RNA–Protein interactions for RNA: ENST00000589857.1

ZNF540-208, Transcript of zinc finger protein 540, humanhuman

TSL 4

Gene ZNF540, Length 575 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-208ENST00000589857 PET117Q6UWS5 81 aa8.19□□□□□ -1.1
ZNF540-208ENST00000589857 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa8.19□□□□□ -1.1
ZNF540-208ENST00000589857 C12orf54Q6X4T0 127 aa8.19□□□□□ -1.1
ZNF540-208ENST00000589857 SMIM15Q7Z3B0 74 aa8.19□□□□□ -1.1
ZNF540-208ENST00000589857 C8orf49Q96NF6 230 aa8.19□□□□□ -1.1
ZNF540-208ENST00000589857 MAP1LC3CQ9BXW4 147 aa8.19□□□□□ -1.1
ZNF540-208ENST00000589857 TMEM191AQ9H0A3 160 aa8.19□□□□□ -1.1
ZNF540-208ENST00000589857 ABCA1O95477 2261 aa8.19□□□□□ -1.1
ZNF540-208ENST00000589857 IGHV4-30-2A0A087WSY4 118 aa8.18□□□□□ -1.1
ZNF540-208ENST00000589857 TRAV9-2A0A087WT02 112 aa8.18□□□□□ -1.1
ZNF540-208ENST00000589857 TMEM89A2RUT3 159 aa8.18□□□□□ -1.1
ZNF540-208ENST00000589857 ZNF138P52744 262 aa8.18□□□□□ -1.1
ZNF540-208ENST00000589857 LINC01559Q495D7 138 aa8.18□□□□□ -1.1
ZNF540-208ENST00000589857 FAM104BQ5XKR9 115 aa8.18□□□□□ -1.1
ZNF540-208ENST00000589857 LYZL1Q6UWQ5 148 aa8.18□□□□□ -1.1
ZNF540-208ENST00000589857 ORMDL3Q8N138 153 aa8.18□□□□□ -1.1
ZNF540-208ENST00000589857 FAM19A2Q8N3H0 131 aa8.18□□□□□ -1.1
ZNF540-208ENST00000589857 OR10AG1Q8NH19 301 aa8.18□□□□□ -1.1
ZNF540-208ENST00000589857 PRSS3P2Q8NHM4 247 aa8.18□□□□□ -1.1
ZNF540-208ENST00000589857 TPPP3Q9BW30 176 aa8.18□□□□□ -1.1
ZNF540-208ENST00000589857 AP5S1Q9NUS5 200 aa8.18□□□□□ -1.1
ZNF540-208ENST00000589857 ROS1P08922 2347 aa8.17□□□□□ -1.1
ZNF540-208ENST00000589857 CLPSL1A2RUU4 121 aa8.17□□□□□ -1.1
ZNF540-208ENST00000589857 OVOL1O14753 267 aa8.17□□□□□ -1.1
ZNF540-208ENST00000589857 CRXO43186 299 aaPredicted RBP8.17□□□□□ -1.1
ZNF540-208ENST00000589857 ORM1P02763 201 aa8.17□□□□□ -1.1
ZNF540-208ENST00000589857 CRIP1P50238 77 aa8.17□□□□□ -1.1
ZNF540-208ENST00000589857 TMEM219Q86XT9 240 aa8.17□□□□□ -1.1
ZNF540-208ENST00000589857 Q8N976 141 aa8.17□□□□□ -1.1
ZNF540-208ENST00000589857 LINC01356Q8N9X3 169 aa8.17□□□□□ -1.1
ZNF540-208ENST00000589857 U3KQK5 164 aa8.17□□□□□ -1.1
ZNF540-208ENST00000589857 IGHV1-24A0A0C4DH33 117 aa8.16□□□□□ -1.1
ZNF540-208ENST00000589857 H3BUX3 64 aa8.16□□□□□ -1.1
ZNF540-208ENST00000589857 IGLC6P0CF74 106 aa8.16□□□□□ -1.1
ZNF540-208ENST00000589857 IGHV4-31P0DP07 118 aa8.16□□□□□ -1.1
ZNF540-208ENST00000589857 PSMG4Q5JS54 123 aa8.16□□□□□ -1.1
ZNF540-208ENST00000589857 BRD3OSQ6XYD6 125 aa8.16□□□□□ -1.1
ZNF540-208ENST00000589857 C9orf47Q6ZRZ4 202 aa8.16□□□□□ -1.1
ZNF540-208ENST00000589857 C8orf86Q6ZUL3 223 aa8.16□□□□□ -1.1
ZNF540-208ENST00000589857 BCL6BQ8N143 479 aaPredicted RBP8.16□□□□□ -1.1
ZNF540-208ENST00000589857 PIFOQ8TCI5 191 aa8.16□□□□□ -1.1
ZNF540-208ENST00000589857 C16orf92Q96LL3 132 aa8.16□□□□□ -1.1
ZNF540-208ENST00000589857 PRELID3AQ96N28 172 aa8.16□□□□□ -1.1
ZNF540-208ENST00000589857 VGLL1Q99990 258 aa8.16□□□□□ -1.1
ZNF540-208ENST00000589857 CNFNQ9BYD5 112 aa8.16□□□□□ -1.1
ZNF540-208ENST00000589857 ST20Q9HBF5 79 aa8.16□□□□□ -1.1
ZNF540-208ENST00000589857 IGHV3OR16-10A0A075B7F0 116 aa8.15□□□□□ -1.1
ZNF540-208ENST00000589857 TRBV7-9A0A0J9YWB2 115 aa8.15□□□□□ -1.1
ZNF540-208ENST00000589857 C2orf70A6NJV1 201 aa8.15□□□□□ -1.1
ZNF540-208ENST00000589857 SYS1-DBNDD2H3BUS1 97 aa8.15□□□□□ -1.1
ZNF540-208ENST00000589857 CD33P20138 364 aa8.15□□□□□ -1.1
ZNF540-208ENST00000589857 HNRNPA3P51991 378 aaKnown RBP8.15□□□□□ -1.1
ZNF540-208ENST00000589857 CACNG7P62955 275 aa8.15□□□□□ -1.1
ZNF540-208ENST00000589857 TWIST1Q15672 202 aa8.15□□□□□ -1.1
ZNF540-208ENST00000589857 OR10J6PQ8NGY7 276 aa8.15□□□□□ -1.1
ZNF540-208ENST00000589857 GLMPQ8WWB7 406 aa8.15□□□□□ -1.1
ZNF540-208ENST00000589857 LINC00477Q96M19 166 aa8.15□□□□□ -1.1
ZNF540-208ENST00000589857 TMSB15BA0A087X1C1 80 aa8.14□□□□□ -1.11
ZNF540-208ENST00000589857 IGHV3-35A0A0C4DH35 117 aa8.14□□□□□ -1.11
ZNF540-208ENST00000589857 TGFAP01135 160 aa8.14□□□□□ -1.11
ZNF540-208ENST00000589857 IGHG4P01861 327 aa8.14□□□□□ -1.11
ZNF540-208ENST00000589857 RPLP1P05386 114 aaKnown RBP8.14□□□□□ -1.11
ZNF540-208ENST00000589857 IGLC3P0DOY3 106 aa8.14□□□□□ -1.11
ZNF540-208ENST00000589857 IGHV4-38-2P0DP08 117 aa8.14□□□□□ -1.11
ZNF540-208ENST00000589857 FAM106AQ4KMX7 169 aa8.14□□□□□ -1.11
ZNF540-208ENST00000589857 EBLN2Q6P2I7 272 aa8.14□□□□□ -1.11
ZNF540-208ENST00000589857 SPATA12Q7Z6I5 190 aa8.14□□□□□ -1.11
ZNF540-208ENST00000589857 TEX29Q8N6K0 151 aa8.14□□□□□ -1.11
ZNF540-208ENST00000589857 Q8TAT8 98 aa8.14□□□□□ -1.11
ZNF540-208ENST00000589857 NPFFR1Q9GZQ6 430 aa8.14□□□□□ -1.11
ZNF540-208ENST00000589857 MS4A6AQ9H2W1 248 aa8.14□□□□□ -1.11
ZNF540-208ENST00000589857 A0A096LNT2 108 aa8.13□□□□□ -1.11
ZNF540-208ENST00000589857 OR4C46A6NHA9 309 aa8.13□□□□□ -1.11
ZNF540-208ENST00000589857 LINC01548A6NM66 108 aa8.13□□□□□ -1.11
ZNF540-208ENST00000589857 D6R8Y8 96 aa8.13□□□□□ -1.11
ZNF540-208ENST00000589857 K7EMT4 169 aa8.13□□□□□ -1.11
ZNF540-208ENST00000589857 PF4V1P10720 104 aa8.13□□□□□ -1.11
ZNF540-208ENST00000589857 PPIFP30405 207 aaKnown RBP8.13□□□□□ -1.11
ZNF540-208ENST00000589857 CKS2P33552 79 aa8.13□□□□□ -1.11
ZNF540-208ENST00000589857 ID1P41134 155 aa8.13□□□□□ -1.11
ZNF540-208ENST00000589857 NUTF2P61970 127 aaKnown RBP8.13□□□□□ -1.11
ZNF540-208ENST00000589857 LY6EQ16553 131 aa8.13□□□□□ -1.11
ZNF540-208ENST00000589857 COL5A1-AS1Q5SY13 56 aa8.13□□□□□ -1.11
ZNF540-208ENST00000589857 Q6ZN92 141 aa8.13□□□□□ -1.11
ZNF540-208ENST00000589857 LINC00469Q8N7U9 141 aa8.13□□□□□ -1.11
ZNF540-208ENST00000589857 ZNF738Q8NE65 137 aa8.13□□□□□ -1.11
ZNF540-208ENST00000589857 URB1-AS1Q96HZ7 61 aa8.13□□□□□ -1.11
ZNF540-208ENST00000589857 PMCHL2Q9BQD1 86 aa8.13□□□□□ -1.11
ZNF540-208ENST00000589857 SNHG12Q9BXW3 62 aa8.13□□□□□ -1.11
ZNF540-208ENST00000589857 MAP1LC3AQ9H492 121 aa8.13□□□□□ -1.11
ZNF540-208ENST00000589857 NXT2Q9NPJ8 142 aaKnown RBP8.13□□□□□ -1.11
ZNF540-208ENST00000589857 MRPS16Q9Y3D3 137 aaKnown RBP8.13□□□□□ -1.11
ZNF540-208ENST00000589857 RNF114Q9Y508 228 aa8.13□□□□□ -1.11
ZNF540-208ENST00000589857 TRAV8-2A0A0B4J237 113 aa8.12□□□□□ -1.11
ZNF540-208ENST00000589857 A0A1B0GV90 55 aa8.12□□□□□ -1.11
ZNF540-208ENST00000589857 WIPF1O43516 503 aa8.12□□□□□ -1.11
ZNF540-208ENST00000589857 IGLV1-40P01703 118 aa8.12□□□□□ -1.11
ZNF540-208ENST00000589857 FOXE3Q13461 319 aa8.12□□□□□ -1.11
ZNF540-208ENST00000589857 MRPL51Q4U2R6 128 aaKnown RBP8.12□□□□□ -1.11
ZNF540-208ENST00000589857 C3orf56Q8N813 242 aa8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 75 ms