RNA–Protein interactions for RNA: ENST00000562670.5

CLK3-209, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 544 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-209ENST00000562670 TSPOP30536 169 aa10.32□□□□□ -0.76
CLK3-209ENST00000562670 CRIP1P50238 77 aa10.32□□□□□ -0.76
CLK3-209ENST00000562670 PRR31Q5SQ13 230 aa10.32□□□□□ -0.76
CLK3-209ENST00000562670 PRR27Q6MZM9 219 aa10.32□□□□□ -0.76
CLK3-209ENST00000562670 AMTNQ6UX39 209 aa10.32□□□□□ -0.76
CLK3-209ENST00000562670 LINC00322Q6ZN03 302 aaPredicted RBP10.32□□□□□ -0.76
CLK3-209ENST00000562670 LURAP1LQ8IV03 231 aa10.32□□□□□ -0.76
CLK3-209ENST00000562670 NUDT10Q8NFP7 164 aa10.32□□□□□ -0.76
CLK3-209ENST00000562670 DAZAP1Q96EP5 407 aaKnown RBP10.32□□□□□ -0.76
CLK3-209ENST00000562670 NUDT11Q96G61 164 aa10.32□□□□□ -0.76
CLK3-209ENST00000562670 RPP21Q9H633 154 aaKnown RBP10.32□□□□□ -0.76
CLK3-209ENST00000562670 C19orf73Q9NVV2 129 aa10.32□□□□□ -0.76
CLK3-209ENST00000562670 STAB1Q9NY15 2570 aa10.32□□□□□ -0.76
CLK3-209ENST00000562670 TRRAPQ9Y4A5 3859 aa10.31□□□□□ -0.76
CLK3-209ENST00000562670 TRAV9-1A0A075B6T8 112 aa10.31□□□□□ -0.76
CLK3-209ENST00000562670 FAM231BA6NCW3 169 aa10.31□□□□□ -0.76
CLK3-209ENST00000562670 GATCO43716 136 aaKnown RBP10.31□□□□□ -0.76
CLK3-209ENST00000562670 SH2D1AO60880 128 aa10.31□□□□□ -0.76
CLK3-209ENST00000562670 Q6AWC8 147 aa10.31□□□□□ -0.76
CLK3-209ENST00000562670 CBLN2Q8IUK8 224 aa10.31□□□□□ -0.76
CLK3-209ENST00000562670 YPEL4Q96NS1 127 aa10.31□□□□□ -0.76
CLK3-209ENST00000562670 FABP5P3A8MUU1 101 aa10.3□□□□□ -0.76
CLK3-209ENST00000562670 ZNF705GA8MUZ8 300 aaPredicted RBP10.3□□□□□ -0.76
CLK3-209ENST00000562670 CXCL1P09341 107 aa10.3□□□□□ -0.76
CLK3-209ENST00000562670 CDKN1BP46527 198 aa10.3□□□□□ -0.76
CLK3-209ENST00000562670 ZNF80P51504 273 aaPredicted RBP10.3□□□□□ -0.76
CLK3-209ENST00000562670 RIPPLY3P57055 190 aa10.3□□□□□ -0.76
CLK3-209ENST00000562670 LINC01559Q495D7 138 aa10.3□□□□□ -0.76
CLK3-209ENST00000562670 ACTL10Q5JWF8 245 aa10.3□□□□□ -0.76
CLK3-209ENST00000562670 TMEM88Q6PEY1 159 aa10.3□□□□□ -0.76
CLK3-209ENST00000562670 BTF3L4Q96K17 158 aa10.3□□□□□ -0.76
CLK3-209ENST00000562670 GFRA4Q9GZZ7 299 aa10.3□□□□□ -0.76
CLK3-209ENST00000562670 IL36BQ9NZH7 164 aa10.3□□□□□ -0.76
CLK3-209ENST00000562670 TRAV21A0A0B4J279 112 aa10.29□□□□□ -0.76
CLK3-209ENST00000562670 KNCNA6PVL3 124 aa10.29□□□□□ -0.76
CLK3-209ENST00000562670 A8MWL6 223 aa10.29□□□□□ -0.76
CLK3-209ENST00000562670 AMBPP02760 352 aa10.29□□□□□ -0.76
CLK3-209ENST00000562670 CD7P09564 240 aa10.29□□□□□ -0.76
CLK3-209ENST00000562670 IGLL1P15814 213 aa10.29□□□□□ -0.76
CLK3-209ENST00000562670 S100PP25815 95 aa10.29□□□□□ -0.76
CLK3-209ENST00000562670 RPS20P60866 119 aaKnown RBP10.29□□□□□ -0.76
CLK3-209ENST00000562670 BTN1A1Q13410 526 aa10.29□□□□□ -0.76
CLK3-209ENST00000562670 PRR9Q5T870 116 aa10.29□□□□□ -0.76
CLK3-209ENST00000562670 KCNIP4Q6PIL6 250 aa10.29□□□□□ -0.76
CLK3-209ENST00000562670 TRPT1Q86TN4 253 aaKnown RBP10.29□□□□□ -0.76
CLK3-209ENST00000562670 GTSCR1Q86UQ5 136 aa10.29□□□□□ -0.76
CLK3-209ENST00000562670 TSKUQ8WUA8 353 aa10.29□□□□□ -0.76
CLK3-209ENST00000562670 ZMAT5Q9UDW3 170 aaKnown RBP10.29□□□□□ -0.76
CLK3-209ENST00000562670 TRBV24-1A0A075B6N3 115 aa10.28□□□□□ -0.76
CLK3-209ENST00000562670 SMIM27A0A1W2PRY6 76 aa10.28□□□□□ -0.76
CLK3-209ENST00000562670 XKRY2A2RUG3 117 aa10.28□□□□□ -0.76
CLK3-209ENST00000562670 GPX1P07203 203 aa10.28□□□□□ -0.76
CLK3-209ENST00000562670 STHQ8IWL8 128 aa10.28□□□□□ -0.76
CLK3-209ENST00000562670 C7orf71A4D174 169 aa10.27□□□□□ -0.77
CLK3-209ENST00000562670 RBMY1BA6NDE4 496 aaKnown RBP10.27□□□□□ -0.77
CLK3-209ENST00000562670 RBMY1EA6NEQ0 496 aaKnown RBP10.27□□□□□ -0.77
CLK3-209ENST00000562670 RBMY1DP0C7P1 496 aaKnown RBP10.27□□□□□ -0.77
CLK3-209ENST00000562670 EGFEM1PQ0D2K5 195 aa10.27□□□□□ -0.77
CLK3-209ENST00000562670 ELOBQ15370 118 aa10.27□□□□□ -0.77
CLK3-209ENST00000562670 OR2D3Q8NGH3 330 aa10.27□□□□□ -0.77
CLK3-209ENST00000562670 C20orf144Q9BQM9 153 aa10.27□□□□□ -0.77
CLK3-209ENST00000562670 PYGO2Q9BRQ0 406 aa10.27□□□□□ -0.77
CLK3-209ENST00000562670 FOXA3P55318 350 aaPredicted RBP10.26□□□□□ -0.77
CLK3-209ENST00000562670 ZNF124Q15973 351 aa10.26□□□□□ -0.77
CLK3-209ENST00000562670 GFI1BQ5VTD9 330 aa10.26□□□□□ -0.77
CLK3-209ENST00000562670 MDFIQ99750 246 aa10.26□□□□□ -0.77
CLK3-209ENST00000562670 CMYA5Q8N3K9 4069 aa10.25□□□□□ -0.77
CLK3-209ENST00000562670 TMEM189A5PLL7 270 aa10.25□□□□□ -0.77
CLK3-209ENST00000562670 NUTF2P61970 127 aaKnown RBP10.25□□□□□ -0.77
CLK3-209ENST00000562670 SPINK13Q1W4C9 94 aa10.25□□□□□ -0.77
CLK3-209ENST00000562670 KRTAP21-3Q3LHN1 58 aa10.25□□□□□ -0.77
CLK3-209ENST00000562670 TDRG1Q3Y452 100 aa10.25□□□□□ -0.77
CLK3-209ENST00000562670 NEU1Q99519 415 aa10.25□□□□□ -0.77
CLK3-209ENST00000562670 NAT8BQ9UHF3 227 aa10.25□□□□□ -0.77
CLK3-209ENST00000562670 SORL1Q92673 2214 aa10.24□□□□□ -0.77
CLK3-209ENST00000562670 IGKV3D-20A0A0C4DH25 116 aa10.24□□□□□ -0.77
CLK3-209ENST00000562670 A0A1W2PPQ1 181 aa10.24□□□□□ -0.77
CLK3-209ENST00000562670 COLCA2A8K830 154 aa10.24□□□□□ -0.77
CLK3-209ENST00000562670 M0R2Z0 102 aa10.24□□□□□ -0.77
CLK3-209ENST00000562670 CRXO43186 299 aaPredicted RBP10.24□□□□□ -0.77
CLK3-209ENST00000562670 ZNF324O75467 553 aaPredicted RBP10.24□□□□□ -0.77
CLK3-209ENST00000562670 CA1P00915 261 aaPredicted RBP10.24□□□□□ -0.77
CLK3-209ENST00000562670 IGKV3-20P01619 116 aa10.24□□□□□ -0.77
CLK3-209ENST00000562670 TYMSP04818 313 aa10.24□□□□□ -0.77
CLK3-209ENST00000562670 RNASE4P34096 147 aaKnown RBP10.24□□□□□ -0.77
CLK3-209ENST00000562670 RPL19P84098 196 aaKnown RBP10.24□□□□□ -0.77
CLK3-209ENST00000562670 DNLZQ5SXM8 178 aa10.24□□□□□ -0.77
CLK3-209ENST00000562670 MORN3Q6PF18 240 aaPredicted RBP10.24□□□□□ -0.77
CLK3-209ENST00000562670 C11orf21Q9P2W6 132 aa10.24□□□□□ -0.77
CLK3-209ENST00000562670 URGCP-MRPS24S4R325 110 aa10.24□□□□□ -0.77
CLK3-209ENST00000562670 HIGD1CA8MV81 97 aa10.23□□□□□ -0.77
CLK3-209ENST00000562670 INSP01308 110 aa10.23□□□□□ -0.77
CLK3-209ENST00000562670 ORM1P02763 201 aa10.23□□□□□ -0.77
CLK3-209ENST00000562670 CTRLP40313 264 aa10.23□□□□□ -0.77
CLK3-209ENST00000562670 KIR3DS1Q14943 382 aa10.23□□□□□ -0.77
CLK3-209ENST00000562670 ATP5L2Q7Z4Y8 100 aa10.23□□□□□ -0.77
CLK3-209ENST00000562670 GTSF1Q8WW33 167 aa10.23□□□□□ -0.77
CLK3-209ENST00000562670 KCNS1Q96KK3 526 aa10.23□□□□□ -0.77
CLK3-209ENST00000562670 LINC00467Q9BRT7 94 aa10.23□□□□□ -0.77
CLK3-209ENST00000562670 IGLC6P0CF74 106 aa10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms