RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 C17orf112F2Z3M2 114 aa11.05□□□□□ -0.64
CLN3-229ENST00000567963 ZNF138P52744 262 aa11.05□□□□□ -0.64
CLN3-229ENST00000567963 PHYHIPLQ96FC7 376 aa11.05□□□□□ -0.64
CLN3-229ENST00000567963 PAX4O43316 350 aa11.04□□□□□ -0.64
CLN3-229ENST00000567963 RANP62826 216 aaKnown RBP11.04□□□□□ -0.64
CLN3-229ENST00000567963 LYPD1Q8N2G4 141 aa11.04□□□□□ -0.64
CLN3-229ENST00000567963 MAPKAPK5-AS1Q8N8E1 139 aa11.04□□□□□ -0.64
CLN3-229ENST00000567963 Q8TAT8 98 aa11.04□□□□□ -0.64
CLN3-229ENST00000567963 ARPC5LQ9BPX5 153 aa11.04□□□□□ -0.64
CLN3-229ENST00000567963 MRPL16Q9NX20 251 aaKnown RBP11.04□□□□□ -0.64
CLN3-229ENST00000567963 RBAKDNA6NC62 111 aa11.03□□□□□ -0.64
CLN3-229ENST00000567963 SIVA1O15304 175 aa11.03□□□□□ -0.64
CLN3-229ENST00000567963 OR7C2O60412 319 aa11.03□□□□□ -0.64
CLN3-229ENST00000567963 IGHV3-53P01767 116 aa11.03□□□□□ -0.64
CLN3-229ENST00000567963 CSN1S1P47710 185 aa11.03□□□□□ -0.64
CLN3-229ENST00000567963 H2BFSP57053 126 aa11.03□□□□□ -0.64
CLN3-229ENST00000567963 KRTAP10-2P60368 255 aa11.03□□□□□ -0.64
CLN3-229ENST00000567963 PPP1R1CQ8WVI7 109 aa11.03□□□□□ -0.64
CLN3-229ENST00000567963 PRO0255Q9UI72 69 aa11.03□□□□□ -0.64
CLN3-229ENST00000567963 HHLA3Q9XRX5 114 aa11.03□□□□□ -0.64
CLN3-229ENST00000567963 ICOSQ9Y6W8 199 aa11.03□□□□□ -0.64
CLN3-229ENST00000567963 DNAH5Q8TE73 4624 aa11.03□□□□□ -0.64
CLN3-229ENST00000567963 APOBP04114 4563 aaKnown RBP11.02□□□□□ -0.65
CLN3-229ENST00000567963 SLAQ13239 276 aa11.02□□□□□ -0.65
CLN3-229ENST00000567963 ATP5SQ99766 215 aa11.02□□□□□ -0.65
CLN3-229ENST00000567963 A0A1B0GVG6 124 aa11.01□□□□□ -0.65
CLN3-229ENST00000567963 SSNA1O43805 119 aa11.01□□□□□ -0.65
CLN3-229ENST00000567963 CRYBA4P53673 196 aa11.01□□□□□ -0.65
CLN3-229ENST00000567963 LINC00315P59091 139 aa11.01□□□□□ -0.65
CLN3-229ENST00000567963 ZNF415Q09FC8 603 aa11.01□□□□□ -0.65
CLN3-229ENST00000567963 FHL2Q14192 279 aa11.01□□□□□ -0.65
CLN3-229ENST00000567963 ZNF266Q14584 549 aa11.01□□□□□ -0.65
CLN3-229ENST00000567963 FFAR4Q5NUL3 377 aa11□□□□□ -0.65
CLN3-229ENST00000567963 MUC21Q5SSG8 566 aa11□□□□□ -0.65
CLN3-229ENST00000567963 Q6ZRN7 208 aaPredicted RBP11□□□□□ -0.65
CLN3-229ENST00000567963 MED28Q9H204 178 aa11□□□□□ -0.65
CLN3-229ENST00000567963 MDFICQ9P1T7 246 aa11□□□□□ -0.65
CLN3-229ENST00000567963 DIRC3C9JPN6 131 aa11□□□□□ -0.65
CLN3-229ENST00000567963 NXPH4O95158 308 aa11□□□□□ -0.65
CLN3-229ENST00000567963 MPC2O95563 127 aa11□□□□□ -0.65
CLN3-229ENST00000567963 UBE2L3P68036 154 aaKnown RBP11□□□□□ -0.65
CLN3-229ENST00000567963 MRPL23Q16540 153 aaKnown RBP11□□□□□ -0.65
CLN3-229ENST00000567963 Q6AWC8 147 aa11□□□□□ -0.65
CLN3-229ENST00000567963 LYPD5Q6UWN5 251 aa11□□□□□ -0.65
CLN3-229ENST00000567963 C8orf49Q96NF6 230 aa11□□□□□ -0.65
CLN3-229ENST00000567963 HSPB11Q9Y547 144 aa11□□□□□ -0.65
CLN3-229ENST00000567963 LENEPQ9Y5L5 61 aa11□□□□□ -0.65
CLN3-229ENST00000567963 KHDC3LQ587J8 217 aa10.99□□□□□ -0.65
CLN3-229ENST00000567963 Q8N1X5 172 aa10.99□□□□□ -0.65
CLN3-229ENST00000567963 IFNA5P01569 189 aa10.98□□□□□ -0.65
CLN3-229ENST00000567963 PET100P0DJ07 73 aa10.98□□□□□ -0.65
CLN3-229ENST00000567963 RPL12P30050 165 aaKnown RBP10.98□□□□□ -0.65
CLN3-229ENST00000567963 TAS2R45P59539 299 aa10.98□□□□□ -0.65
CLN3-229ENST00000567963 NEGR1Q7Z3B1 354 aa10.98□□□□□ -0.65
CLN3-229ENST00000567963 IQCF2Q8IXL9 164 aa10.98□□□□□ -0.65
CLN3-229ENST00000567963 SCGB1C1Q8TD33 95 aa10.98□□□□□ -0.65
CLN3-229ENST00000567963 RASL10AQ92737 203 aa10.98□□□□□ -0.65
CLN3-229ENST00000567963 TRGV4A0A0C4DH28 118 aa10.97□□□□□ -0.65
CLN3-229ENST00000567963 SFTA3P0C7M3 94 aa10.97□□□□□ -0.65
CLN3-229ENST00000567963 FAM159AQ6UWV7 190 aa10.97□□□□□ -0.65
CLN3-229ENST00000567963 TMED6Q8WW62 240 aa10.97□□□□□ -0.65
CLN3-229ENST00000567963 ASB13Q8WXK3 278 aa10.97□□□□□ -0.65
CLN3-229ENST00000567963 ZNF479Q96JC4 524 aa10.97□□□□□ -0.65
CLN3-229ENST00000567963 HYLS1Q96M11 299 aa10.97□□□□□ -0.65
CLN3-229ENST00000567963 SPXQ9BT56 116 aa10.97□□□□□ -0.65
CLN3-229ENST00000567963 SMIM3Q9BZL3 60 aa10.97□□□□□ -0.65
CLN3-229ENST00000567963 hCG_2014768A0A024R1R8 64 aa10.96□□□□□ -0.65
CLN3-229ENST00000567963 K7EQD1 137 aa10.96□□□□□ -0.65
CLN3-229ENST00000567963 EIF3GO75821 320 aaKnown RBP eCLIP10.96□□□□□ -0.65
CLN3-229ENST00000567963 TMEM183BQ1AE95 376 aa10.96□□□□□ -0.65
CLN3-229ENST00000567963 TMEM183AQ8IXX5 376 aa10.96□□□□□ -0.65
CLN3-229ENST00000567963 OR10G4Q8NGN3 311 aa10.96□□□□□ -0.65
CLN3-229ENST00000567963 MBD2Q9UBB5 411 aa10.96□□□□□ -0.65
CLN3-229ENST00000567963 TNFRSF18Q9Y5U5 241 aa10.96□□□□□ -0.65
CLN3-229ENST00000567963 TRGV11A0A075B6L2 103 aa10.95□□□□□ -0.66
CLN3-229ENST00000567963 PGPA6NDG6 321 aa10.95□□□□□ -0.66
CLN3-229ENST00000567963 GIPP09681 153 aaPredicted RBP10.95□□□□□ -0.66
CLN3-229ENST00000567963 TDRG1Q3Y452 100 aa10.95□□□□□ -0.66
CLN3-229ENST00000567963 SCRT2Q9NQ03 307 aa10.95□□□□□ -0.66
CLN3-229ENST00000567963 OTORQ9NRC9 128 aa10.95□□□□□ -0.66
CLN3-229ENST00000567963 SRIP30626 198 aa10.94□□□□□ -0.66
CLN3-229ENST00000567963 FAM74A1Q5RGS3 127 aa10.94□□□□□ -0.66
CLN3-229ENST00000567963 CMTM2Q8TAZ6 248 aa10.94□□□□□ -0.66
CLN3-229ENST00000567963 WFDC1Q9HC57 220 aa10.94□□□□□ -0.66
CLN3-229ENST00000567963 PGPEP1Q9NXJ5 209 aa10.94□□□□□ -0.66
CLN3-229ENST00000567963 TRAV9-2A0A087WT02 112 aa10.93□□□□□ -0.66
CLN3-229ENST00000567963 GNRH2O43555 120 aa10.93□□□□□ -0.66
CLN3-229ENST00000567963 ACOT6Q3I5F7 207 aaPredicted RBP10.93□□□□□ -0.66
CLN3-229ENST00000567963 PQLC2Q6ZP29 291 aa10.93□□□□□ -0.66
CLN3-229ENST00000567963 ARL6IP6Q8N6S5 226 aa10.93□□□□□ -0.66
CLN3-229ENST00000567963 RPH3ALQ9UNE2 315 aa10.93□□□□□ -0.66
CLN3-229ENST00000567963 LY96Q9Y6Y9 160 aa10.93□□□□□ -0.66
CLN3-229ENST00000567963 A0A1W2PPV4 95 aa10.93□□□□□ -0.66
CLN3-229ENST00000567963 ORM1P02763 201 aa10.93□□□□□ -0.66
CLN3-229ENST00000567963 GYPEP15421 78 aa10.93□□□□□ -0.66
CLN3-229ENST00000567963 NFE4Q86UQ8 179 aa10.93□□□□□ -0.66
CLN3-229ENST00000567963 NAGKQ9UJ70 344 aa10.93□□□□□ -0.66
CLN3-229ENST00000567963 TRAV4A0A0B4J268 109 aa10.92□□□□□ -0.66
CLN3-229ENST00000567963 K7EP13 123 aa10.92□□□□□ -0.66
CLN3-229ENST00000567963 EREGO14944 169 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms