RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 RAB2AP61019 212 aa8.73□□□□□ -1.01
USP28-212ENST00000544750 EXOC3-AS1Q8N2X6 119 aa8.73□□□□□ -1.01
USP28-212ENST00000544750 MRPL53Q96EL3 112 aaKnown RBP8.73□□□□□ -1.01
USP28-212ENST00000544750 PHYHIPLQ96FC7 376 aa8.73□□□□□ -1.01
USP28-212ENST00000544750 PAXXQ9BUH6 204 aa8.73□□□□□ -1.01
USP28-212ENST00000544750 TMPRSS5Q9H3S3 457 aa8.73□□□□□ -1.01
USP28-212ENST00000544750 NPIPB6E9PJ23 425 aa8.72□□□□□ -1.01
USP28-212ENST00000544750 NBEAP1P0C6P0 100 aa8.72□□□□□ -1.01
USP28-212ENST00000544750 ZNF266Q14584 549 aa8.72□□□□□ -1.01
USP28-212ENST00000544750 GFI1BQ5VTD9 330 aa8.72□□□□□ -1.01
USP28-212ENST00000544750 Q6ZTI0 123 aa8.72□□□□□ -1.01
USP28-212ENST00000544750 HSD17B11Q8NBQ5 300 aa8.72□□□□□ -1.01
USP28-212ENST00000544750 OR2G3Q8NGZ4 309 aa8.72□□□□□ -1.01
USP28-212ENST00000544750 PPP1R14DQ9NXH3 145 aa8.72□□□□□ -1.01
USP28-212ENST00000544750 UBR4Q5T4S7 5183 aa8.72□□□□□ -1.01
USP28-212ENST00000544750 LRP1Q07954 4544 aaKnown RBP8.72□□□□□ -1.01
USP28-212ENST00000544750 SMLR1H3BR10 107 aa8.71□□□□□ -1.02
USP28-212ENST00000544750 OR7C2O60412 319 aa8.71□□□□□ -1.02
USP28-212ENST00000544750 NXPH4O95158 308 aa8.71□□□□□ -1.02
USP28-212ENST00000544750 CT45A10P0DMU9 189 aa8.71□□□□□ -1.02
USP28-212ENST00000544750 ATP6V0CP27449 155 aa8.71□□□□□ -1.02
USP28-212ENST00000544750 DAZ2Q13117 558 aaKnown RBP8.71□□□□□ -1.02
USP28-212ENST00000544750 KHDC3LQ587J8 217 aa8.71□□□□□ -1.02
USP28-212ENST00000544750 Q6ZSN1 163 aa8.71□□□□□ -1.02
USP28-212ENST00000544750 PSMG3Q9BT73 122 aaPredicted RBP8.71□□□□□ -1.02
USP28-212ENST00000544750 SH3BGRL3Q9H299 93 aa8.71□□□□□ -1.02
USP28-212ENST00000544750 PRELID1Q9Y255 219 aa8.71□□□□□ -1.02
USP28-212ENST00000544750 SNURFLB1AK76 121 aa8.7□□□□□ -1.02
USP28-212ENST00000544750 FAM229AH3BQW9 127 aa8.7□□□□□ -1.02
USP28-212ENST00000544750 UBE2L3P68036 154 aaKnown RBP8.7□□□□□ -1.02
USP28-212ENST00000544750 ERCC8Q13216 396 aa8.7□□□□□ -1.02
USP28-212ENST00000544750 ACOT6Q3I5F7 207 aaPredicted RBP8.7□□□□□ -1.02
USP28-212ENST00000544750 RPL7L1Q6DKI1 246 aaKnown RBP8.7□□□□□ -1.02
USP28-212ENST00000544750 NFE4Q86UQ8 179 aa8.7□□□□□ -1.02
USP28-212ENST00000544750 CCDC28AQ8IWP9 274 aa8.7□□□□□ -1.02
USP28-212ENST00000544750 INO80EQ8NBZ0 244 aaPredicted RBP8.7□□□□□ -1.02
USP28-212ENST00000544750 FAM19A4Q96LR4 140 aa8.7□□□□□ -1.02
USP28-212ENST00000544750 ODF3Q96PU9 254 aa8.7□□□□□ -1.02
USP28-212ENST00000544750 FAT3Q8TDW7 4589 aa8.7□□□□□ -1.02
USP28-212ENST00000544750 IGKV2-40A0A087WW87 121 aaPredicted RBP8.69□□□□□ -1.02
USP28-212ENST00000544750 J3QL48 77 aa8.69□□□□□ -1.02
USP28-212ENST00000544750 IGKV2D-40P01614 121 aaPredicted RBP8.69□□□□□ -1.02
USP28-212ENST00000544750 GCSHP23434 173 aa8.69□□□□□ -1.02
USP28-212ENST00000544750 TAS2R45P59539 299 aa8.69□□□□□ -1.02
USP28-212ENST00000544750 HAMPP81172 84 aa8.69□□□□□ -1.02
USP28-212ENST00000544750 FAM122CQ6P4D5 195 aa8.69□□□□□ -1.02
USP28-212ENST00000544750 OR10G4Q8NGN3 311 aa8.69□□□□□ -1.02
USP28-212ENST00000544750 OR10G9Q8NGN4 311 aa8.69□□□□□ -1.02
USP28-212ENST00000544750 OR10G7Q8NGN6 311 aa8.69□□□□□ -1.02
USP28-212ENST00000544750 AGPAT4-IT1Q9H0P7 198 aa8.69□□□□□ -1.02
USP28-212ENST00000544750 AAMDCQ9H7C9 122 aa8.69□□□□□ -1.02
USP28-212ENST00000544750 HMGB3O15347 200 aaKnown RBP8.68□□□□□ -1.02
USP28-212ENST00000544750 ARPC5O15511 151 aa8.68□□□□□ -1.02
USP28-212ENST00000544750 PQLC2Q6ZP29 291 aa8.68□□□□□ -1.02
USP28-212ENST00000544750 C9orf47Q6ZRZ4 202 aa8.68□□□□□ -1.02
USP28-212ENST00000544750 C11orf72Q8NBR9 251 aa8.68□□□□□ -1.02
USP28-212ENST00000544750 OR11H4Q8NGC9 324 aa8.68□□□□□ -1.02
USP28-212ENST00000544750 VGLL1Q99990 258 aa8.68□□□□□ -1.02
USP28-212ENST00000544750 CYTL1Q9NRR1 136 aa8.68□□□□□ -1.02
USP28-212ENST00000544750 A0A1W2PPV4 95 aa8.67□□□□□ -1.02
USP28-212ENST00000544750 KRTAP29-1A8MX34 341 aaPredicted RBP8.67□□□□□ -1.02
USP28-212ENST00000544750 KLLNB2CW77 178 aa8.67□□□□□ -1.02
USP28-212ENST00000544750 ZNF324O75467 553 aaPredicted RBP8.67□□□□□ -1.02
USP28-212ENST00000544750 ARL14EPLP0DKL9 152 aa8.67□□□□□ -1.02
USP28-212ENST00000544750 CDC34P49427 236 aaPredicted RBP8.67□□□□□ -1.02
USP28-212ENST00000544750 RANP62826 216 aaKnown RBP8.67□□□□□ -1.02
USP28-212ENST00000544750 SERF2P84101 59 aa8.67□□□□□ -1.02
USP28-212ENST00000544750 PYGO2Q9BRQ0 406 aa8.67□□□□□ -1.02
USP28-212ENST00000544750 TMEM70Q9BUB7 260 aa8.67□□□□□ -1.02
USP28-212ENST00000544750 BORCS7-ASMTA0A0B4J1R7 106 aa8.66□□□□□ -1.02
USP28-212ENST00000544750 TRAV12-3A0A0B4J271 114 aa8.66□□□□□ -1.02
USP28-212ENST00000544750 J3KRW8 73 aa8.66□□□□□ -1.02
USP28-212ENST00000544750 STAG3L2P0CL84 134 aa8.66□□□□□ -1.02
USP28-212ENST00000544750 STAG3L3P0CL85 134 aa8.66□□□□□ -1.02
USP28-212ENST00000544750 CRISP2P16562 243 aa8.66□□□□□ -1.02
USP28-212ENST00000544750 LEPP41159 167 aa8.66□□□□□ -1.02
USP28-212ENST00000544750 PRR9Q5T870 116 aa8.66□□□□□ -1.02
USP28-212ENST00000544750 LYPD5Q6UWN5 251 aa8.66□□□□□ -1.02
USP28-212ENST00000544750 ZFAND2AQ8N6M9 145 aa8.66□□□□□ -1.02
USP28-212ENST00000544750 SUN5Q8TC36 379 aa8.66□□□□□ -1.02
USP28-212ENST00000544750 RAB24Q969Q5 203 aa8.66□□□□□ -1.02
USP28-212ENST00000544750 LINC00477Q96M19 166 aa8.66□□□□□ -1.02
USP28-212ENST00000544750 ICOSQ9Y6W8 199 aa8.66□□□□□ -1.02
USP28-212ENST00000544750 TRGV2A0A075B6R0 118 aa8.65□□□□□ -1.02
USP28-212ENST00000544750 DIRC3C9JPN6 131 aa8.65□□□□□ -1.02
USP28-212ENST00000544750 CD300CQ08708 224 aa8.65□□□□□ -1.02
USP28-212ENST00000544750 BTN1A1Q13410 526 aa8.65□□□□□ -1.02
USP28-212ENST00000544750 ZNF345Q14585 488 aa8.65□□□□□ -1.02
USP28-212ENST00000544750 ZNF726P1Q15940 193 aa8.65□□□□□ -1.02
USP28-212ENST00000544750 Q8TAT8 98 aa8.65□□□□□ -1.02
USP28-212ENST00000544750 LINC00467Q9BRT7 94 aa8.65□□□□□ -1.02
USP28-212ENST00000544750 GSN-AS1Q9NRJ2 163 aa8.65□□□□□ -1.02
USP28-212ENST00000544750 ZNF492Q9P255 531 aa8.65□□□□□ -1.02
USP28-212ENST00000544750 C7orf71A4D174 169 aa8.64□□□□□ -1.03
USP28-212ENST00000544750 RBAKDNA6NC62 111 aa8.64□□□□□ -1.03
USP28-212ENST00000544750 K7EP13 123 aa8.64□□□□□ -1.03
USP28-212ENST00000544750 TAAR5O14804 337 aa8.64□□□□□ -1.03
USP28-212ENST00000544750 PAX4O43316 350 aa8.64□□□□□ -1.03
USP28-212ENST00000544750 SPINK4O60575 86 aa8.64□□□□□ -1.03
USP28-212ENST00000544750 MBP02144 154 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms