RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 IGHV1OR15-1A0A075B7D0 117 aa10.29□□□□□ -0.76
CLN3-213ENST00000565047 A0A0J9YY99 117 aa10.29□□□□□ -0.76
CLN3-213ENST00000565047 CCL18P55774 89 aa10.29□□□□□ -0.76
CLN3-213ENST00000565047 KHDC3LQ587J8 217 aa10.29□□□□□ -0.76
CLN3-213ENST00000565047 Q5BKY6 102 aa10.29□□□□□ -0.76
CLN3-213ENST00000565047 LENEPQ9Y5L5 61 aa10.29□□□□□ -0.76
CLN3-213ENST00000565047 TAS2R45P59539 299 aa10.28□□□□□ -0.76
CLN3-213ENST00000565047 RAB2AP61019 212 aa10.28□□□□□ -0.76
CLN3-213ENST00000565047 Q6AWC8 147 aa10.28□□□□□ -0.76
CLN3-213ENST00000565047 ARL6IP6Q8N6S5 226 aa10.28□□□□□ -0.76
CLN3-213ENST00000565047 SUN5Q8TC36 379 aa10.28□□□□□ -0.76
CLN3-213ENST00000565047 TMED6Q8WW62 240 aa10.28□□□□□ -0.76
CLN3-213ENST00000565047 AQP10Q96PS8 301 aa10.28□□□□□ -0.76
CLN3-213ENST00000565047 UPK3BQ9BT76 320 aa10.28□□□□□ -0.76
CLN3-213ENST00000565047 KRTAP1-5Q9BYS1 174 aa10.28□□□□□ -0.76
CLN3-213ENST00000565047 APOBP04114 4563 aaKnown RBP10.27□□□□□ -0.76
CLN3-213ENST00000565047 A0A096LPF7 62 aa10.27□□□□□ -0.77
CLN3-213ENST00000565047 TRGV1A0A0A0MS02 117 aa10.27□□□□□ -0.77
CLN3-213ENST00000565047 CSN1S1P47710 185 aa10.27□□□□□ -0.77
CLN3-213ENST00000565047 ACOT6Q3I5F7 207 aaPredicted RBP10.27□□□□□ -0.77
CLN3-213ENST00000565047 PQLC2Q6ZP29 291 aa10.27□□□□□ -0.77
CLN3-213ENST00000565047 OR2G3Q8NGZ4 309 aa10.27□□□□□ -0.77
CLN3-213ENST00000565047 TVP23CQ96ET8 276 aa10.27□□□□□ -0.77
CLN3-213ENST00000565047 Q9H8V8 135 aa10.27□□□□□ -0.77
CLN3-213ENST00000565047 OTORQ9NRC9 128 aa10.27□□□□□ -0.77
CLN3-213ENST00000565047 MDFICQ9P1T7 246 aa10.27□□□□□ -0.77
CLN3-213ENST00000565047 ABCA13Q86UQ4 5058 aa10.27□□□□□ -0.77
CLN3-213ENST00000565047 TRGV2A0A075B6R0 118 aa10.26□□□□□ -0.77
CLN3-213ENST00000565047 PGPA6NDG6 321 aa10.26□□□□□ -0.77
CLN3-213ENST00000565047 RGS13O14921 159 aa10.26□□□□□ -0.77
CLN3-213ENST00000565047 TNP2Q05952 138 aa10.26□□□□□ -0.77
CLN3-213ENST00000565047 OR10G4Q8NGN3 311 aa10.26□□□□□ -0.77
CLN3-213ENST00000565047 OR10G9Q8NGN4 311 aa10.26□□□□□ -0.77
CLN3-213ENST00000565047 OR10G7Q8NGN6 311 aa10.26□□□□□ -0.77
CLN3-213ENST00000565047 ST6GAL2Q96JF0 529 aa10.26□□□□□ -0.77
CLN3-213ENST00000565047 MUC4Q99102 2169 aa10.25□□□□□ -0.77
CLN3-213ENST00000565047 STAG3L2P0CL84 134 aa10.25□□□□□ -0.77
CLN3-213ENST00000565047 STAG3L3P0CL85 134 aa10.25□□□□□ -0.77
CLN3-213ENST00000565047 TDRG1Q3Y452 100 aa10.25□□□□□ -0.77
CLN3-213ENST00000565047 SOHLH1Q5JUK2 328 aa10.25□□□□□ -0.77
CLN3-213ENST00000565047 C6orf223Q8N319 242 aa10.25□□□□□ -0.77
CLN3-213ENST00000565047 MRPS16Q9Y3D3 137 aaKnown RBP10.25□□□□□ -0.77
CLN3-213ENST00000565047 HMGB3O15347 200 aaKnown RBP10.24□□□□□ -0.77
CLN3-213ENST00000565047 MED14OSP0DP75 135 aa10.24□□□□□ -0.77
CLN3-213ENST00000565047 FHL2Q14192 279 aa10.24□□□□□ -0.77
CLN3-213ENST00000565047 MUC21Q5SSG8 566 aa10.24□□□□□ -0.77
CLN3-213ENST00000565047 HYLS1Q96M11 299 aa10.24□□□□□ -0.77
CLN3-213ENST00000565047 PSMG3Q9BT73 122 aaPredicted RBP10.24□□□□□ -0.77
CLN3-213ENST00000565047 MED28Q9H204 178 aa10.24□□□□□ -0.77
CLN3-213ENST00000565047 MRPL16Q9NX20 251 aaKnown RBP10.24□□□□□ -0.77
CLN3-213ENST00000565047 A0A1W2PPV4 95 aa10.23□□□□□ -0.77
CLN3-213ENST00000565047 G3V3Q6 166 aa10.23□□□□□ -0.77
CLN3-213ENST00000565047 GIPP09681 153 aaPredicted RBP10.23□□□□□ -0.77
CLN3-213ENST00000565047 ATP6V0CP27449 155 aa10.23□□□□□ -0.77
CLN3-213ENST00000565047 RASL10AQ92737 203 aa10.23□□□□□ -0.77
CLN3-213ENST00000565047 TRAV8-1A0A0A6YYK1 113 aa10.22□□□□□ -0.77
CLN3-213ENST00000565047 RNF222A6NCQ9 220 aa10.22□□□□□ -0.77
CLN3-213ENST00000565047 ARL14EPLP0DKL9 152 aa10.22□□□□□ -0.77
CLN3-213ENST00000565047 CRYBA4P53673 196 aa10.22□□□□□ -0.77
CLN3-213ENST00000565047 GNG5P63218 68 aa10.22□□□□□ -0.77
CLN3-213ENST00000565047 GOLT1AQ6ZVE7 132 aa10.22□□□□□ -0.77
CLN3-213ENST00000565047 IQCF2Q8IXL9 164 aa10.22□□□□□ -0.77
CLN3-213ENST00000565047 HSD17B11Q8NBQ5 300 aa10.22□□□□□ -0.77
CLN3-213ENST00000565047 ASB13Q8WXK3 278 aa10.22□□□□□ -0.77
CLN3-213ENST00000565047 RAB24Q969Q5 203 aa10.22□□□□□ -0.77
CLN3-213ENST00000565047 CDC34P49427 236 aaPredicted RBP10.21□□□□□ -0.77
CLN3-213ENST00000565047 SERF2P84101 59 aa10.21□□□□□ -0.77
CLN3-213ENST00000565047 ZNF415Q09FC8 603 aa10.21□□□□□ -0.77
CLN3-213ENST00000565047 ZNF575Q86XF7 245 aa10.21□□□□□ -0.77
CLN3-213ENST00000565047 ARPC5LQ9BPX5 153 aa10.21□□□□□ -0.77
CLN3-213ENST00000565047 SH3BGRL3Q9H299 93 aa10.21□□□□□ -0.77
CLN3-213ENST00000565047 PRO0255Q9UI72 69 aa10.21□□□□□ -0.77
CLN3-213ENST00000565047 TNFSF18Q9UNG2 199 aa10.21□□□□□ -0.77
CLN3-213ENST00000565047 IGHV3-16A0A0C4DH30 117 aa10.2□□□□□ -0.78
CLN3-213ENST00000565047 A0A1W2PPQ1 181 aa10.2□□□□□ -0.78
CLN3-213ENST00000565047 GNRH2O43555 120 aa10.2□□□□□ -0.78
CLN3-213ENST00000565047 IGLV2-11P01706 119 aa10.2□□□□□ -0.78
CLN3-213ENST00000565047 IGHV3-53P01767 116 aa10.2□□□□□ -0.78
CLN3-213ENST00000565047 TMEM183BQ1AE95 376 aa10.2□□□□□ -0.78
CLN3-213ENST00000565047 FAM74A1Q5RGS3 127 aa10.2□□□□□ -0.78
CLN3-213ENST00000565047 TMEM183AQ8IXX5 376 aa10.2□□□□□ -0.78
CLN3-213ENST00000565047 CMTM2Q8TAZ6 248 aa10.2□□□□□ -0.78
CLN3-213ENST00000565047 ZNF479Q96JC4 524 aa10.2□□□□□ -0.78
CLN3-213ENST00000565047 HHLA3Q9XRX5 114 aa10.2□□□□□ -0.78
CLN3-213ENST00000565047 PAX4O43316 350 aa10.19□□□□□ -0.78
CLN3-213ENST00000565047 TCRAP04437 139 aa10.19□□□□□ -0.78
CLN3-213ENST00000565047 GCHFRP30047 84 aa10.19□□□□□ -0.78
CLN3-213ENST00000565047 SLAQ13239 276 aa10.19□□□□□ -0.78
CLN3-213ENST00000565047 RPL7L1Q6DKI1 246 aaKnown RBP10.19□□□□□ -0.78
CLN3-213ENST00000565047 FAM159AQ6UWV7 190 aa10.19□□□□□ -0.78
CLN3-213ENST00000565047 SPXQ9BT56 116 aa10.19□□□□□ -0.78
CLN3-213ENST00000565047 RPH3ALQ9UNE2 315 aa10.19□□□□□ -0.78
CLN3-213ENST00000565047 TRGV11A0A075B6L2 103 aa10.18□□□□□ -0.78
CLN3-213ENST00000565047 TRAV21A0A0B4J279 112 aa10.18□□□□□ -0.78
CLN3-213ENST00000565047 GGTLC3B5MD39 225 aa10.18□□□□□ -0.78
CLN3-213ENST00000565047 F6UZH7 168 aa10.18□□□□□ -0.78
CLN3-213ENST00000565047 MBP02144 154 aa10.18□□□□□ -0.78
CLN3-213ENST00000565047 BTF3P20290 206 aaKnown RBP10.18□□□□□ -0.78
CLN3-213ENST00000565047 ZNF80P51504 273 aaPredicted RBP10.18□□□□□ -0.78
CLN3-213ENST00000565047 ZNF726P1Q15940 193 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms