RNA–Protein interactions for RNA: ENST00000554079.1

SIX4-202, Transcript of SIX homeobox 4, humanhuman

TSL 1 (best)

Gene SIX4, Length 2,003 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4-202ENST00000554079 WT1-ASQ06250 92 aa7.4□□□□□ -1.23
SIX4-202ENST00000554079 LAGE3Q14657 143 aa7.4□□□□□ -1.23
SIX4-202ENST00000554079 ATXN8Q156A1 80 aa7.4□□□□□ -1.23
SIX4-202ENST00000554079 ZNF575Q86XF7 245 aa7.4□□□□□ -1.23
SIX4-202ENST00000554079 C2orf48Q96LS8 159 aa7.4□□□□□ -1.23
SIX4-202ENST00000554079 DUX3Q96PT4 197 aa7.4□□□□□ -1.23
SIX4-202ENST00000554079 SPANXDQ9BXN6 97 aa7.4□□□□□ -1.23
SIX4-202ENST00000554079 MSRB1Q9NZV6 116 aa7.4□□□□□ -1.23
SIX4-202ENST00000554079 IGHV1-45A0A0A0MS14 117 aa7.39□□□□□ -1.23
SIX4-202ENST00000554079 CRYGDP07320 174 aa7.39□□□□□ -1.23
SIX4-202ENST00000554079 PRB4P10163 310 aaPredicted RBP7.39□□□□□ -1.23
SIX4-202ENST00000554079 COX7CP15954 63 aa7.39□□□□□ -1.23
SIX4-202ENST00000554079 VKORC1Q9BQB6 163 aa7.39□□□□□ -1.23
SIX4-202ENST00000554079 CNFNQ9BYD5 112 aa7.39□□□□□ -1.23
SIX4-202ENST00000554079 MSRB2Q9Y3D2 182 aa7.39□□□□□ -1.23
SIX4-202ENST00000554079 IGHV1OR21-1A0A087WYE8 117 aa7.39□□□□□ -1.23
SIX4-202ENST00000554079 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa7.39□□□□□ -1.23
SIX4-202ENST00000554079 IQCF6A8MYZ5 107 aa7.39□□□□□ -1.23
SIX4-202ENST00000554079 CDX4O14627 284 aaPredicted RBP7.39□□□□□ -1.23
SIX4-202ENST00000554079 ATP5G1P05496 136 aa7.39□□□□□ -1.23
SIX4-202ENST00000554079 C3orf36Q3SXR2 165 aa7.39□□□□□ -1.23
SIX4-202ENST00000554079 GAGE2AQ6NT46 116 aa7.39□□□□□ -1.23
SIX4-202ENST00000554079 HRCT1Q6UXD1 115 aa7.39□□□□□ -1.23
SIX4-202ENST00000554079 SIGLEC15Q6ZMC9 328 aa7.39□□□□□ -1.23
SIX4-202ENST00000554079 Q6ZS46 218 aa7.39□□□□□ -1.23
SIX4-202ENST00000554079 ASCL5Q7RTU5 278 aa7.39□□□□□ -1.23
SIX4-202ENST00000554079 NEXN-AS1Q8NBZ9 246 aa7.39□□□□□ -1.23
SIX4-202ENST00000554079 TMEM263Q8WUH6 116 aaKnown RBP7.39□□□□□ -1.23
SIX4-202ENST00000554079 MUC3AQ02505 3323 aa7.38□□□□□ -1.23
SIX4-202ENST00000554079 CGB3P0DN86 165 aa7.38□□□□□ -1.23
SIX4-202ENST00000554079 CGB7P0DN87 165 aa7.38□□□□□ -1.23
SIX4-202ENST00000554079 SUB1P53999 127 aaKnown RBP eCLIP7.38□□□□□ -1.23
SIX4-202ENST00000554079 PCOLCEQ15113 449 aa7.38□□□□□ -1.23
SIX4-202ENST00000554079 TMEM170BQ5T4T1 132 aa7.38□□□□□ -1.23
SIX4-202ENST00000554079 COX8CQ7Z4L0 72 aa7.38□□□□□ -1.23
SIX4-202ENST00000554079 KLF14Q8TD94 323 aaPredicted RBP7.38□□□□□ -1.23
SIX4-202ENST00000554079 DPH3Q96FX2 82 aa7.38□□□□□ -1.23
SIX4-202ENST00000554079 LINC00527Q9UJ94 153 aa7.38□□□□□ -1.23
SIX4-202ENST00000554079 PRR14LQ5THK1 2151 aa7.37□□□□□ -1.23
SIX4-202ENST00000554079 TRBV19A0A075B6N1 114 aa7.37□□□□□ -1.23
SIX4-202ENST00000554079 ZNF883P0CG24 379 aa7.37□□□□□ -1.23
SIX4-202ENST00000554079 EGR2P11161 476 aaPredicted RBP7.37□□□□□ -1.23
SIX4-202ENST00000554079 GATA4P43694 442 aa7.37□□□□□ -1.23
SIX4-202ENST00000554079 MZT1Q08AG7 82 aa7.37□□□□□ -1.23
SIX4-202ENST00000554079 TCF15Q12870 199 aa7.37□□□□□ -1.23
SIX4-202ENST00000554079 NRACQ8N912 160 aa7.37□□□□□ -1.23
SIX4-202ENST00000554079 KLHL30-AS1Q8NEE0 82 aa7.37□□□□□ -1.23
SIX4-202ENST00000554079 C17orf77Q96MU5 243 aa7.37□□□□□ -1.23
SIX4-202ENST00000554079 RAI1Q7Z5J4 1906 aaPredicted RBP7.37□□□□□ -1.23
SIX4-202ENST00000554079 MBD3L4A6NDZ8 208 aaPredicted RBP7.37□□□□□ -1.23
SIX4-202ENST00000554079 MBD3L3A6NE82 208 aaPredicted RBP7.37□□□□□ -1.23
SIX4-202ENST00000554079 MBD3L5A6NJ08 208 aaPredicted RBP7.37□□□□□ -1.23
SIX4-202ENST00000554079 C17orf58Q2M2W7 97 aa7.37□□□□□ -1.23
SIX4-202ENST00000554079 DEFB133Q30KQ1 61 aa7.37□□□□□ -1.23
SIX4-202ENST00000554079 SLC25A29Q8N8R3 303 aa7.37□□□□□ -1.23
SIX4-202ENST00000554079 CYSTM1Q9H1C7 97 aa7.37□□□□□ -1.23
SIX4-202ENST00000554079 ARFGEF3Q5TH69 2177 aa7.36□□□□□ -1.23
SIX4-202ENST00000554079 TRAV17A0A0B4J275 112 aa7.36□□□□□ -1.23
SIX4-202ENST00000554079 A0A0B4J2C4 111 aa7.36□□□□□ -1.23
SIX4-202ENST00000554079 A0A0G2JNJ9 132 aa7.36□□□□□ -1.23
SIX4-202ENST00000554079 ORM1P02763 201 aa7.36□□□□□ -1.23
SIX4-202ENST00000554079 RFPL3SP0C7P2 107 aa7.36□□□□□ -1.23
SIX4-202ENST00000554079 ZNF22P17026 224 aaPredicted RBP7.36□□□□□ -1.23
SIX4-202ENST00000554079 CD40P25942 277 aa7.36□□□□□ -1.23
SIX4-202ENST00000554079 PRDX2P32119 198 aa7.36□□□□□ -1.23
SIX4-202ENST00000554079 C10orf55Q5SWW7 151 aa7.36□□□□□ -1.23
SIX4-202ENST00000554079 PVRIGQ6DKI7 326 aa7.36□□□□□ -1.23
SIX4-202ENST00000554079 Q9UFV3 132 aa7.36□□□□□ -1.23
SIX4-202ENST00000554079 H3BT86 120 aa7.35□□□□□ -1.23
SIX4-202ENST00000554079 H7C423 109 aa7.35□□□□□ -1.23
SIX4-202ENST00000554079 C2orf82Q6UX34 121 aa7.35□□□□□ -1.23
SIX4-202ENST00000554079 LYPD1Q8N2G4 141 aa7.35□□□□□ -1.23
SIX4-202ENST00000554079 IGKV1D-17A0A075B6S4 117 aa7.35□□□□□ -1.23
SIX4-202ENST00000554079 J3QLI3 93 aa7.35□□□□□ -1.23
SIX4-202ENST00000554079 IGHV4-39P01824 125 aa7.35□□□□□ -1.23
SIX4-202ENST00000554079 TMEM258P61165 79 aa7.35□□□□□ -1.23
SIX4-202ENST00000554079 SRSF2Q01130 221 aaKnown RBP7.35□□□□□ -1.23
SIX4-202ENST00000554079 METTL26Q96S19 204 aa7.35□□□□□ -1.23
SIX4-202ENST00000554079 CXXC4Q9H2H0 198 aa7.35□□□□□ -1.23
SIX4-202ENST00000554079 F5P12259 2224 aa7.34□□□□□ -1.23
SIX4-202ENST00000554079 hADV29S1A0JD25 119 aa7.34□□□□□ -1.23
SIX4-202ENST00000554079 M0R3E3 92 aa7.34□□□□□ -1.23
SIX4-202ENST00000554079 ZNF80P51504 273 aaPredicted RBP7.34□□□□□ -1.23
SIX4-202ENST00000554079 TSPEAR-AS2P59090 65 aa7.34□□□□□ -1.23
SIX4-202ENST00000554079 HERVK_113P61574 105 aa7.34□□□□□ -1.23
SIX4-202ENST00000554079 ERCC8Q13216 396 aa7.34□□□□□ -1.23
SIX4-202ENST00000554079 TMEM167AQ8TBQ9 72 aa7.34□□□□□ -1.23
SIX4-202ENST00000554079 SMCR5Q8TEV8 140 aa7.34□□□□□ -1.23
SIX4-202ENST00000554079 CFHR4Q92496 578 aa7.34□□□□□ -1.23
SIX4-202ENST00000554079 RPUSD1Q9UJJ7 312 aaKnown RBP7.34□□□□□ -1.23
SIX4-202ENST00000554079 LYZP61626 148 aa7.34□□□□□ -1.24
SIX4-202ENST00000554079 HIST1H4AP62805 103 aaKnown RBP7.34□□□□□ -1.24
SIX4-202ENST00000554079 IL17RELQ6ZVW7 336 aa7.34□□□□□ -1.24
SIX4-202ENST00000554079 TOMM6Q96B49 74 aa7.34□□□□□ -1.24
SIX4-202ENST00000554079 AMELXQ99217 191 aa7.34□□□□□ -1.24
SIX4-202ENST00000554079 TRBV30A0A0K0K1B3 111 aa7.33□□□□□ -1.24
SIX4-202ENST00000554079 C17orf100A8MU93 164 aa7.33□□□□□ -1.24
SIX4-202ENST00000554079 K7ENP7 123 aa7.33□□□□□ -1.24
SIX4-202ENST00000554079 MALP21145 153 aa7.33□□□□□ -1.24
SIX4-202ENST00000554079 DLX6P56179 175 aa7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms