RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 X6R8D5 127 aa6.21□□□□□ -1.42
NUP88-211ENST00000575976 TRAV12-3A0A0B4J271 114 aa6.2□□□□□ -1.42
NUP88-211ENST00000575976 C7orf71A4D174 169 aa6.2□□□□□ -1.42
NUP88-211ENST00000575976 FBLL1A6NHQ2 334 aaKnown RBP6.2□□□□□ -1.42
NUP88-211ENST00000575976 PRM2P04554 102 aa6.2□□□□□ -1.42
NUP88-211ENST00000575976 GPX1P07203 203 aa6.2□□□□□ -1.42
NUP88-211ENST00000575976 RNASE4P34096 147 aaKnown RBP6.2□□□□□ -1.42
NUP88-211ENST00000575976 TAGLN2P37802 199 aaKnown RBP6.2□□□□□ -1.42
NUP88-211ENST00000575976 TMEM183BQ1AE95 376 aa6.2□□□□□ -1.42
NUP88-211ENST00000575976 TOR2AQ5JU69 321 aa6.2□□□□□ -1.42
NUP88-211ENST00000575976 ZNF506Q5JVG8 444 aa6.2□□□□□ -1.42
NUP88-211ENST00000575976 Q6ZQT7 251 aa6.2□□□□□ -1.42
NUP88-211ENST00000575976 ZNF767PQ75MW2 155 aa6.2□□□□□ -1.42
NUP88-211ENST00000575976 C11orf52Q96A22 123 aa6.2□□□□□ -1.42
NUP88-211ENST00000575976 C8orf49Q96NF6 230 aa6.2□□□□□ -1.42
NUP88-211ENST00000575976 TREM1Q9NP99 234 aa6.2□□□□□ -1.42
NUP88-211ENST00000575976 KLF12Q9Y4X4 402 aa6.2□□□□□ -1.42
NUP88-211ENST00000575976 U3KQK5 164 aa6.2□□□□□ -1.42
NUP88-211ENST00000575976 TRBV6-1A0A0K0K1D8 114 aa6.19□□□□□ -1.42
NUP88-211ENST00000575976 ZNF705GA8MUZ8 300 aaPredicted RBP6.19□□□□□ -1.42
NUP88-211ENST00000575976 PDE6DO43924 150 aa6.19□□□□□ -1.42
NUP88-211ENST00000575976 ZNF324O75467 553 aaPredicted RBP6.19□□□□□ -1.42
NUP88-211ENST00000575976 RAB14P61106 215 aa6.19□□□□□ -1.42
NUP88-211ENST00000575976 UBE2G1P62253 170 aa6.19□□□□□ -1.42
NUP88-211ENST00000575976 Q86TA4 180 aa6.19□□□□□ -1.42
NUP88-211ENST00000575976 FMC1Q96HJ9 113 aa6.19□□□□□ -1.42
NUP88-211ENST00000575976 LINC01587Q99440 93 aa6.19□□□□□ -1.42
NUP88-211ENST00000575976 NEU1Q99519 415 aa6.19□□□□□ -1.42
NUP88-211ENST00000575976 C20orf144Q9BQM9 153 aa6.19□□□□□ -1.42
NUP88-211ENST00000575976 NDFIP1Q9BT67 221 aa6.19□□□□□ -1.42
NUP88-211ENST00000575976 TMEM208Q9BTX3 173 aa6.19□□□□□ -1.42
NUP88-211ENST00000575976 EIF5A2Q9GZV4 153 aaKnown RBP6.19□□□□□ -1.42
NUP88-211ENST00000575976 MED9Q9NWA0 146 aa6.19□□□□□ -1.42
NUP88-211ENST00000575976 IGHV4-28A0A0C4DH34 117 aa6.18□□□□□ -1.42
NUP88-211ENST00000575976 H7BYZ3 331 aa6.18□□□□□ -1.42
NUP88-211ENST00000575976 DEFB4AO15263 64 aa6.18□□□□□ -1.42
NUP88-211ENST00000575976 S100A9P06702 114 aaKnown RBP6.18□□□□□ -1.42
NUP88-211ENST00000575976 MIFP14174 115 aa6.18□□□□□ -1.42
NUP88-211ENST00000575976 RPL35P42766 123 aaKnown RBP6.18□□□□□ -1.42
NUP88-211ENST00000575976 ZNF80P51504 273 aaPredicted RBP6.18□□□□□ -1.42
NUP88-211ENST00000575976 CLLU1Q5K131 121 aa6.18□□□□□ -1.42
NUP88-211ENST00000575976 SAPCD1Q5SSQ6 148 aa6.18□□□□□ -1.42
NUP88-211ENST00000575976 TMEM256Q8N2U0 113 aa6.18□□□□□ -1.42
NUP88-211ENST00000575976 Q8NAQ8 132 aa6.18□□□□□ -1.42
NUP88-211ENST00000575976 NIPSNAP3BQ9BS92 247 aa6.18□□□□□ -1.42
NUP88-211ENST00000575976 DERL1Q9BUN8 251 aa6.18□□□□□ -1.42
NUP88-211ENST00000575976 ZFP30Q9Y2G7 519 aa6.18□□□□□ -1.42
NUP88-211ENST00000575976 HUWE1Q7Z6Z7 4374 aaKnown RBP6.18□□□□□ -1.42
NUP88-211ENST00000575976 A0A0J9YWU9 116 aa6.17□□□□□ -1.42
NUP88-211ENST00000575976 RAB19A4D1S5 217 aa6.17□□□□□ -1.42
NUP88-211ENST00000575976 SMIM9A6NGZ8 99 aa6.17□□□□□ -1.42
NUP88-211ENST00000575976 LCE2BO14633 110 aa6.17□□□□□ -1.42
NUP88-211ENST00000575976 GCGP01275 180 aa6.17□□□□□ -1.42
NUP88-211ENST00000575976 LTAP01374 205 aa6.17□□□□□ -1.42
NUP88-211ENST00000575976 SRP19P09132 144 aaKnown RBP6.17□□□□□ -1.42
NUP88-211ENST00000575976 HTN1P15515 57 aa6.17□□□□□ -1.42
NUP88-211ENST00000575976 AZU1P20160 251 aa6.17□□□□□ -1.42
NUP88-211ENST00000575976 CRIP1P50238 77 aa6.17□□□□□ -1.42
NUP88-211ENST00000575976 TAS2R60P59551 318 aa6.17□□□□□ -1.42
NUP88-211ENST00000575976 SRSF3P84103 164 aaKnown RBP6.17□□□□□ -1.42
NUP88-211ENST00000575976 RRN3P1Q2M238 152 aa6.17□□□□□ -1.42
NUP88-211ENST00000575976 SMUG1Q53HV7 270 aa6.17□□□□□ -1.42
NUP88-211ENST00000575976 MUC21Q5SSG8 566 aa6.17□□□□□ -1.42
NUP88-211ENST00000575976 Q6AWC8 147 aa6.17□□□□□ -1.42
NUP88-211ENST00000575976 BAGE2Q86Y30 109 aa6.17□□□□□ -1.42
NUP88-211ENST00000575976 NHLRC2Q8NBF2 726 aa6.17□□□□□ -1.42
NUP88-211ENST00000575976 PYGO2Q9BRQ0 406 aa6.17□□□□□ -1.42
NUP88-211ENST00000575976 IGHV1OR15-1A0A075B7D0 117 aa6.16□□□□□ -1.42
NUP88-211ENST00000575976 TRAV21A0A0B4J279 112 aa6.16□□□□□ -1.42
NUP88-211ENST00000575976 C9JQL5 133 aa6.16□□□□□ -1.42
NUP88-211ENST00000575976 TMEM250H0YL14 139 aa6.16□□□□□ -1.42
NUP88-211ENST00000575976 CENPWQ5EE01 88 aa6.16□□□□□ -1.42
NUP88-211ENST00000575976 COX8CQ7Z4L0 72 aa6.16□□□□□ -1.42
NUP88-211ENST00000575976 TMEM183AQ8IXX5 376 aa6.16□□□□□ -1.42
NUP88-211ENST00000575976 ZC2HC1AQ96GY0 325 aa6.16□□□□□ -1.42
NUP88-211ENST00000575976 MLST8Q9BVC4 326 aa6.16□□□□□ -1.42
NUP88-211ENST00000575976 EDA2RQ9HAV5 297 aa6.16□□□□□ -1.42
NUP88-211ENST00000575976 TRBV20OR9-2A0A075B6H5 130 aa6.15□□□□□ -1.42
NUP88-211ENST00000575976 FABP5P3A8MUU1 101 aa6.15□□□□□ -1.42
NUP88-211ENST00000575976 C3orf84H3BNL1 204 aa6.15□□□□□ -1.42
NUP88-211ENST00000575976 RGS13O14921 159 aa6.15□□□□□ -1.42
NUP88-211ENST00000575976 NDUFS6O75380 124 aaKnown RBP6.15□□□□□ -1.42
NUP88-211ENST00000575976 IGLV2-8P01709 118 aa6.15□□□□□ -1.42
NUP88-211ENST00000575976 PFN1P07737 140 aaKnown RBP6.15□□□□□ -1.42
NUP88-211ENST00000575976 CEBPGP53567 150 aa6.15□□□□□ -1.42
NUP88-211ENST00000575976 EMP1P54849 157 aa6.15□□□□□ -1.42
NUP88-211ENST00000575976 PEA15Q15121 130 aa6.15□□□□□ -1.42
NUP88-211ENST00000575976 ZNF674Q2M3X9 581 aa6.15□□□□□ -1.42
NUP88-211ENST00000575976 ANXA2RQ3ZCQ2 193 aa6.15□□□□□ -1.42
NUP88-211ENST00000575976 EIF4E3Q8N5X7 224 aaKnown RBP6.15□□□□□ -1.42
NUP88-211ENST00000575976 RNASE8Q8TDE3 154 aaKnown RBP6.15□□□□□ -1.42
NUP88-211ENST00000575976 LINC00467Q9BRT7 94 aa6.15□□□□□ -1.42
NUP88-211ENST00000575976 PARLQ9H300 379 aa6.15□□□□□ -1.42
NUP88-211ENST00000575976 C11orf21Q9P2W6 132 aa6.15□□□□□ -1.42
NUP88-211ENST00000575976 NAGKQ9UJ70 344 aa6.15□□□□□ -1.42
NUP88-211ENST00000575976 TP53TG3Q9ULZ0 132 aa6.15□□□□□ -1.42
NUP88-211ENST00000575976 COL7A1Q02388 2944 aa6.15□□□□□ -1.43
NUP88-211ENST00000575976 PLAC8L1A1L4L8 177 aa6.14□□□□□ -1.43
NUP88-211ENST00000575976 PGPEP1LA6NFU8 196 aa6.14□□□□□ -1.43
NUP88-211ENST00000575976 CBY3A6NI87 242 aa6.14□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms