RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 FAM107AO95990 144 aa0.48□□□□□ -2.33
SMCHD1-204ENST00000581226 SAMD13Q5VXD3 122 aa0.48□□□□□ -2.33
SMCHD1-204ENST00000581226 C5orf17Q8NAS9 161 aa0.48□□□□□ -2.33
SMCHD1-204ENST00000581226 OR5AK2Q8NH90 309 aa0.48□□□□□ -2.33
SMCHD1-204ENST00000581226 CIB3Q96Q77 187 aaPredicted RBP0.48□□□□□ -2.33
SMCHD1-204ENST00000581226 SELENOSQ9BQE4 189 aa0.48□□□□□ -2.33
SMCHD1-204ENST00000581226 LXNQ9BS40 222 aa0.48□□□□□ -2.33
SMCHD1-204ENST00000581226 MPC1Q9Y5U8 109 aa0.48□□□□□ -2.33
SMCHD1-204ENST00000581226 PLXNA2O75051 1894 aa0.48□□□□□ -2.33
SMCHD1-204ENST00000581226 ESPL1Q14674 2120 aa0.47□□□□□ -2.33
SMCHD1-204ENST00000581226 BDP1A6H8Y1 2624 aa0.47□□□□□ -2.33
SMCHD1-204ENST00000581226 ABCA1O95477 2261 aa0.47□□□□□ -2.33
SMCHD1-204ENST00000581226 TRBV30A0A0K0K1B3 111 aa0.47□□□□□ -2.33
SMCHD1-204ENST00000581226 C5orf58C9J3I9 102 aa0.47□□□□□ -2.33
SMCHD1-204ENST00000581226 RPL22P35268 128 aaKnown RBP0.47□□□□□ -2.33
SMCHD1-204ENST00000581226 BLCAPP62952 87 aa0.47□□□□□ -2.33
SMCHD1-204ENST00000581226 SMIM15Q7Z3B0 74 aa0.47□□□□□ -2.33
SMCHD1-204ENST00000581226 ATOH7Q8N100 152 aa0.47□□□□□ -2.33
SMCHD1-204ENST00000581226 BRK1Q8WUW1 75 aa0.47□□□□□ -2.33
SMCHD1-204ENST00000581226 PLAC4Q8WY50 150 aa0.47□□□□□ -2.33
SMCHD1-204ENST00000581226 VIRMAQ69YN4 1812 aaKnown RBP0.47□□□□□ -2.33
SMCHD1-204ENST00000581226 ABCA4P78363 2273 aa0.47□□□□□ -2.33
SMCHD1-204ENST00000581226 LOC107984156A0A0G2JMH3 177 aa0.46□□□□□ -2.34
SMCHD1-204ENST00000581226 NBDYA0A0U1RRE5 68 aa0.46□□□□□ -2.34
SMCHD1-204ENST00000581226 KRTAP2-3P0C7H8 128 aa0.46□□□□□ -2.34
SMCHD1-204ENST00000581226 Q6ZQY7 126 aa0.46□□□□□ -2.34
SMCHD1-204ENST00000581226 ARL17AQ8IVW1 177 aa0.46□□□□□ -2.34
SMCHD1-204ENST00000581226 TMEM229BQ8NBD8 167 aa0.46□□□□□ -2.34
SMCHD1-204ENST00000581226 KRTAP2-4Q9BYR9 128 aa0.46□□□□□ -2.34
SMCHD1-204ENST00000581226 KRTAP2-1Q9BYU5 128 aa0.46□□□□□ -2.34
SMCHD1-204ENST00000581226 LRP5O75197 1615 aa0.46□□□□□ -2.34
SMCHD1-204ENST00000581226 BCORL1Q5H9F3 1711 aa0.45□□□□□ -2.34
SMCHD1-204ENST00000581226 PHGR1C9JFL3 82 aa0.45□□□□□ -2.34
SMCHD1-204ENST00000581226 HBDP02042 147 aa0.45□□□□□ -2.34
SMCHD1-204ENST00000581226 SLC25A5P05141 298 aaKnown RBP0.45□□□□□ -2.34
SMCHD1-204ENST00000581226 RPS28P62857 69 aaKnown RBP0.45□□□□□ -2.34
SMCHD1-204ENST00000581226 QRFPP83859 136 aa0.45□□□□□ -2.34
SMCHD1-204ENST00000581226 Q86TA4 180 aa0.45□□□□□ -2.34
SMCHD1-204ENST00000581226 C10orf111Q8N326 155 aa0.45□□□□□ -2.34
SMCHD1-204ENST00000581226 SREK1IP1Q8N9Q2 155 aaPredicted RBP0.45□□□□□ -2.34
SMCHD1-204ENST00000581226 OR5A2Q8NGI9 324 aa0.45□□□□□ -2.34
SMCHD1-204ENST00000581226 COMMD3Q9UBI1 195 aa0.45□□□□□ -2.34
SMCHD1-204ENST00000581226 BOKQ9UMX3 212 aaPredicted RBP0.45□□□□□ -2.34
SMCHD1-204ENST00000581226 MED23Q9ULK4 1368 aa0.45□□□□□ -2.34
SMCHD1-204ENST00000581226 DSPPQ9NZW4 1301 aa0.44□□□□□ -2.34
SMCHD1-204ENST00000581226 MUC5ACP98088 5654 aa0.44□□□□□ -2.34
SMCHD1-204ENST00000581226 TRAV16A0A0A6YYK6 109 aaPredicted RBP0.44□□□□□ -2.34
SMCHD1-204ENST00000581226 LOC107986453A0A1B0GWG9 222 aa0.44□□□□□ -2.34
SMCHD1-204ENST00000581226 GNG14A0A1W2PPG7 69 aa0.44□□□□□ -2.34
SMCHD1-204ENST00000581226 CDC42EP2O14613 210 aa0.44□□□□□ -2.34
SMCHD1-204ENST00000581226 PFDN1O60925 122 aa0.44□□□□□ -2.34
SMCHD1-204ENST00000581226 PRH1P02810 166 aa0.44□□□□□ -2.34
SMCHD1-204ENST00000581226 S100GP29377 79 aa0.44□□□□□ -2.34
SMCHD1-204ENST00000581226 SPINK9Q5DT21 86 aa0.44□□□□□ -2.34
SMCHD1-204ENST00000581226 DEFB132Q7Z7B7 95 aa0.44□□□□□ -2.34
SMCHD1-204ENST00000581226 TCTEX1D1Q8N7M0 179 aa0.44□□□□□ -2.34
SMCHD1-204ENST00000581226 GINS2Q9Y248 185 aa0.44□□□□□ -2.34
SMCHD1-204ENST00000581226 DLEC1Q9Y238 1755 aa0.44□□□□□ -2.34
SMCHD1-204ENST00000581226 KDM5CP41229 1560 aa0.44□□□□□ -2.34
SMCHD1-204ENST00000581226 UNC13AQ9UPW8 1703 aa0.44□□□□□ -2.34
SMCHD1-204ENST00000581226 A0A1W2PPB8 328 aa0.43□□□□□ -2.34
SMCHD1-204ENST00000581226 A0A1W2PRS3 328 aa0.43□□□□□ -2.34
SMCHD1-204ENST00000581226 KIR3DP1A8MWS1 328 aa0.43□□□□□ -2.34
SMCHD1-204ENST00000581226 TCRAP04437 139 aa0.43□□□□□ -2.34
SMCHD1-204ENST00000581226 SDC4P31431 198 aa0.43□□□□□ -2.34
SMCHD1-204ENST00000581226 SRP9P49458 86 aaKnown RBP0.43□□□□□ -2.34
SMCHD1-204ENST00000581226 TAC4Q86UU9 113 aa0.43□□□□□ -2.34
SMCHD1-204ENST00000581226 TMEM35BQ8NCS4 154 aa0.43□□□□□ -2.34
SMCHD1-204ENST00000581226 LINC00208Q96KT6 92 aa0.43□□□□□ -2.34
SMCHD1-204ENST00000581226 MRPL40Q9NQ50 206 aaKnown RBP0.43□□□□□ -2.34
SMCHD1-204ENST00000581226 MED13LQ71F56 2210 aa0.43□□□□□ -2.34
SMCHD1-204ENST00000581226 OVOS2A0A0G2JMS6 1433 aa0.43□□□□□ -2.34
SMCHD1-204ENST00000581226 CASZ1Q86V15 1759 aa0.42□□□□□ -2.34
SMCHD1-204ENST00000581226 NAV2Q8IVL1 2488 aa0.42□□□□□ -2.34
SMCHD1-204ENST00000581226 PTPRGP23470 1445 aa0.42□□□□□ -2.34
SMCHD1-204ENST00000581226 ARHGAP31Q2M1Z3 1444 aa0.42□□□□□ -2.34
SMCHD1-204ENST00000581226 A0A1B0GW64 132 aa0.42□□□□□ -2.34
SMCHD1-204ENST00000581226 J3KT08 172 aa0.42□□□□□ -2.34
SMCHD1-204ENST00000581226 UQCRQO14949 82 aa0.42□□□□□ -2.34
SMCHD1-204ENST00000581226 OR8B8Q15620 311 aa0.42□□□□□ -2.34
SMCHD1-204ENST00000581226 CCSMST1Q4G0I0 132 aa0.42□□□□□ -2.34
SMCHD1-204ENST00000581226 OTOSQ8NHW6 89 aa0.42□□□□□ -2.34
SMCHD1-204ENST00000581226 FAM103A1Q9BTL3 118 aaKnown RBP0.42□□□□□ -2.34
SMCHD1-204ENST00000581226 MAP2P11137 1827 aaKnown RBP0.42□□□□□ -2.34
SMCHD1-204ENST00000581226 CACNA1EQ15878 2313 aa0.42□□□□□ -2.34
SMCHD1-204ENST00000581226 TRAV36DV7A0A075B6V5 113 aa0.41□□□□□ -2.34
SMCHD1-204ENST00000581226 LOC101927531A0A1B0GV80 90 aa0.41□□□□□ -2.34
SMCHD1-204ENST00000581226 A0A1B0GX51 115 aa0.41□□□□□ -2.34
SMCHD1-204ENST00000581226 ARL5CA6NH57 179 aa0.41□□□□□ -2.34
SMCHD1-204ENST00000581226 TSTD3H0UI37 97 aa0.41□□□□□ -2.34
SMCHD1-204ENST00000581226 EDF1O60869 148 aaKnown RBP0.41□□□□□ -2.34
SMCHD1-204ENST00000581226 LY6G6CO95867 125 aa0.41□□□□□ -2.34
SMCHD1-204ENST00000581226 IGKCP01834 107 aa0.41□□□□□ -2.34
SMCHD1-204ENST00000581226 MT-ND4LP03901 98 aa0.41□□□□□ -2.34
SMCHD1-204ENST00000581226 GYPBP06028 91 aa0.41□□□□□ -2.34
SMCHD1-204ENST00000581226 SPINT3P49223 89 aa0.41□□□□□ -2.34
SMCHD1-204ENST00000581226 GTF2A1P52655 376 aaPredicted RBP0.41□□□□□ -2.34
SMCHD1-204ENST00000581226 DNAJB13P59910 316 aa0.41□□□□□ -2.34
SMCHD1-204ENST00000581226 FXYD3Q14802 87 aa0.41□□□□□ -2.34
SMCHD1-204ENST00000581226 GLYATL3Q5SZD4 288 aa0.41□□□□□ -2.34
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms