611481 CEND1Q8N111 149 aa2.74□□□□□ -1.97
LINC00540-201ENST00000611481 Q8N814 137 aa2.74□□□□□ -1.97
LINC00540-201ENST00000611481 SUMF2Q8NBJ7 301 aa2.74□□□□□ -1.97
LINC00540-201ENST00000611481 OR51H1Q8NH63 302 aa2.74□□□□□ -1.97
LINC00540-201ENST00000611481 RHOXF1Q8NHV9 184 aa2.74□□□□□ -1.97
LINC00540-201ENST00000611481 THEM6Q8WUY1 208 aa2.74□□□□□ -1.97
LINC00540-201ENST00000611481 RBPMSQ93062 196 aaKnown RBP2.74□□□□□ -1.97
LINC00540-201ENST00000611481 C16orf74Q96GX8 76 aa2.74□□□□□ -1.97
LINC00540-201ENST00000611481 LINC01600Q96MT4 127 aa2.74□□□□□ -1.97
LINC00540-201ENST00000611481 GNB1LQ9BYB4 327 aa2.74□□□□□ -1.97
LINC00540-201ENST00000611481 OR52D1Q9H346 318 aa2.74□□□□□ -1.97
LINC00540-201ENST00000611481 ZNF430Q9H8G1 570 aaPredicted RBP2.74□□□□□ -1.97
LINC00540-201ENST00000611481 DAZ1Q9NQZ3 744 aaKnown RBP2.74□□□□□ -1.97
LINC00540-201ENST00000611481 WASHC3Q9Y3C0 194 aa2.74□□□□□ -1.97
LINC00540-201ENST00000611481 RFNGQ9Y644 331 aa2.74□□□□□ -1.97
LINC00540-201ENST00000611481 IGLV11-55A0A075B6I3 123 aa2.73□□□□□ -1.97
LINC00540-201ENST00000611481 IGKV1-12A0A0C4DH73 117 aa2.73□□□□□ -1.97
LINC00540-201ENST00000611481 TMEM269A0A1B0GVZ9 245 aa2.73□□□□□ -1.97
LINC00540-201ENST00000611481 LRCOL1A6NCL2 159 aa2.73□□□□□ -1.97
LINC00540-201ENST00000611481 OR5H14A6NHG9 310 aa2.73□□□□□ -1.97
LINC00540-201ENST00000611481 ZFP92A6NM28 416 aa2.73□□□□□ -1.97
LINC00540-201ENST00000611481 C9JQL5 133 aa2.73□□□□□ -1.97
LINC00540-201ENST00000611481 TSTD3H0UI37 97 aa2.73□□□□□ -1.97
LINC00540-201ENST00000611481 H0YJW9 148 aa2.73□□□□□ -1.97
LINC00540-201ENST00000611481 DHFRP00374 187 aa2.73□□□□□ -1.97
LINC00540-201ENST00000611481 IGKV1D-12P01611 117 aa2.73□□□□□ -1.97
LINC00540-201ENST00000611481 DEFB130BP0DP73 79 aa2.73□□□□□ -1.97
LINC00540-201ENST00000611481 DEFB130AP0DP74 79 aa2.73□□□□□ -1.97
LINC00540-201ENST00000611481 IDO1P14902 403 aa2.73□□□□□ -1.97
LINC00540-201ENST00000611481 INPP1P49441 399 aa2.73□□□□□ -1.97
LINC00540-201ENST00000611481 UBE2AP49459 152 aa2.73□□□□□ -1.97
LINC00540-201ENST00000611481 RAB2AP61019 212 aa2.73□□□□□ -1.97
LINC00540-201ENST00000611481 FAM24BQ8N5W8 94 aa2.73□□□□□ -1.97
LINC00540-201ENST00000611481 C15orf40Q8WUR7 153 aa2.73□□□□□ -1.97
LINC00540-201ENST00000611481 ENOPH1Q9UHY7 261 aa2.73□□□□□ -1.97
LINC00540-201ENST00000611481 V9GYS6 101 aa2.73□□□□□ -1.97
LINC00540-201ENST00000611481 NEBP20929 6669 aa2.73□□□□□ -1.97
LINC00540-201ENST00000611481 IGHV3-49A0A0A0MS15 119 aa2.72□□□□□ -1.97
LINC00540-201ENST00000611481 TRAV8-1A0A0A6YYK1 113 aa2.72□□□□□ -1.97
LINC00540-201ENST00000611481 TMEM30CPA0ZSE6 113 aa2.72□□□□□ -1.97
LINC00540-201ENST00000611481 ISLRO14498 428 aa2.72□□□□□ -1.97
LINC00540-201ENST00000611481 PSCAO43653 123 aa2.72□□□□□ -1.97
LINC00540-201ENST00000611481 ORC5O43913 435 aa2.72□□□□□ -1.97
LINC00540-201ENST00000611481 IGKV1-16P04430 117 aa2.72□□□□□ -1.97
LINC00540-201ENST00000611481 OR13C7P0DN81 318 aa2.72□□□□□ -1.97
LINC00540-201ENST00000611481 ESDP10768 282 aa2.72□□□□□ -1.97
LINC00540-201ENST00000611481 SPI1P17947 270 aa2.72□□□□□ -1.97
LINC00540-201ENST00000611481 RBP2P50120 134 aa2.72□□□□□ -1.97
LINC00540-201ENST00000611481 SMCO1Q147U7 214 aa2.72□□□□□ -1.97
LINC00540-201ENST00000611481 RPL39P5Q59GN2 51 aa2.72□□□□□ -1.97
LINC00540-201ENST00000611481 GLT8D1Q68CQ7 371 aa2.72□□□□□ -1.97
LINC00540-201ENST00000611481 LPCAT3Q6P1A2 487 aa2.72□□□□□ -1.97
LINC00540-201ENST00000611481 ZNF705AQ6ZN79 300 aaPredicted RBP2.72□□□□□ -1.97
LINC00540-201ENST00000611481 FAM19A3Q7Z5A8 133 aa2.72□□□□□ -1.97
LINC00540-201ENST00000611481 SMIM20Q8N5G0 67 aa2.72□□□□□ -1.97
LINC00540-201ENST00000611481 ZNF555Q8NEP9 628 aa2.72□□□□□ -1.97
LINC00540-201ENST00000611481 OR13C6PQ8NH95 151 aa2.72□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms