RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 FMC1Q96HJ9 113 aa6□□□□□ -1.45
LIMA1-216ENST00000552909 IFI27L2Q9H2X8 130 aa6□□□□□ -1.45
LIMA1-216ENST00000552909 HIGD1BQ9P298 99 aa6□□□□□ -1.45
LIMA1-216ENST00000552909 PRNDQ9UKY0 176 aa6□□□□□ -1.45
LIMA1-216ENST00000552909 OR11H12B2RN74 326 aa5.99□□□□□ -1.45
LIMA1-216ENST00000552909 E9PLD3 99 aa5.99□□□□□ -1.45
LIMA1-216ENST00000552909 SLC25A17O43808 307 aa5.99□□□□□ -1.45
LIMA1-216ENST00000552909 LTAP01374 205 aa5.99□□□□□ -1.45
LIMA1-216ENST00000552909 ATP5G2Q06055 141 aa5.99□□□□□ -1.45
LIMA1-216ENST00000552909 CD69Q07108 199 aa5.99□□□□□ -1.45
LIMA1-216ENST00000552909 C2orf83Q53S99 150 aa5.99□□□□□ -1.45
LIMA1-216ENST00000552909 HCP5Q6MZN7 132 aa5.99□□□□□ -1.45
LIMA1-216ENST00000552909 C9orf139Q6ZV77 190 aa5.99□□□□□ -1.45
LIMA1-216ENST00000552909 TTC9CQ8N5M4 171 aa5.99□□□□□ -1.45
LIMA1-216ENST00000552909 OR11H1Q8NG94 326 aa5.99□□□□□ -1.45
LIMA1-216ENST00000552909 OR11H2Q8NH07 326 aa5.99□□□□□ -1.45
LIMA1-216ENST00000552909 ZNF502Q8TBZ5 544 aa5.99□□□□□ -1.45
LIMA1-216ENST00000552909 PHLDA1Q8WV24 401 aaPredicted RBP5.99□□□□□ -1.45
LIMA1-216ENST00000552909 ZNF414Q96IQ9 312 aa5.99□□□□□ -1.45
LIMA1-216ENST00000552909 C18orf15Q96N68 181 aa5.99□□□□□ -1.45
LIMA1-216ENST00000552909 A0A096LNJ9 63 aa5.99□□□□□ -1.45
LIMA1-216ENST00000552909 IGHV1-69DA0A0B4J2H0 117 aa5.99□□□□□ -1.45
LIMA1-216ENST00000552909 A0A1B0GUT8 65 aa5.99□□□□□ -1.45
LIMA1-216ENST00000552909 TCRBV4S1A1TA0A5B7 111 aa5.99□□□□□ -1.45
LIMA1-216ENST00000552909 PGPA6NDG6 321 aa5.99□□□□□ -1.45
LIMA1-216ENST00000552909 IGHV1-69P01742 117 aa5.99□□□□□ -1.45
LIMA1-216ENST00000552909 DLX6P56179 175 aa5.99□□□□□ -1.45
LIMA1-216ENST00000552909 RIGQ13278 110 aa5.99□□□□□ -1.45
LIMA1-216ENST00000552909 MLANAQ16655 118 aa5.99□□□□□ -1.45
LIMA1-216ENST00000552909 TMEM95Q3KNT9 176 aa5.99□□□□□ -1.45
LIMA1-216ENST00000552909 GAGE13Q4V321 117 aa5.99□□□□□ -1.45
LIMA1-216ENST00000552909 PSMG4Q5JS54 123 aa5.99□□□□□ -1.45
LIMA1-216ENST00000552909 C8orf86Q6ZUL3 223 aa5.99□□□□□ -1.45
LIMA1-216ENST00000552909 TMEM158Q8WZ71 300 aa5.99□□□□□ -1.45
LIMA1-216ENST00000552909 CHAC1Q9BUX1 264 aa5.99□□□□□ -1.45
LIMA1-216ENST00000552909 NHP2Q9NX24 153 aaKnown RBP5.99□□□□□ -1.45
LIMA1-216ENST00000552909 ZNRD1Q9P1U0 126 aa5.99□□□□□ -1.45
LIMA1-216ENST00000552909 CYSLTR1Q9Y271 337 aa5.99□□□□□ -1.45
LIMA1-216ENST00000552909 NPIPB6E9PJ23 425 aa5.98□□□□□ -1.45
LIMA1-216ENST00000552909 H3BMG7 143 aa5.98□□□□□ -1.45
LIMA1-216ENST00000552909 FAM106CPP0CH98 169 aa5.98□□□□□ -1.45
LIMA1-216ENST00000552909 PRTN3P24158 256 aa5.98□□□□□ -1.45
LIMA1-216ENST00000552909 IFI27P40305 119 aaPredicted RBP5.98□□□□□ -1.45
LIMA1-216ENST00000552909 FAM106AQ4KMX7 169 aa5.98□□□□□ -1.45
LIMA1-216ENST00000552909 C1orf122Q6ZSJ8 110 aa5.98□□□□□ -1.45
LIMA1-216ENST00000552909 SLC25A48Q6ZT89 311 aaKnown RBP5.98□□□□□ -1.45
LIMA1-216ENST00000552909 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP5.98□□□□□ -1.45
LIMA1-216ENST00000552909 OR1L8Q8NGR8 309 aa5.98□□□□□ -1.45
LIMA1-216ENST00000552909 CACNG8Q8WXS5 425 aa5.98□□□□□ -1.45
LIMA1-216ENST00000552909 ZNF479Q96JC4 524 aa5.98□□□□□ -1.45
LIMA1-216ENST00000552909 PKD1L1Q8TDX9 2849 aa5.98□□□□□ -1.45
LIMA1-216ENST00000552909 A0A1B0GW15 77 aa5.97□□□□□ -1.45
LIMA1-216ENST00000552909 DNAJC9-AS1A6NH13 148 aa5.97□□□□□ -1.45
LIMA1-216ENST00000552909 IGLL5B9A064 214 aa5.97□□□□□ -1.45
LIMA1-216ENST00000552909 M0R1W7 72 aa5.97□□□□□ -1.45
LIMA1-216ENST00000552909 HBDP02042 147 aa5.97□□□□□ -1.45
LIMA1-216ENST00000552909 SPINK8P0C7L1 97 aa5.97□□□□□ -1.45
LIMA1-216ENST00000552909 IGHV1-8P0DP01 117 aa5.97□□□□□ -1.45
LIMA1-216ENST00000552909 RNASE2P10153 161 aaKnown RBP5.97□□□□□ -1.45
LIMA1-216ENST00000552909 TMEM30BQ3MIR4 351 aa5.97□□□□□ -1.45
LIMA1-216ENST00000552909 GATD1Q8NB37 220 aa5.97□□□□□ -1.45
LIMA1-216ENST00000552909 IFI27L1Q96BM0 104 aa5.97□□□□□ -1.45
LIMA1-216ENST00000552909 LOC389332A0A1B0GUA5 103 aa5.97□□□□□ -1.45
LIMA1-216ENST00000552909 HOXA3O43365 443 aaPredicted RBP5.97□□□□□ -1.45
LIMA1-216ENST00000552909 ARMS2P0C7Q2 107 aa5.97□□□□□ -1.45
LIMA1-216ENST00000552909 SAA4P35542 130 aa5.97□□□□□ -1.45
LIMA1-216ENST00000552909 INSL3P51460 131 aa5.97□□□□□ -1.45
LIMA1-216ENST00000552909 POU2AF1Q16633 256 aa5.97□□□□□ -1.45
LIMA1-216ENST00000552909 PATE2Q6UY27 113 aa5.97□□□□□ -1.45
LIMA1-216ENST00000552909 LINC00305Q7Z4B0 112 aa5.97□□□□□ -1.45
LIMA1-216ENST00000552909 CEND1Q8N111 149 aa5.97□□□□□ -1.45
LIMA1-216ENST00000552909 PIFOQ8TCI5 191 aa5.97□□□□□ -1.45
LIMA1-216ENST00000552909 AJUBAQ96IF1 538 aa5.97□□□□□ -1.45
LIMA1-216ENST00000552909 TM2D2Q9BX73 214 aa5.97□□□□□ -1.45
LIMA1-216ENST00000552909 SS18L2Q9UHA2 77 aa5.97□□□□□ -1.45
LIMA1-216ENST00000552909 ERG28Q9UKR5 140 aa5.97□□□□□ -1.45
LIMA1-216ENST00000552909 PSG8Q9UQ74 426 aa5.97□□□□□ -1.45
LIMA1-216ENST00000552909 UPK2O00526 184 aa5.96□□□□□ -1.46
LIMA1-216ENST00000552909 NPFFO15130 113 aa5.96□□□□□ -1.46
LIMA1-216ENST00000552909 APOMO95445 188 aa5.96□□□□□ -1.46
LIMA1-216ENST00000552909 TCRAP04437 139 aa5.96□□□□□ -1.46
LIMA1-216ENST00000552909 SAA2P0DJI9 122 aaPredicted RBP5.96□□□□□ -1.46
LIMA1-216ENST00000552909 COX7A1P24310 79 aa5.96□□□□□ -1.46
LIMA1-216ENST00000552909 UBE2E1P51965 193 aa5.96□□□□□ -1.46
LIMA1-216ENST00000552909 Q6YL49 198 aa5.96□□□□□ -1.46
LIMA1-216ENST00000552909 SYT8Q8NBV8 401 aa5.96□□□□□ -1.46
LIMA1-216ENST00000552909 OR10X1Q8NGY0 326 aa5.96□□□□□ -1.46
LIMA1-216ENST00000552909 C20orf78Q9BR46 151 aa5.96□□□□□ -1.46
LIMA1-216ENST00000552909 TMEM133Q9H2Q1 129 aa5.96□□□□□ -1.46
LIMA1-216ENST00000552909 PGPEP1Q9NXJ5 209 aa5.96□□□□□ -1.46
LIMA1-216ENST00000552909 A0A1B0GWB2 263 aa5.96□□□□□ -1.46
LIMA1-216ENST00000552909 IGHV4-59P01825 116 aa5.96□□□□□ -1.46
LIMA1-216ENST00000552909 SSBP2P81877 361 aaPredicted RBP5.96□□□□□ -1.46
LIMA1-216ENST00000552909 Q86TA4 180 aa5.96□□□□□ -1.46
LIMA1-216ENST00000552909 ZNF436-AS1Q8NC38 126 aaPredicted RBP5.96□□□□□ -1.46
LIMA1-216ENST00000552909 DKK2Q9UBU2 259 aa5.96□□□□□ -1.46
LIMA1-216ENST00000552909 VWFP04275 2813 aa5.95□□□□□ -1.46
LIMA1-216ENST00000552909 D6R8Y8 96 aa5.95□□□□□ -1.46
LIMA1-216ENST00000552909 FOXI1Q12951 378 aa5.95□□□□□ -1.46
LIMA1-216ENST00000552909 AMTNQ6UX39 209 aa5.95□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 90.3 ms