RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 FOXE3Q13461 319 aa10.97□□□□□ -0.65
VRK3-217ENST00000599538 PRR9Q5T870 116 aa10.97□□□□□ -0.65
VRK3-217ENST00000599538 Q6AWC8 147 aa10.97□□□□□ -0.65
VRK3-217ENST00000599538 C9orf47Q6ZRZ4 202 aa10.97□□□□□ -0.65
VRK3-217ENST00000599538 Q8N976 141 aa10.97□□□□□ -0.65
VRK3-217ENST00000599538 MSRB1Q9NZV6 116 aa10.97□□□□□ -0.65
VRK3-217ENST00000599538 CUBNO60494 3623 aa10.97□□□□□ -0.65
VRK3-217ENST00000599538 FAM181BA6NEQ2 426 aa10.96□□□□□ -0.65
VRK3-217ENST00000599538 HSBP1O75506 76 aa10.96□□□□□ -0.65
VRK3-217ENST00000599538 PRSS57Q6UWY2 283 aa10.96□□□□□ -0.65
VRK3-217ENST00000599538 FER1L6-AS1Q8NA97 138 aa10.96□□□□□ -0.65
VRK3-217ENST00000599538 GATD1Q8NB37 220 aa10.96□□□□□ -0.65
VRK3-217ENST00000599538 SMPXQ9UHP9 88 aa10.96□□□□□ -0.65
VRK3-217ENST00000599538 J3KRW8 73 aa10.96□□□□□ -0.66
VRK3-217ENST00000599538 AMN1Q8IY45 258 aa10.95□□□□□ -0.66
VRK3-217ENST00000599538 CSN3P07498 182 aa10.94□□□□□ -0.66
VRK3-217ENST00000599538 C3orf79P0CE67 100 aa10.94□□□□□ -0.66
VRK3-217ENST00000599538 CTRLP40313 264 aa10.94□□□□□ -0.66
VRK3-217ENST00000599538 LINC01559Q495D7 138 aa10.94□□□□□ -0.66
VRK3-217ENST00000599538 ZNF493Q6ZR52 646 aa10.94□□□□□ -0.66
VRK3-217ENST00000599538 BORCS7Q96B45 105 aa10.94□□□□□ -0.66
VRK3-217ENST00000599538 NF1P21359 2839 aa10.94□□□□□ -0.66
VRK3-217ENST00000599538 TSTD3H0UI37 97 aa10.94□□□□□ -0.66
VRK3-217ENST00000599538 DDTP30046 118 aa10.94□□□□□ -0.66
VRK3-217ENST00000599538 FAM106AQ4KMX7 169 aa10.94□□□□□ -0.66
VRK3-217ENST00000599538 HIST2H2BDQ6DRA6 164 aa10.94□□□□□ -0.66
VRK3-217ENST00000599538 A0A1B0GW15 77 aa10.93□□□□□ -0.66
VRK3-217ENST00000599538 J3QKU1 62 aa10.93□□□□□ -0.66
VRK3-217ENST00000599538 M0R2Z0 102 aa10.93□□□□□ -0.66
VRK3-217ENST00000599538 RPS20P60866 119 aaKnown RBP10.93□□□□□ -0.66
VRK3-217ENST00000599538 TWIST1Q15672 202 aa10.93□□□□□ -0.66
VRK3-217ENST00000599538 EBLN2Q6P2I7 272 aa10.93□□□□□ -0.66
VRK3-217ENST00000599538 C18orf65Q6ZTR6 163 aa10.93□□□□□ -0.66
VRK3-217ENST00000599538 SORL1Q92673 2214 aa10.93□□□□□ -0.66
VRK3-217ENST00000599538 IGHV4OR15-8A0A075B7B6 117 aa10.93□□□□□ -0.66
VRK3-217ENST00000599538 A0A087WW49 117 aa10.93□□□□□ -0.66
VRK3-217ENST00000599538 K7EMT4 169 aa10.93□□□□□ -0.66
VRK3-217ENST00000599538 SRSF2Q01130 221 aaKnown RBP10.93□□□□□ -0.66
VRK3-217ENST00000599538 KIR3DS1Q14943 382 aa10.93□□□□□ -0.66
VRK3-217ENST00000599538 WFDC3Q8IUB2 231 aa10.93□□□□□ -0.66
VRK3-217ENST00000599538 MYOZ3Q8TDC0 251 aa10.93□□□□□ -0.66
VRK3-217ENST00000599538 CLEC5AQ9NY25 188 aa10.93□□□□□ -0.66
VRK3-217ENST00000599538 TMEM89A2RUT3 159 aa10.92□□□□□ -0.66
VRK3-217ENST00000599538 FAM104BQ5XKR9 115 aa10.92□□□□□ -0.66
VRK3-217ENST00000599538 TEX43Q6ZNM6 134 aa10.92□□□□□ -0.66
VRK3-217ENST00000599538 LINC00173Q6ZV60 143 aa10.92□□□□□ -0.66
VRK3-217ENST00000599538 ZFAND2AQ8N6M9 145 aa10.92□□□□□ -0.66
VRK3-217ENST00000599538 PPP1R14DQ9NXH3 145 aa10.92□□□□□ -0.66
VRK3-217ENST00000599538 IGHV1-24A0A0C4DH33 117 aa10.91□□□□□ -0.66
VRK3-217ENST00000599538 D6R8Y8 96 aa10.91□□□□□ -0.66
VRK3-217ENST00000599538 LINC00614P0C842 121 aa10.91□□□□□ -0.66
VRK3-217ENST00000599538 SYNJ2BPP57105 145 aa10.91□□□□□ -0.66
VRK3-217ENST00000599538 HIST1H1AQ02539 215 aaPredicted RBP10.91□□□□□ -0.66
VRK3-217ENST00000599538 UNC79Q9P2D8 2635 aa10.91□□□□□ -0.66
VRK3-217ENST00000599538 SMKR1H3BMG3 65 aa10.91□□□□□ -0.66
VRK3-217ENST00000599538 DCANP1Q8TF63 244 aa10.91□□□□□ -0.66
VRK3-217ENST00000599538 C2orf70A6NJV1 201 aa10.9□□□□□ -0.66
VRK3-217ENST00000599538 GAS8-AS1O95177 125 aa10.9□□□□□ -0.66
VRK3-217ENST00000599538 ELANEP08246 267 aa10.9□□□□□ -0.66
VRK3-217ENST00000599538 LGALS1P09382 135 aaKnown RBP10.9□□□□□ -0.66
VRK3-217ENST00000599538 DEFB136Q30KP8 78 aa10.9□□□□□ -0.66
VRK3-217ENST00000599538 MRPL51Q4U2R6 128 aaKnown RBP10.9□□□□□ -0.66
VRK3-217ENST00000599538 SPATA12Q7Z6I5 190 aa10.9□□□□□ -0.66
VRK3-217ENST00000599538 OR10J6PQ8NGY7 276 aa10.9□□□□□ -0.66
VRK3-217ENST00000599538 C14orf144Q96I85 54 aa10.9□□□□□ -0.66
VRK3-217ENST00000599538 CNFNQ9BYD5 112 aa10.9□□□□□ -0.66
VRK3-217ENST00000599538 AKAP9Q99996 3911 aa10.9□□□□□ -0.66
VRK3-217ENST00000599538 OVOL1O14753 267 aa10.9□□□□□ -0.67
VRK3-217ENST00000599538 TFPI2P48307 235 aa10.9□□□□□ -0.67
VRK3-217ENST00000599538 OR8A1Q8NGG7 326 aa10.9□□□□□ -0.67
VRK3-217ENST00000599538 LINC00477Q96M19 166 aa10.9□□□□□ -0.67
VRK3-217ENST00000599538 UFC1Q9Y3C8 167 aa10.9□□□□□ -0.67
VRK3-217ENST00000599538 PAM16Q9Y3D7 125 aa10.9□□□□□ -0.67
VRK3-217ENST00000599538 KIR2DL5BA0A0G2JN68 375 aa10.89□□□□□ -0.67
VRK3-217ENST00000599538 KIR2DL5BA0A0G2JPC4 375 aa10.89□□□□□ -0.67
VRK3-217ENST00000599538 SPRY2O43597 315 aa10.89□□□□□ -0.67
VRK3-217ENST00000599538 NCR2O95944 276 aa10.89□□□□□ -0.67
VRK3-217ENST00000599538 KIR2DL5AQ8N109 375 aa10.89□□□□□ -0.67
VRK3-217ENST00000599538 OR10AG1Q8NH19 301 aa10.89□□□□□ -0.67
VRK3-217ENST00000599538 CHCHD1Q96BP2 118 aaKnown RBP10.89□□□□□ -0.67
VRK3-217ENST00000599538 RNF185Q96GF1 192 aa10.89□□□□□ -0.67
VRK3-217ENST00000599538 LOC389332A0A1B0GUA5 103 aa10.88□□□□□ -0.67
VRK3-217ENST00000599538 HOXD3P31249 432 aaPredicted RBP10.88□□□□□ -0.67
VRK3-217ENST00000599538 DEFA6Q01524 100 aa10.88□□□□□ -0.67
VRK3-217ENST00000599538 ATOH7Q8N100 152 aa10.88□□□□□ -0.67
VRK3-217ENST00000599538 Q8N2B8 174 aa10.88□□□□□ -0.67
VRK3-217ENST00000599538 WFDC12Q8WWY7 111 aa10.88□□□□□ -0.67
VRK3-217ENST00000599538 UBE2E2Q96LR5 201 aa10.88□□□□□ -0.67
VRK3-217ENST00000599538 U3KQK5 164 aa10.88□□□□□ -0.67
VRK3-217ENST00000599538 AGRNO00468 2067 aa10.88□□□□□ -0.67
VRK3-217ENST00000599538 IFI27P40305 119 aaPredicted RBP10.88□□□□□ -0.67
VRK3-217ENST00000599538 KRTAP1-1Q07627 177 aa10.88□□□□□ -0.67
VRK3-217ENST00000599538 KLHDC1Q8N7A1 406 aa10.88□□□□□ -0.67
VRK3-217ENST00000599538 RNF152Q8N8N0 203 aa10.88□□□□□ -0.67
VRK3-217ENST00000599538 FAM19A4Q96LR4 140 aa10.88□□□□□ -0.67
VRK3-217ENST00000599538 MS4A6AQ9H2W1 248 aa10.88□□□□□ -0.67
VRK3-217ENST00000599538 LENEPQ9Y5L5 61 aa10.88□□□□□ -0.67
VRK3-217ENST00000599538 MTORP42345 2549 aa10.88□□□□□ -0.67
VRK3-217ENST00000599538 GCN1Q92616 2671 aaKnown RBP10.88□□□□□ -0.67
VRK3-217ENST00000599538 TCTEX1D4Q5JR98 221 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms