RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 SDIM1Q6ZPB5 146 aa2.46□□□□□ -2.02
VPS35-208ENST00000568612 SMIM29Q86T20 159 aa2.46□□□□□ -2.02
VPS35-208ENST00000568612 TMEM190Q8WZ59 177 aa2.46□□□□□ -2.02
VPS35-208ENST00000568612 CNRIP1Q96F85 164 aaPredicted RBP2.46□□□□□ -2.02
VPS35-208ENST00000568612 ZNF799Q96GE5 643 aa2.46□□□□□ -2.02
VPS35-208ENST00000568612 ARHGAP5-AS1Q96IT6 56 aa2.46□□□□□ -2.02
VPS35-208ENST00000568612 C1orf147Q96MC9 270 aaPredicted RBP2.46□□□□□ -2.02
VPS35-208ENST00000568612 C17orf77Q96MU5 243 aa2.46□□□□□ -2.02
VPS35-208ENST00000568612 S1PR3Q99500 378 aa2.46□□□□□ -2.02
VPS35-208ENST00000568612 HIST1H4GQ99525 98 aa2.46□□□□□ -2.02
VPS35-208ENST00000568612 NPCDR1Q9BY65 106 aa2.46□□□□□ -2.02
VPS35-208ENST00000568612 HES7Q9BYE0 225 aa2.46□□□□□ -2.02
VPS35-208ENST00000568612 CALYQ9NYX4 217 aa2.46□□□□□ -2.02
VPS35-208ENST00000568612 RBM12B-AS1Q9P1G2 102 aa2.46□□□□□ -2.02
VPS35-208ENST00000568612 SMCHD1A6NHR9 2005 aa2.46□□□□□ -2.02
VPS35-208ENST00000568612 PCNX3Q9H6A9 2034 aa2.46□□□□□ -2.02
VPS35-208ENST00000568612 C2orf16Q68DN1 1984 aa2.45□□□□□ -2.02
VPS35-208ENST00000568612 A0A096LNJ9 63 aa2.45□□□□□ -2.02
VPS35-208ENST00000568612 IGKV2D-26A0A0A0MRZ7 120 aa2.45□□□□□ -2.02
VPS35-208ENST00000568612 A0A0D9SEW6 157 aa2.45□□□□□ -2.02
VPS35-208ENST00000568612 LOC107984156A0A0G2JMH3 177 aa2.45□□□□□ -2.02
VPS35-208ENST00000568612 LINC01549A6NIU2 74 aa2.45□□□□□ -2.02
VPS35-208ENST00000568612 H3BP45 60 aa2.45□□□□□ -2.02
VPS35-208ENST00000568612 CCL21O00585 134 aa2.45□□□□□ -2.02
VPS35-208ENST00000568612 PEX7O00628 323 aa2.45□□□□□ -2.02
VPS35-208ENST00000568612 SRSF10O75494 262 aaKnown RBP2.45□□□□□ -2.02
VPS35-208ENST00000568612 IGLV2-8P01709 118 aa2.45□□□□□ -2.02
VPS35-208ENST00000568612 HBDP02042 147 aa2.45□□□□□ -2.02
VPS35-208ENST00000568612 SAA4P35542 130 aa2.45□□□□□ -2.02
VPS35-208ENST00000568612 SYNJ2BPP57105 145 aa2.45□□□□□ -2.02
VPS35-208ENST00000568612 SNRPD3P62318 126 aaKnown RBP2.45□□□□□ -2.02
VPS35-208ENST00000568612 ADIGQ0VDE8 80 aa2.45□□□□□ -2.02
VPS35-208ENST00000568612 FXYD3Q14802 87 aa2.45□□□□□ -2.02
VPS35-208ENST00000568612 ATXN8Q156A1 80 aa2.45□□□□□ -2.02
VPS35-208ENST00000568612 KRTAP24-1Q3LI83 254 aa2.45□□□□□ -2.02
VPS35-208ENST00000568612 ORMDL2Q53FV1 153 aa2.45□□□□□ -2.02
VPS35-208ENST00000568612 Q6ZR03 302 aa2.45□□□□□ -2.02
VPS35-208ENST00000568612 LINC00305Q7Z4B0 112 aa2.45□□□□□ -2.02
VPS35-208ENST00000568612 KTN1-AS1Q86SY8 53 aa2.45□□□□□ -2.02
VPS35-208ENST00000568612 ARL17AQ8IVW1 177 aa2.45□□□□□ -2.02
VPS35-208ENST00000568612 CD177Q8N6Q3 437 aa2.45□□□□□ -2.02
VPS35-208ENST00000568612 OR8A1Q8NGG7 326 aa2.45□□□□□ -2.02
VPS35-208ENST00000568612 CYYR1Q96J86 154 aa2.45□□□□□ -2.02
VPS35-208ENST00000568612 METTL26Q96S19 204 aa2.45□□□□□ -2.02
VPS35-208ENST00000568612 DEPPQ9NTK1 212 aa2.45□□□□□ -2.02
VPS35-208ENST00000568612 ZNF492Q9P255 531 aa2.45□□□□□ -2.02
VPS35-208ENST00000568612 R4GMQ9 66 aa2.45□□□□□ -2.02
VPS35-208ENST00000568612 TDRD6O60522 2096 aaKnown RBP2.45□□□□□ -2.02
VPS35-208ENST00000568612 COL18A1P39060 1754 aa2.44□□□□□ -2.02
VPS35-208ENST00000568612 IGKV1D-8A0A087WSZ0 117 aa2.44□□□□□ -2.02
VPS35-208ENST00000568612 IGHV1-58A0A0C4DH39 117 aa2.44□□□□□ -2.02
VPS35-208ENST00000568612 TRBV5-4A0A0C4DH59 114 aa2.44□□□□□ -2.02
VPS35-208ENST00000568612 NGFP01138 241 aa2.44□□□□□ -2.02
VPS35-208ENST00000568612 IGLV3-25P01717 112 aa2.44□□□□□ -2.02
VPS35-208ENST00000568612 PRSS1P07477 247 aa2.44□□□□□ -2.02
VPS35-208ENST00000568612 ARL14EPLP0DKL9 152 aa2.44□□□□□ -2.02
VPS35-208ENST00000568612 ZNF823P16415 610 aa2.44□□□□□ -2.02
VPS35-208ENST00000568612 KRTAP10-7P60409 375 aaPredicted RBP2.44□□□□□ -2.02
VPS35-208ENST00000568612 MDP1Q86V88 176 aa2.44□□□□□ -2.02
VPS35-208ENST00000568612 SSMEM1Q8WWF3 244 aa2.44□□□□□ -2.02
VPS35-208ENST00000568612 RNASE6Q93091 150 aaKnown RBP2.44□□□□□ -2.02
VPS35-208ENST00000568612 EEF1AKMT3Q96AZ1 226 aa2.44□□□□□ -2.02
VPS35-208ENST00000568612 TM2D3Q9BRN9 247 aa2.44□□□□□ -2.02
VPS35-208ENST00000568612 TMEM243Q9BU79 118 aa2.44□□□□□ -2.02
VPS35-208ENST00000568612 PSENENQ9NZ42 101 aa2.44□□□□□ -2.02
VPS35-208ENST00000568612 ARID1AO14497 2285 aa2.44□□□□□ -2.02
VPS35-208ENST00000568612 TRBV7-1A0A0A6YYK4 115 aa2.43□□□□□ -2.02
VPS35-208ENST00000568612 TRAV41A0A0B4J266 112 aa2.43□□□□□ -2.02
VPS35-208ENST00000568612 TEX49A0A1B0GTD5 131 aa2.43□□□□□ -2.02
VPS35-208ENST00000568612 WI2-2373I1.2A0A1W2PRP0 233 aa2.43□□□□□ -2.02
VPS35-208ENST00000568612 HIGD1CA8MV81 97 aa2.43□□□□□ -2.02
VPS35-208ENST00000568612 C8orf87E5RJ46 101 aa2.43□□□□□ -2.02
VPS35-208ENST00000568612 SMKR1H3BMG3 65 aa2.43□□□□□ -2.02
VPS35-208ENST00000568612 H3BSH0 61 aa2.43□□□□□ -2.02
VPS35-208ENST00000568612 K7EMI3 77 aa2.43□□□□□ -2.02
VPS35-208ENST00000568612 ZNHIT1O43257 154 aa2.43□□□□□ -2.02
VPS35-208ENST00000568612 PIRTP0C851 137 aa2.43□□□□□ -2.02
VPS35-208ENST00000568612 IAPPP10997 89 aa2.43□□□□□ -2.02
VPS35-208ENST00000568612 FXYD4P59646 89 aa2.43□□□□□ -2.02
VPS35-208ENST00000568612 PCBD1P61457 104 aa2.43□□□□□ -2.02
VPS35-208ENST00000568612 TFF3Q07654 80 aa2.43□□□□□ -2.02
VPS35-208ENST00000568612 PVRIGQ6DKI7 326 aa2.43□□□□□ -2.02
VPS35-208ENST00000568612 LINC00596Q86U02 117 aa2.43□□□□□ -2.02
VPS35-208ENST00000568612 NDUFA11Q86Y39 141 aa2.43□□□□□ -2.02
VPS35-208ENST00000568612 Q8N7P7 452 aa2.43□□□□□ -2.02
VPS35-208ENST00000568612 LY6G5BQ8NDX9 201 aa2.43□□□□□ -2.02
VPS35-208ENST00000568612 KLHDC9Q8NEP7 349 aa2.43□□□□□ -2.02
VPS35-208ENST00000568612 SMCR5Q8TEV8 140 aa2.43□□□□□ -2.02
VPS35-208ENST00000568612 PAXXQ9BUH6 204 aa2.43□□□□□ -2.02
VPS35-208ENST00000568612 GFRA4Q9GZZ7 299 aa2.43□□□□□ -2.02
VPS35-208ENST00000568612 DYNLRB1Q9NP97 96 aa2.43□□□□□ -2.02
VPS35-208ENST00000568612 TMEM167BQ9NRX6 74 aa2.43□□□□□ -2.02
VPS35-208ENST00000568612 WDR83OSQ9Y284 106 aa2.43□□□□□ -2.02
VPS35-208ENST00000568612 ATG2BQ96BY7 2078 aa2.43□□□□□ -2.02
VPS35-208ENST00000568612 KIF26BQ2KJY2 2108 aa2.42□□□□□ -2.02
VPS35-208ENST00000568612 A0A0G2JRQ6 117 aa2.42□□□□□ -2.02
VPS35-208ENST00000568612 A0A1B0GWA3 101 aa2.42□□□□□ -2.02
VPS35-208ENST00000568612 SRRM4A7MD48 611 aaKnown RBP2.42□□□□□ -2.02
VPS35-208ENST00000568612 CYSRT1A8MQ03 144 aa2.42□□□□□ -2.02
VPS35-208ENST00000568612 TIMM17BO60830 172 aa2.42□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms