RNA–Protein interactions for RNA: ENST00000553280.1

SCFD1-209, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 574 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-209ENST00000553280 DNAJB13P59910 316 aa1.5□□□□□ -2.17
SCFD1-209ENST00000553280 SPATA45Q537H7 98 aa1.5□□□□□ -2.17
SCFD1-209ENST00000553280 TMEM244Q5VVB8 128 aa1.5□□□□□ -2.17
SCFD1-209ENST00000553280 OR4S1Q8NGB4 309 aa1.5□□□□□ -2.17
SCFD1-209ENST00000553280 MAGOHBQ96A72 148 aaKnown RBP1.5□□□□□ -2.17
SCFD1-209ENST00000553280 LPAR5Q9H1C0 372 aa1.5□□□□□ -2.17
SCFD1-209ENST00000553280 FLG2Q5D862 2391 aaPredicted RBP1.5□□□□□ -2.17
SCFD1-209ENST00000553280 WDR97A6NE52 1622 aa1.49□□□□□ -2.17
SCFD1-209ENST00000553280 LOC107984156A0A0G2JMH3 177 aa1.49□□□□□ -2.17
SCFD1-209ENST00000553280 PNMA8CA0A1B0GUJ8 204 aa1.49□□□□□ -2.17
SCFD1-209ENST00000553280 NCR3O14931 201 aa1.49□□□□□ -2.17
SCFD1-209ENST00000553280 EDF1O60869 148 aaKnown RBP1.49□□□□□ -2.17
SCFD1-209ENST00000553280 ARL17AQ8IVW1 177 aa1.49□□□□□ -2.17
SCFD1-209ENST00000553280 C5orf17Q8NAS9 161 aa1.49□□□□□ -2.17
SCFD1-209ENST00000553280 OTOSQ8NHW6 89 aa1.49□□□□□ -2.17
SCFD1-209ENST00000553280 BANF2Q9H503 90 aa1.49□□□□□ -2.17
SCFD1-209ENST00000553280 KDM5CP41229 1560 aa1.49□□□□□ -2.17
SCFD1-209ENST00000553280 ARHGAP31Q2M1Z3 1444 aa1.49□□□□□ -2.17
SCFD1-209ENST00000553280 TRAV23DV6A0A075B6W5 121 aa1.48□□□□□ -2.17
SCFD1-209ENST00000553280 SULT1C4O75897 302 aa1.48□□□□□ -2.17
SCFD1-209ENST00000553280 HIST1H1BP16401 226 aaKnown RBP1.48□□□□□ -2.17
SCFD1-209ENST00000553280 CKS2P33552 79 aa1.48□□□□□ -2.17
SCFD1-209ENST00000553280 SBSPONQ8IVN8 264 aa1.48□□□□□ -2.17
SCFD1-209ENST00000553280 TCTEX1D1Q8N7M0 179 aa1.48□□□□□ -2.17
SCFD1-209ENST00000553280 MAFIPQ8WZ33 124 aa1.48□□□□□ -2.17
SCFD1-209ENST00000553280 LZICQ8WZA0 190 aa1.48□□□□□ -2.17
SCFD1-209ENST00000553280 METTL1Q9UBP6 276 aaKnown RBP1.48□□□□□ -2.17
SCFD1-209ENST00000553280 DLG5Q8TDM6 1919 aa1.48□□□□□ -2.17
SCFD1-209ENST00000553280 CEP152O94986 1710 aa1.47□□□□□ -2.17
SCFD1-209ENST00000553280 BBIP1A8MTZ0 92 aa1.47□□□□□ -2.17
SCFD1-209ENST00000553280 ZNF727A8MUV8 499 aa1.47□□□□□ -2.17
SCFD1-209ENST00000553280 CD14P08571 375 aa1.47□□□□□ -2.17
SCFD1-209ENST00000553280 PDE6GP18545 87 aa1.47□□□□□ -2.17
SCFD1-209ENST00000553280 EFNA4P52798 201 aa1.47□□□□□ -2.17
SCFD1-209ENST00000553280 CKS1BP61024 79 aa1.47□□□□□ -2.17
SCFD1-209ENST00000553280 PCBD1P61457 104 aa1.47□□□□□ -2.17
SCFD1-209ENST00000553280 SNRPD3P62318 126 aaKnown RBP1.47□□□□□ -2.17
SCFD1-209ENST00000553280 TMEM91Q6ZNR0 172 aa1.47□□□□□ -2.17
SCFD1-209ENST00000553280 SMIM7Q9BQ49 75 aa1.47□□□□□ -2.17
SCFD1-209ENST00000553280 PTPRFP10586 1907 aa1.46□□□□□ -2.18
SCFD1-209ENST00000553280 SMIM24O75264 130 aa1.46□□□□□ -2.18
SCFD1-209ENST00000553280 IGKV2D-29A0A075B6S2 120 aaPredicted RBP1.45□□□□□ -2.18
SCFD1-209ENST00000553280 HLA-DRB4P13762 266 aa1.45□□□□□ -2.18
SCFD1-209ENST00000553280 OCIAD2Q56VL3 154 aa1.45□□□□□ -2.18
SCFD1-209ENST00000553280 OR10AC1Q8NH08 325 aa1.45□□□□□ -2.18
SCFD1-209ENST00000553280 HLA-DRB4X5D2U9 266 aa1.45□□□□□ -2.18
SCFD1-209ENST00000553280 KIAA1549LQ6ZVL6 1849 aa1.45□□□□□ -2.18
SCFD1-209ENST00000553280 IGHV1-24A0A0C4DH33 117 aa1.44□□□□□ -2.18
SCFD1-209ENST00000553280 A0A1W2PPB8 328 aa1.44□□□□□ -2.18
SCFD1-209ENST00000553280 A0A1W2PRS3 328 aa1.44□□□□□ -2.18
SCFD1-209ENST00000553280 A6NN06 94 aa1.44□□□□□ -2.18
SCFD1-209ENST00000553280 KIR3DP1A8MWS1 328 aa1.44□□□□□ -2.18
SCFD1-209ENST00000553280 IGHV3-30P01768 117 aa1.44□□□□□ -2.18
SCFD1-209ENST00000553280 CD3DP04234 171 aa1.44□□□□□ -2.18
SCFD1-209ENST00000553280 IGHV3-30-5P0DP03 117 aa1.44□□□□□ -2.18
SCFD1-209ENST00000553280 KDELR1P24390 212 aa1.44□□□□□ -2.18
SCFD1-209ENST00000553280 AKR1D1P51857 326 aa1.44□□□□□ -2.18
SCFD1-209ENST00000553280 SMCO1Q147U7 214 aa1.44□□□□□ -2.18
SCFD1-209ENST00000553280 LINC00575Q6W349 94 aa1.44□□□□□ -2.18
SCFD1-209ENST00000553280 C3orf62Q6ZUJ4 267 aa1.44□□□□□ -2.18
SCFD1-209ENST00000553280 OR8J3Q8NGG0 315 aa1.44□□□□□ -2.18
SCFD1-209ENST00000553280 SLC35B3Q9H1N7 401 aa1.44□□□□□ -2.18
SCFD1-209ENST00000553280 BOKQ9UMX3 212 aaPredicted RBP1.44□□□□□ -2.18
SCFD1-209ENST00000553280 DNAJC15Q9Y5T4 150 aa1.44□□□□□ -2.18
SCFD1-209ENST00000553280 SIPA1L2Q9P2F8 1722 aaPredicted RBP1.43□□□□□ -2.18
SCFD1-209ENST00000553280 OVOS2A0A0J9YW53 1432 aa1.43□□□□□ -2.18
SCFD1-209ENST00000553280 OVOS2Q6IE36 1432 aa1.43□□□□□ -2.18
SCFD1-209ENST00000553280 ROS1P08922 2347 aa1.43□□□□□ -2.18
SCFD1-209ENST00000553280 RPL37AP61513 92 aaKnown RBP1.43□□□□□ -2.18
SCFD1-209ENST00000553280 C10orf111Q8N326 155 aa1.43□□□□□ -2.18
SCFD1-209ENST00000553280 MYO18AQ92614 2054 aaKnown RBP1.43□□□□□ -2.18
SCFD1-209ENST00000553280 PTPRGP23470 1445 aa1.42□□□□□ -2.18
SCFD1-209ENST00000553280 CDC42EP2O14613 210 aa1.42□□□□□ -2.18
SCFD1-209ENST00000553280 PLGLB1Q02325 96 aa1.42□□□□□ -2.18
SCFD1-209ENST00000553280 HIST1H1AQ02539 215 aaPredicted RBP1.42□□□□□ -2.18
SCFD1-209ENST00000553280 CSAG1Q6PB30 78 aa1.42□□□□□ -2.18
SCFD1-209ENST00000553280 COMMD3Q9UBI1 195 aa1.42□□□□□ -2.18
SCFD1-209ENST00000553280 NCOA6Q14686 2063 aaPredicted RBP1.42□□□□□ -2.18
SCFD1-209ENST00000553280 MUC4Q99102 2169 aa1.42□□□□□ -2.18
SCFD1-209ENST00000553280 CASP8AP2Q9UKL3 1982 aa1.41□□□□□ -2.18
SCFD1-209ENST00000553280 KMT2BQ9UMN6 2715 aaPredicted RBP1.41□□□□□ -2.18
SCFD1-209ENST00000553280 GYPBP06028 91 aa1.41□□□□□ -2.18
SCFD1-209ENST00000553280 MPC1LP0DKB6 136 aa1.41□□□□□ -2.18
SCFD1-209ENST00000553280 ADCYAP1P18509 176 aa1.41□□□□□ -2.18
SCFD1-209ENST00000553280 SMIM21Q3B7S5 101 aa1.41□□□□□ -2.18
SCFD1-209ENST00000553280 IDO2Q6ZQW0 420 aa1.41□□□□□ -2.18
SCFD1-209ENST00000553280 FCGBPQ9Y6R7 5405 aaPredicted RBP1.4□□□□□ -2.18
SCFD1-209ENST00000553280 NUPR2A6NF83 97 aa1.4□□□□□ -2.19
SCFD1-209ENST00000553280 EVI2AP22794 236 aa1.4□□□□□ -2.19
SCFD1-209ENST00000553280 FXYD4P59646 89 aa1.4□□□□□ -2.19
SCFD1-209ENST00000553280 ARPC4P59998 168 aa1.4□□□□□ -2.19
SCFD1-209ENST00000553280 TET1Q8NFU7 2136 aa1.4□□□□□ -2.19
SCFD1-209ENST00000553280 ZFC3H1O60293 1989 aaKnown RBP1.39□□□□□ -2.19
SCFD1-209ENST00000553280 TANC2Q9HCD6 1990 aa1.39□□□□□ -2.19
SCFD1-209ENST00000553280 IGF2P01344 180 aa1.39□□□□□ -2.19
SCFD1-209ENST00000553280 S100A12P80511 92 aa1.39□□□□□ -2.19
SCFD1-209ENST00000553280 GLYATL3Q5SZD4 288 aa1.39□□□□□ -2.19
SCFD1-209ENST00000553280 MMGT1Q8N4V1 131 aa1.39□□□□□ -2.19
SCFD1-209ENST00000553280 SMIM3Q9BZL3 60 aa1.39□□□□□ -2.19
SCFD1-209ENST00000553280 COPZ2Q9P299 210 aa1.39□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms