RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 SCGB1C1Q8TD33 95 aa8.61□□□□□ -1.03
TRIM28-212ENST00000597995 C18orf15Q96N68 181 aa8.61□□□□□ -1.03
TRIM28-212ENST00000597995 LINC00467Q9BRT7 94 aa8.61□□□□□ -1.03
TRIM28-212ENST00000597995 ZNF492Q9P255 531 aa8.61□□□□□ -1.03
TRIM28-212ENST00000597995 A0A096LPF7 62 aa8.6□□□□□ -1.03
TRIM28-212ENST00000597995 EPM2AB3EWF7 344 aa8.6□□□□□ -1.03
TRIM28-212ENST00000597995 NMBP08949 121 aa8.6□□□□□ -1.03
TRIM28-212ENST00000597995 Q6ZRN7 208 aaPredicted RBP8.6□□□□□ -1.03
TRIM28-212ENST00000597995 Q6ZTI0 123 aa8.6□□□□□ -1.03
TRIM28-212ENST00000597995 Q8TAT8 98 aa8.6□□□□□ -1.03
TRIM28-212ENST00000597995 VSIG2Q96IQ7 327 aa8.6□□□□□ -1.03
TRIM28-212ENST00000597995 GSN-AS1Q9NRJ2 163 aa8.6□□□□□ -1.03
TRIM28-212ENST00000597995 TP53TG3Q9ULZ0 132 aa8.6□□□□□ -1.03
TRIM28-212ENST00000597995 GPX1P07203 203 aa8.59□□□□□ -1.03
TRIM28-212ENST00000597995 ZNF138P52744 262 aa8.59□□□□□ -1.03
TRIM28-212ENST00000597995 LINC00315P59091 139 aa8.59□□□□□ -1.03
TRIM28-212ENST00000597995 RAB2AP61019 212 aa8.59□□□□□ -1.03
TRIM28-212ENST00000597995 UBE2L3P68036 154 aaKnown RBP8.59□□□□□ -1.03
TRIM28-212ENST00000597995 ANXA2RQ3ZCQ2 193 aa8.59□□□□□ -1.03
TRIM28-212ENST00000597995 TMEM78Q5T7P6 136 aa8.59□□□□□ -1.03
TRIM28-212ENST00000597995 LYPD1Q8N2G4 141 aa8.59□□□□□ -1.03
TRIM28-212ENST00000597995 TMPRSS5Q9H3S3 457 aa8.59□□□□□ -1.03
TRIM28-212ENST00000597995 KLF12Q9Y4X4 402 aa8.59□□□□□ -1.03
TRIM28-212ENST00000597995 HERC1Q15751 4861 aa8.58□□□□□ -1.04
TRIM28-212ENST00000597995 SIVA1O15304 175 aa8.58□□□□□ -1.04
TRIM28-212ENST00000597995 KHDC3LQ587J8 217 aa8.58□□□□□ -1.04
TRIM28-212ENST00000597995 CDPF1Q6NVV7 123 aa8.58□□□□□ -1.04
TRIM28-212ENST00000597995 EIF4E3Q8N5X7 224 aaKnown RBP8.58□□□□□ -1.04
TRIM28-212ENST00000597995 AQP10Q96PS8 301 aa8.58□□□□□ -1.04
TRIM28-212ENST00000597995 MED28Q9H204 178 aa8.58□□□□□ -1.04
TRIM28-212ENST00000597995 TRGV2A0A075B6R0 118 aa8.57□□□□□ -1.04
TRIM28-212ENST00000597995 TRBV7-9A0A0J9YWB2 115 aa8.57□□□□□ -1.04
TRIM28-212ENST00000597995 RBAKDNA6NC62 111 aa8.57□□□□□ -1.04
TRIM28-212ENST00000597995 DIRC3C9JPN6 131 aa8.57□□□□□ -1.04
TRIM28-212ENST00000597995 EREGO14944 169 aa8.57□□□□□ -1.04
TRIM28-212ENST00000597995 HMGB3O15347 200 aaKnown RBP8.57□□□□□ -1.04
TRIM28-212ENST00000597995 TAS2R45P59539 299 aa8.57□□□□□ -1.04
TRIM28-212ENST00000597995 ACOT6Q3I5F7 207 aaPredicted RBP8.57□□□□□ -1.04
TRIM28-212ENST00000597995 ZNF680Q8NEM1 530 aa8.57□□□□□ -1.04
TRIM28-212ENST00000597995 IGHV1OR15-1A0A075B7D0 117 aa8.56□□□□□ -1.04
TRIM28-212ENST00000597995 PGPA6NDG6 321 aa8.56□□□□□ -1.04
TRIM28-212ENST00000597995 SPINK4O60575 86 aa8.56□□□□□ -1.04
TRIM28-212ENST00000597995 TCL1AP56279 114 aa8.56□□□□□ -1.04
TRIM28-212ENST00000597995 HSD17B11Q8NBQ5 300 aa8.56□□□□□ -1.04
TRIM28-212ENST00000597995 OR10G4Q8NGN3 311 aa8.56□□□□□ -1.04
TRIM28-212ENST00000597995 OR10G9Q8NGN4 311 aa8.56□□□□□ -1.04
TRIM28-212ENST00000597995 OR10G7Q8NGN6 311 aa8.56□□□□□ -1.04
TRIM28-212ENST00000597995 G3V3Q6 166 aa8.55□□□□□ -1.04
TRIM28-212ENST00000597995 RGS13O14921 159 aa8.55□□□□□ -1.04
TRIM28-212ENST00000597995 GIPP09681 153 aaPredicted RBP8.55□□□□□ -1.04
TRIM28-212ENST00000597995 INAFM2P0DMQ5 153 aa8.55□□□□□ -1.04
TRIM28-212ENST00000597995 ATP6V0CP27449 155 aa8.55□□□□□ -1.04
TRIM28-212ENST00000597995 CSN1S1P47710 185 aa8.55□□□□□ -1.04
TRIM28-212ENST00000597995 XGP55808 180 aa8.55□□□□□ -1.04
TRIM28-212ENST00000597995 ERVFC1-1P60608 527 aa8.55□□□□□ -1.04
TRIM28-212ENST00000597995 ZNF266Q14584 549 aa8.55□□□□□ -1.04
TRIM28-212ENST00000597995 IBA57Q5T440 356 aaKnown RBP8.55□□□□□ -1.04
TRIM28-212ENST00000597995 PQLC2Q6ZP29 291 aa8.55□□□□□ -1.04
TRIM28-212ENST00000597995 NFE4Q86UQ8 179 aa8.55□□□□□ -1.04
TRIM28-212ENST00000597995 OR2G3Q8NGZ4 309 aa8.55□□□□□ -1.04
TRIM28-212ENST00000597995 TVP23CQ96ET8 276 aa8.55□□□□□ -1.04
TRIM28-212ENST00000597995 HYLS1Q96M11 299 aa8.55□□□□□ -1.04
TRIM28-212ENST00000597995 OTORQ9NRC9 128 aa8.55□□□□□ -1.04
TRIM28-212ENST00000597995 DMBT1Q9UGM3 2413 aaPredicted RBP8.55□□□□□ -1.04
TRIM28-212ENST00000597995 TRGV1A0A0A0MS02 117 aa8.54□□□□□ -1.04
TRIM28-212ENST00000597995 A0A1W2PPV4 95 aa8.54□□□□□ -1.04
TRIM28-212ENST00000597995 RNF222A6NCQ9 220 aa8.54□□□□□ -1.04
TRIM28-212ENST00000597995 NXPH4O95158 308 aa8.54□□□□□ -1.04
TRIM28-212ENST00000597995 STAG3L2P0CL84 134 aa8.54□□□□□ -1.04
TRIM28-212ENST00000597995 STAG3L3P0CL85 134 aa8.54□□□□□ -1.04
TRIM28-212ENST00000597995 ARL14EPLP0DKL9 152 aa8.54□□□□□ -1.04
TRIM28-212ENST00000597995 SLAQ13239 276 aa8.54□□□□□ -1.04
TRIM28-212ENST00000597995 MUC21Q5SSG8 566 aa8.54□□□□□ -1.04
TRIM28-212ENST00000597995 Q6AWC8 147 aa8.54□□□□□ -1.04
TRIM28-212ENST00000597995 SH3BGRL3Q9H299 93 aa8.54□□□□□ -1.04
TRIM28-212ENST00000597995 MDFICQ9P1T7 246 aa8.54□□□□□ -1.04
TRIM28-212ENST00000597995 ICOSQ9Y6W8 199 aa8.54□□□□□ -1.04
TRIM28-212ENST00000597995 TRAV8-1A0A0A6YYK1 113 aa8.53□□□□□ -1.04
TRIM28-212ENST00000597995 PAX4O43316 350 aa8.53□□□□□ -1.04
TRIM28-212ENST00000597995 CDC34P49427 236 aaPredicted RBP8.53□□□□□ -1.04
TRIM28-212ENST00000597995 GNG5P63218 68 aa8.53□□□□□ -1.04
TRIM28-212ENST00000597995 GOLT1AQ6ZVE7 132 aa8.53□□□□□ -1.04
TRIM28-212ENST00000597995 SUN5Q8TC36 379 aa8.53□□□□□ -1.04
TRIM28-212ENST00000597995 TMED6Q8WW62 240 aa8.53□□□□□ -1.04
TRIM28-212ENST00000597995 FRZBQ92765 325 aa8.53□□□□□ -1.04
TRIM28-212ENST00000597995 RAB24Q969Q5 203 aa8.53□□□□□ -1.04
TRIM28-212ENST00000597995 ST6GAL2Q96JF0 529 aa8.53□□□□□ -1.04
TRIM28-212ENST00000597995 PSMG3Q9BT73 122 aaPredicted RBP8.53□□□□□ -1.04
TRIM28-212ENST00000597995 MRPL16Q9NX20 251 aaKnown RBP8.53□□□□□ -1.04
TRIM28-212ENST00000597995 PRO0255Q9UI72 69 aa8.53□□□□□ -1.04
TRIM28-212ENST00000597995 RPH3ALQ9UNE2 315 aa8.53□□□□□ -1.04
TRIM28-212ENST00000597995 LENEPQ9Y5L5 61 aa8.53□□□□□ -1.04
TRIM28-212ENST00000597995 FAT1Q14517 4588 aa8.53□□□□□ -1.04
TRIM28-212ENST00000597995 TRAV9-2A0A087WT02 112 aa8.52□□□□□ -1.05
TRIM28-212ENST00000597995 K7EP13 123 aa8.52□□□□□ -1.05
TRIM28-212ENST00000597995 RPL7L1Q6DKI1 246 aaKnown RBP8.52□□□□□ -1.05
TRIM28-212ENST00000597995 ARL6IP6Q8N6S5 226 aa8.52□□□□□ -1.05
TRIM28-212ENST00000597995 TNFSF18Q9UNG2 199 aa8.52□□□□□ -1.05
TRIM28-212ENST00000597995 A0A087WTM6 91 aa8.51□□□□□ -1.05
TRIM28-212ENST00000597995 IGHV3-53P01767 116 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms