RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 VSIG2Q96IQ7 327 aa6.77□□□□□ -1.33
VRK3-216ENST00000599342 KRTAP1-5Q9BYS1 174 aa6.77□□□□□ -1.33
VRK3-216ENST00000599342 MRPL16Q9NX20 251 aaKnown RBP6.77□□□□□ -1.33
VRK3-216ENST00000599342 TP53TG3Q9ULZ0 132 aa6.77□□□□□ -1.33
VRK3-216ENST00000599342 HSPB11Q9Y547 144 aa6.77□□□□□ -1.33
VRK3-216ENST00000599342 PCLOQ9Y6V0 5065 aa6.77□□□□□ -1.33
VRK3-216ENST00000599342 RBAKDNA6NC62 111 aa6.76□□□□□ -1.33
VRK3-216ENST00000599342 CDK2AP2O75956 126 aa6.76□□□□□ -1.33
VRK3-216ENST00000599342 H2BFSP57053 126 aa6.76□□□□□ -1.33
VRK3-216ENST00000599342 DEFA1P59665 94 aa6.76□□□□□ -1.33
VRK3-216ENST00000599342 DEFA3P59666 94 aa6.76□□□□□ -1.33
VRK3-216ENST00000599342 SLAQ13239 276 aa6.76□□□□□ -1.33
VRK3-216ENST00000599342 MUC21Q5SSG8 566 aa6.76□□□□□ -1.33
VRK3-216ENST00000599342 SPATA12Q7Z6I5 190 aa6.76□□□□□ -1.33
VRK3-216ENST00000599342 PRO0255Q9UI72 69 aa6.76□□□□□ -1.33
VRK3-216ENST00000599342 SIVA1O15304 175 aa6.75□□□□□ -1.33
VRK3-216ENST00000599342 MPC2O95563 127 aa6.75□□□□□ -1.33
VRK3-216ENST00000599342 ZNF266Q14584 549 aa6.75□□□□□ -1.33
VRK3-216ENST00000599342 FAM74A1Q5RGS3 127 aa6.75□□□□□ -1.33
VRK3-216ENST00000599342 Q6ZQT7 251 aa6.75□□□□□ -1.33
VRK3-216ENST00000599342 CMTM2Q8TAZ6 248 aa6.75□□□□□ -1.33
VRK3-216ENST00000599342 MARVELD1Q9BSK0 173 aa6.75□□□□□ -1.33
VRK3-216ENST00000599342 SMIM3Q9BZL3 60 aa6.75□□□□□ -1.33
VRK3-216ENST00000599342 PTTG2Q9NZH5 202 aa6.75□□□□□ -1.33
VRK3-216ENST00000599342 TRGV11A0A075B6L2 103 aa6.74□□□□□ -1.33
VRK3-216ENST00000599342 TRGV4A0A0C4DH28 118 aa6.74□□□□□ -1.33
VRK3-216ENST00000599342 A0A1W2PPV4 95 aa6.74□□□□□ -1.33
VRK3-216ENST00000599342 DIRC3C9JPN6 131 aa6.74□□□□□ -1.33
VRK3-216ENST00000599342 NXPH4O95158 308 aa6.74□□□□□ -1.33
VRK3-216ENST00000599342 RPL12P30050 165 aaKnown RBP6.74□□□□□ -1.33
VRK3-216ENST00000599342 LINC00315P59091 139 aa6.74□□□□□ -1.33
VRK3-216ENST00000599342 IFITM3Q01628 133 aa6.74□□□□□ -1.33
VRK3-216ENST00000599342 MRPL23Q16540 153 aaKnown RBP6.74□□□□□ -1.33
VRK3-216ENST00000599342 FAM159AQ6UWV7 190 aa6.74□□□□□ -1.33
VRK3-216ENST00000599342 MAPKAPK5-AS1Q8N8E1 139 aa6.74□□□□□ -1.33
VRK3-216ENST00000599342 PCNPQ8WW12 178 aaKnown RBP6.74□□□□□ -1.33
VRK3-216ENST00000599342 HYLS1Q96M11 299 aa6.74□□□□□ -1.33
VRK3-216ENST00000599342 C8orf49Q96NF6 230 aa6.74□□□□□ -1.33
VRK3-216ENST00000599342 OTORQ9NRC9 128 aa6.74□□□□□ -1.33
VRK3-216ENST00000599342 MBD2Q9UBB5 411 aa6.74□□□□□ -1.33
VRK3-216ENST00000599342 NAGKQ9UJ70 344 aa6.74□□□□□ -1.33
VRK3-216ENST00000599342 RPH3ALQ9UNE2 315 aa6.74□□□□□ -1.33
VRK3-216ENST00000599342 HHLA3Q9XRX5 114 aa6.74□□□□□ -1.33
VRK3-216ENST00000599342 LENEPQ9Y5L5 61 aa6.74□□□□□ -1.33
VRK3-216ENST00000599342 CRYBA4P53673 196 aa6.73□□□□□ -1.33
VRK3-216ENST00000599342 TMEM183BQ1AE95 376 aa6.73□□□□□ -1.33
VRK3-216ENST00000599342 ACOT6Q3I5F7 207 aaPredicted RBP6.73□□□□□ -1.33
VRK3-216ENST00000599342 Q6AWC8 147 aa6.73□□□□□ -1.33
VRK3-216ENST00000599342 NEGR1Q7Z3B1 354 aa6.73□□□□□ -1.33
VRK3-216ENST00000599342 TMEM183AQ8IXX5 376 aa6.73□□□□□ -1.33
VRK3-216ENST00000599342 SPXQ9BT56 116 aa6.73□□□□□ -1.33
VRK3-216ENST00000599342 HSPG2P98160 4391 aa6.72□□□□□ -1.33
VRK3-216ENST00000599342 PGPA6NDG6 321 aa6.72□□□□□ -1.33
VRK3-216ENST00000599342 EREGO14944 169 aa6.72□□□□□ -1.33
VRK3-216ENST00000599342 SFTA3P0C7M3 94 aa6.72□□□□□ -1.33
VRK3-216ENST00000599342 SRIP30626 198 aa6.72□□□□□ -1.33
VRK3-216ENST00000599342 FHL2Q14192 279 aa6.72□□□□□ -1.33
VRK3-216ENST00000599342 PQLC2Q6ZP29 291 aa6.72□□□□□ -1.33
VRK3-216ENST00000599342 TMED6Q8WW62 240 aa6.72□□□□□ -1.33
VRK3-216ENST00000599342 MDFICQ9P1T7 246 aa6.72□□□□□ -1.33
VRK3-216ENST00000599342 RYR1P21817 5038 aa6.72□□□□□ -1.33
VRK3-216ENST00000599342 MUC4Q99102 2169 aa6.71□□□□□ -1.33
VRK3-216ENST00000599342 TRAV9-2A0A087WT02 112 aa6.71□□□□□ -1.34
VRK3-216ENST00000599342 A6NHS1 94 aa6.71□□□□□ -1.34
VRK3-216ENST00000599342 C9JCJ5 164 aa6.71□□□□□ -1.34
VRK3-216ENST00000599342 K7EQD1 137 aa6.71□□□□□ -1.34
VRK3-216ENST00000599342 EIF3GO75821 320 aaKnown RBP eCLIP6.71□□□□□ -1.34
VRK3-216ENST00000599342 ORM1P02763 201 aa6.71□□□□□ -1.34
VRK3-216ENST00000599342 KRTAP10-2P60368 255 aa6.71□□□□□ -1.34
VRK3-216ENST00000599342 ERVFC1-1P60608 527 aa6.71□□□□□ -1.34
VRK3-216ENST00000599342 LYPD5Q6UWN5 251 aa6.71□□□□□ -1.34
VRK3-216ENST00000599342 GOLT1AQ6ZVE7 132 aa6.71□□□□□ -1.34
VRK3-216ENST00000599342 OR10G4Q8NGN3 311 aa6.71□□□□□ -1.34
VRK3-216ENST00000599342 RASL10AQ92737 203 aa6.71□□□□□ -1.34
VRK3-216ENST00000599342 ZNF479Q96JC4 524 aa6.71□□□□□ -1.34
VRK3-216ENST00000599342 KRTAP4-5Q9BYR2 181 aa6.71□□□□□ -1.34
VRK3-216ENST00000599342 LY96Q9Y6Y9 160 aa6.71□□□□□ -1.34
VRK3-216ENST00000599342 LRP1BQ9NZR2 4599 aa6.71□□□□□ -1.34
VRK3-216ENST00000599342 TRAV4A0A0B4J268 109 aa6.7□□□□□ -1.34
VRK3-216ENST00000599342 TRAV21A0A0B4J279 112 aa6.7□□□□□ -1.34
VRK3-216ENST00000599342 F6UZH7 168 aa6.7□□□□□ -1.34
VRK3-216ENST00000599342 M0R2P5 195 aa6.7□□□□□ -1.34
VRK3-216ENST00000599342 GYPEP15421 78 aa6.7□□□□□ -1.34
VRK3-216ENST00000599342 RAB2AP61019 212 aa6.7□□□□□ -1.34
VRK3-216ENST00000599342 TDRG1Q3Y452 100 aa6.7□□□□□ -1.34
VRK3-216ENST00000599342 NFE4Q86UQ8 179 aa6.7□□□□□ -1.34
VRK3-216ENST00000599342 IQCF2Q8IXL9 164 aa6.7□□□□□ -1.34
VRK3-216ENST00000599342 ARL6IP6Q8N6S5 226 aa6.7□□□□□ -1.34
VRK3-216ENST00000599342 OR4C5Q8NGB2 326 aa6.7□□□□□ -1.34
VRK3-216ENST00000599342 OR10G9Q8NGN4 311 aa6.7□□□□□ -1.34
VRK3-216ENST00000599342 OR10G7Q8NGN6 311 aa6.7□□□□□ -1.34
VRK3-216ENST00000599342 TXNDC17Q9BRA2 123 aa6.7□□□□□ -1.34
VRK3-216ENST00000599342 NDFIP1Q9BT67 221 aa6.7□□□□□ -1.34
VRK3-216ENST00000599342 WFDC1Q9HC57 220 aa6.7□□□□□ -1.34
VRK3-216ENST00000599342 SDF2L1Q9HCN8 221 aa6.7□□□□□ -1.34
VRK3-216ENST00000599342 TREM1Q9NP99 234 aa6.7□□□□□ -1.34
VRK3-216ENST00000599342 TRAV8-1A0A0A6YYK1 113 aa6.69□□□□□ -1.34
VRK3-216ENST00000599342 HMGB3O15347 200 aaKnown RBP6.69□□□□□ -1.34
VRK3-216ENST00000599342 EVI2AP22794 236 aa6.69□□□□□ -1.34
VRK3-216ENST00000599342 CDC34P49427 236 aaPredicted RBP6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms