RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 GAGE13Q4V321 117 aa8.85□□□□□ -0.99
LDLR-208ENST00000558518 ZNF562Q6V9R5 426 aa8.85□□□□□ -0.99
LDLR-208ENST00000558518 CLEC3BP05452 202 aa8.84□□□□□ -0.99
LDLR-208ENST00000558518 RPL7P18124 248 aaKnown RBP8.84□□□□□ -0.99
LDLR-208ENST00000558518 A0A1B0GW15 77 aa8.84□□□□□ -0.99
LDLR-208ENST00000558518 FABP5P3A8MUU1 101 aa8.84□□□□□ -0.99
LDLR-208ENST00000558518 NBR2O15453 112 aa8.84□□□□□ -0.99
LDLR-208ENST00000558518 RAB9AP51151 201 aa8.84□□□□□ -0.99
LDLR-208ENST00000558518 CEND1Q8N111 149 aa8.84□□□□□ -0.99
LDLR-208ENST00000558518 CFHR4Q92496 578 aa8.84□□□□□ -0.99
LDLR-208ENST00000558518 C20orf78Q9BR46 151 aa8.84□□□□□ -0.99
LDLR-208ENST00000558518 NCOR1P1Q9H4R4 102 aa8.84□□□□□ -0.99
LDLR-208ENST00000558518 WI2-2373I1.2A0A1W2PRP0 233 aa8.84□□□□□ -1
LDLR-208ENST00000558518 E7EQL1 145 aa8.84□□□□□ -1
LDLR-208ENST00000558518 ZNF883P0CG24 379 aa8.84□□□□□ -1
LDLR-208ENST00000558518 CKS1BP61024 79 aa8.84□□□□□ -1
LDLR-208ENST00000558518 TMEM30BQ3MIR4 351 aa8.84□□□□□ -1
LDLR-208ENST00000558518 CD300EQ496F6 205 aaPredicted RBP8.84□□□□□ -1
LDLR-208ENST00000558518 PRR30Q53SZ7 412 aaPredicted RBP8.84□□□□□ -1
LDLR-208ENST00000558518 SPAG8Q99932 426 aaPredicted RBP8.84□□□□□ -1
LDLR-208ENST00000558518 TMEM14CQ9P0S9 112 aa8.84□□□□□ -1
LDLR-208ENST00000558518 OR11H12B2RN74 326 aa8.83□□□□□ -1
LDLR-208ENST00000558518 IGLL5B9A064 214 aa8.83□□□□□ -1
LDLR-208ENST00000558518 SCGB1C2P0DMR2 95 aa8.83□□□□□ -1
LDLR-208ENST00000558518 C12orf74Q32Q52 190 aa8.83□□□□□ -1
LDLR-208ENST00000558518 OR11H1Q8NG94 326 aa8.83□□□□□ -1
LDLR-208ENST00000558518 OR11H2Q8NH07 326 aa8.83□□□□□ -1
LDLR-208ENST00000558518 PGPEP1Q9NXJ5 209 aa8.83□□□□□ -1
LDLR-208ENST00000558518 CEACAM3P40198 252 aa8.83□□□□□ -1
LDLR-208ENST00000558518 LINC00574Q9H8X3 128 aa8.83□□□□□ -1
LDLR-208ENST00000558518 SETD2Q9BYW2 2564 aaPredicted RBP8.83□□□□□ -1
LDLR-208ENST00000558518 PVRIGQ6DKI7 326 aa8.82□□□□□ -1
LDLR-208ENST00000558518 CLEC19AQ6UXS0 136 aa8.82□□□□□ -1
LDLR-208ENST00000558518 ASCL5Q7RTU5 278 aa8.82□□□□□ -1
LDLR-208ENST00000558518 MUC6Q6W4X9 2439 aa8.82□□□□□ -1
LDLR-208ENST00000558518 CHD8Q9HCK8 2581 aa8.82□□□□□ -1
LDLR-208ENST00000558518 CELSR1Q9NYQ6 3014 aa8.82□□□□□ -1
LDLR-208ENST00000558518 IGHV3OR16-10A0A075B7F0 116 aa8.82□□□□□ -1
LDLR-208ENST00000558518 SCGB3A1Q96QR1 104 aa8.82□□□□□ -1
LDLR-208ENST00000558518 THBDP07204 575 aa8.82□□□□□ -1
LDLR-208ENST00000558518 HLA-DRB4P13762 266 aa8.82□□□□□ -1
LDLR-208ENST00000558518 KLHL30-AS1Q8NEE0 82 aa8.82□□□□□ -1
LDLR-208ENST00000558518 HLA-DRB4X5D2U9 266 aa8.82□□□□□ -1
LDLR-208ENST00000558518 A0A1B0GV72 72 aa8.81□□□□□ -1
LDLR-208ENST00000558518 IGHV3-64A0A075B6Q5 118 aa8.81□□□□□ -1
LDLR-208ENST00000558518 INS-IGF2F8WCM5 200 aa8.81□□□□□ -1
LDLR-208ENST00000558518 ANXA2RQ3ZCQ2 193 aa8.81□□□□□ -1
LDLR-208ENST00000558518 SYT8Q8NBV8 401 aa8.81□□□□□ -1
LDLR-208ENST00000558518 HHLA3Q9XRX5 114 aa8.81□□□□□ -1
LDLR-208ENST00000558518 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP8.81□□□□□ -1
LDLR-208ENST00000558518 TMEM78Q5T7P6 136 aa8.81□□□□□ -1
LDLR-208ENST00000558518 NXT2Q9NPJ8 142 aaKnown RBP8.81□□□□□ -1
LDLR-208ENST00000558518 DPM3Q9P2X0 92 aa8.81□□□□□ -1
LDLR-208ENST00000558518 LINC01549A6NIU2 74 aa8.8□□□□□ -1
LDLR-208ENST00000558518 NDUFS8O00217 210 aa8.8□□□□□ -1
LDLR-208ENST00000558518 RNF185Q96GF1 192 aa8.8□□□□□ -1
LDLR-208ENST00000558518 RAXQ9Y2V3 346 aa8.8□□□□□ -1
LDLR-208ENST00000558518 F5H697 171 aa8.8□□□□□ -1
LDLR-208ENST00000558518 IGLV1-47P01700 117 aa8.8□□□□□ -1
LDLR-208ENST00000558518 CCDC144NLQ6NUI1 221 aa8.8□□□□□ -1
LDLR-208ENST00000558518 ZNF493Q6ZR52 646 aa8.8□□□□□ -1
LDLR-208ENST00000558518 LINC00311Q8N616 119 aa8.8□□□□□ -1
LDLR-208ENST00000558518 C14orf178Q8N769 122 aaPredicted RBP8.8□□□□□ -1
LDLR-208ENST00000558518 BEX4Q9NWD9 120 aaPredicted RBP8.8□□□□□ -1
LDLR-208ENST00000558518 ZNF815PA8K554 130 aa8.8□□□□□ -1
LDLR-208ENST00000558518 OVOL3O00110 214 aa8.8□□□□□ -1
LDLR-208ENST00000558518 SRD5A1P18405 259 aa8.8□□□□□ -1
LDLR-208ENST00000558518 GRNP28799 593 aaKnown RBP8.8□□□□□ -1
LDLR-208ENST00000558518 DLX6P56179 175 aa8.8□□□□□ -1
LDLR-208ENST00000558518 LAGE3Q14657 143 aa8.8□□□□□ -1
LDLR-208ENST00000558518 C15orf32Q32M92 178 aa8.8□□□□□ -1
LDLR-208ENST00000558518 FOXI2Q6ZQN5 318 aa8.8□□□□□ -1
LDLR-208ENST00000558518 SPANXB1Q9NS25 103 aaPredicted RBP8.79□□□□□ -1
LDLR-208ENST00000558518 TRAV26-1A0A087WT03 109 aa8.79□□□□□ -1
LDLR-208ENST00000558518 G3V318 75 aa8.79□□□□□ -1
LDLR-208ENST00000558518 IGF1P05019 195 aa8.79□□□□□ -1
LDLR-208ENST00000558518 CD3EP07766 207 aa8.79□□□□□ -1
LDLR-208ENST00000558518 FAM57AQ8TBR7 257 aa8.79□□□□□ -1
LDLR-208ENST00000558518 HOXA3O43365 443 aaPredicted RBP8.79□□□□□ -1
LDLR-208ENST00000558518 RPL39LQ96EH5 51 aaKnown RBP8.79□□□□□ -1
LDLR-208ENST00000558518 SIVA1O15304 175 aa8.78□□□□□ -1
LDLR-208ENST00000558518 C5orf64Q2M2E5 130 aa8.78□□□□□ -1
LDLR-208ENST00000558518 ZFP2Q6ZN57 461 aa8.78□□□□□ -1
LDLR-208ENST00000558518 C16orf92Q96LL3 132 aa8.78□□□□□ -1
LDLR-208ENST00000558518 FANCD2OSQ96PS1 177 aa8.78□□□□□ -1
LDLR-208ENST00000558518 ATP6V0BQ99437 205 aa8.78□□□□□ -1
LDLR-208ENST00000558518 RAB1BQ9H0U4 201 aa8.78□□□□□ -1
LDLR-208ENST00000558518 C11orf21Q9P2W6 132 aa8.78□□□□□ -1
LDLR-208ENST00000558518 CHTOPQ9Y3Y2 248 aaKnown RBP8.78□□□□□ -1
LDLR-208ENST00000558518 ATP5LO75964 103 aa8.78□□□□□ -1
LDLR-208ENST00000558518 LYPD1Q8N2G4 141 aa8.78□□□□□ -1
LDLR-208ENST00000558518 NUP37Q8NFH4 326 aa8.78□□□□□ -1
LDLR-208ENST00000558518 CRYGBP07316 175 aa8.78□□□□□ -1
LDLR-208ENST00000558518 SLC25A16P16260 332 aa8.78□□□□□ -1
LDLR-208ENST00000558518 C1orf122Q6ZSJ8 110 aa8.78□□□□□ -1
LDLR-208ENST00000558518 SMAD5-AS1Q9Y6J3 95 aa8.78□□□□□ -1
LDLR-208ENST00000558518 PTPN13Q12923 2485 aa8.78□□□□□ -1
LDLR-208ENST00000558518 IGKV3-20P01619 116 aa8.77□□□□□ -1.01
LDLR-208ENST00000558518 SPINK8P0C7L1 97 aa8.77□□□□□ -1.01
LDLR-208ENST00000558518 AGPAT4-IT1Q9H0P7 198 aa8.77□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms