RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 PRSS3P2Q8NHM4 247 aa6.93□□□□□ -1.3
VPS13D-212ENST00000543766 TIMM9Q9Y5J7 89 aa6.93□□□□□ -1.3
VPS13D-212ENST00000543766 TRBV20OR9-2A0A075B6H5 130 aa6.93□□□□□ -1.3
VPS13D-212ENST00000543766 Q6ZPA2 131 aa6.93□□□□□ -1.3
VPS13D-212ENST00000543766 ZNF706Q9Y5V0 76 aaPredicted RBP6.93□□□□□ -1.3
VPS13D-212ENST00000543766 SPTBN4Q9H254 2564 aa6.93□□□□□ -1.3
VPS13D-212ENST00000543766 ZNF837Q96EG3 531 aaPredicted RBP6.93□□□□□ -1.3
VPS13D-212ENST00000543766 COL5A1P20908 1838 aaPredicted RBP6.93□□□□□ -1.3
VPS13D-212ENST00000543766 ZNF137PP52743 207 aa6.92□□□□□ -1.3
VPS13D-212ENST00000543766 PROK2Q9HC23 129 aa6.92□□□□□ -1.3
VPS13D-212ENST00000543766 AGRNO00468 2067 aa6.92□□□□□ -1.3
VPS13D-212ENST00000543766 EML6Q6ZMW3 1958 aa6.92□□□□□ -1.3
VPS13D-212ENST00000543766 CCL8P80075 99 aa6.92□□□□□ -1.3
VPS13D-212ENST00000543766 Q9H8V8 135 aa6.92□□□□□ -1.3
VPS13D-212ENST00000543766 LAMTOR3Q9UHA4 124 aa6.92□□□□□ -1.3
VPS13D-212ENST00000543766 DSCAML1Q8TD84 2053 aa6.92□□□□□ -1.3
VPS13D-212ENST00000543766 GHRHP01286 108 aa6.92□□□□□ -1.3
VPS13D-212ENST00000543766 Q96M66 194 aa6.92□□□□□ -1.3
VPS13D-212ENST00000543766 GFRA3O60609 400 aa6.91□□□□□ -1.3
VPS13D-212ENST00000543766 GNB1P62873 340 aa6.91□□□□□ -1.3
VPS13D-212ENST00000543766 C2orf82Q6UX34 121 aa6.91□□□□□ -1.3
VPS13D-212ENST00000543766 FAM57BQ71RH2 274 aa6.91□□□□□ -1.3
VPS13D-212ENST00000543766 FLVCR1-AS1Q8TAF5 88 aa6.91□□□□□ -1.3
VPS13D-212ENST00000543766 DEC1Q9P2X7 70 aa6.91□□□□□ -1.3
VPS13D-212ENST00000543766 MYMXA0A1B0GTQ4 84 aa6.91□□□□□ -1.3
VPS13D-212ENST00000543766 ZNF22P17026 224 aaPredicted RBP6.91□□□□□ -1.3
VPS13D-212ENST00000543766 TAF15Q92804 592 aaKnown RBP eCLIP6.91□□□□□ -1.3
VPS13D-212ENST00000543766 SLC50A1Q9BRV3 221 aa6.91□□□□□ -1.3
VPS13D-212ENST00000543766 SPANXDQ9BXN6 97 aa6.91□□□□□ -1.3
VPS13D-212ENST00000543766 IL36RNQ9UBH0 155 aa6.91□□□□□ -1.3
VPS13D-212ENST00000543766 IGHV1OR21-1A0A087WYE8 117 aa6.91□□□□□ -1.3
VPS13D-212ENST00000543766 CD24P25063 80 aa6.91□□□□□ -1.3
VPS13D-212ENST00000543766 PLA2G5P39877 138 aa6.91□□□□□ -1.3
VPS13D-212ENST00000543766 SCGB1D4Q6XE38 83 aa6.91□□□□□ -1.3
VPS13D-212ENST00000543766 SPACA3Q8IXA5 215 aa6.91□□□□□ -1.3
VPS13D-212ENST00000543766 SERP2Q8N6R1 65 aa6.91□□□□□ -1.3
VPS13D-212ENST00000543766 ZNF414Q96IQ9 312 aa6.91□□□□□ -1.3
VPS13D-212ENST00000543766 ZNF318Q5VUA4 2279 aa6.91□□□□□ -1.3
VPS13D-212ENST00000543766 INTS1Q8N201 2190 aaKnown RBP6.91□□□□□ -1.3
VPS13D-212ENST00000543766 CACNA1IQ9P0X4 2223 aa6.91□□□□□ -1.3
VPS13D-212ENST00000543766 F5H697 171 aa6.9□□□□□ -1.3
VPS13D-212ENST00000543766 MORN5Q5VZ52 161 aa6.9□□□□□ -1.3
VPS13D-212ENST00000543766 CNOT1A5YKK6 2376 aaKnown RBP6.9□□□□□ -1.3
VPS13D-212ENST00000543766 PEX7O00628 323 aa6.9□□□□□ -1.3
VPS13D-212ENST00000543766 NPYP01303 97 aa6.9□□□□□ -1.3
VPS13D-212ENST00000543766 RFESDQ8TAC1 157 aa6.9□□□□□ -1.3
VPS13D-212ENST00000543766 SPTSSAQ969W0 71 aa6.9□□□□□ -1.3
VPS13D-212ENST00000543766 IGKV1D-43A0A0B4J1Z2 117 aa6.9□□□□□ -1.31
VPS13D-212ENST00000543766 CTXND1A0A1B0GTU2 59 aa6.9□□□□□ -1.31
VPS13D-212ENST00000543766 MRPS12O15235 138 aaKnown RBP6.9□□□□□ -1.31
VPS13D-212ENST00000543766 CLPSP04118 112 aa6.9□□□□□ -1.31
VPS13D-212ENST00000543766 PRSS1P07477 247 aa6.9□□□□□ -1.31
VPS13D-212ENST00000543766 BEAN1Q3B7T3 259 aa6.9□□□□□ -1.31
VPS13D-212ENST00000543766 GDF5OSQ5U4N7 250 aa6.9□□□□□ -1.31
VPS13D-212ENST00000543766 NCOA6Q14686 2063 aaPredicted RBP6.89□□□□□ -1.31
VPS13D-212ENST00000543766 ARHGEF17Q96PE2 2063 aaPredicted RBP6.89□□□□□ -1.31
VPS13D-212ENST00000543766 TRBV25-1A0A075B6N4 114 aa6.89□□□□□ -1.31
VPS13D-212ENST00000543766 M0R381 172 aa6.89□□□□□ -1.31
VPS13D-212ENST00000543766 COL8A2P25067 703 aa6.89□□□□□ -1.31
VPS13D-212ENST00000543766 C6orf223Q8N319 242 aa6.89□□□□□ -1.31
VPS13D-212ENST00000543766 RPL18AQ02543 176 aaKnown RBP6.89□□□□□ -1.31
VPS13D-212ENST00000543766 PRNTQ86SH4 94 aa6.89□□□□□ -1.31
VPS13D-212ENST00000543766 PHLDA1Q8WV24 401 aaPredicted RBP6.89□□□□□ -1.31
VPS13D-212ENST00000543766 KISS1Q15726 138 aa6.89□□□□□ -1.31
VPS13D-212ENST00000543766 LOC400499M0QZD8 3231 aa6.88□□□□□ -1.31
VPS13D-212ENST00000543766 A0A087WZ39 114 aa6.88□□□□□ -1.31
VPS13D-212ENST00000543766 IQCF6A8MYZ5 107 aa6.88□□□□□ -1.31
VPS13D-212ENST00000543766 C16orf97H3BN30 126 aa6.88□□□□□ -1.31
VPS13D-212ENST00000543766 ZNF73O43830 326 aaPredicted RBP6.88□□□□□ -1.31
VPS13D-212ENST00000543766 NCR2O95944 276 aa6.88□□□□□ -1.31
VPS13D-212ENST00000543766 FUSP35637 526 aaKnown RBP eCLIP6.88□□□□□ -1.31
VPS13D-212ENST00000543766 TWIST1Q15672 202 aa6.88□□□□□ -1.31
VPS13D-212ENST00000543766 ZNF645Q8N7E2 425 aa6.88□□□□□ -1.31
VPS13D-212ENST00000543766 MYOZ3Q8TDC0 251 aa6.88□□□□□ -1.31
VPS13D-212ENST00000543766 A0A0G2JRQ6 117 aa6.88□□□□□ -1.31
VPS13D-212ENST00000543766 LOC389332A0A1B0GUA5 103 aa6.88□□□□□ -1.31
VPS13D-212ENST00000543766 FXYD7P58549 80 aa6.88□□□□□ -1.31
VPS13D-212ENST00000543766 LINC00205P59089 165 aa6.88□□□□□ -1.31
VPS13D-212ENST00000543766 HIST1H4AP62805 103 aaKnown RBP6.88□□□□□ -1.31
VPS13D-212ENST00000543766 Q6ZS49 121 aa6.88□□□□□ -1.31
VPS13D-212ENST00000543766 KTN1-AS1Q86SY8 53 aa6.88□□□□□ -1.31
VPS13D-212ENST00000543766 PSMG3-AS1Q96PY0 264 aa6.88□□□□□ -1.31
VPS13D-212ENST00000543766 FRYQ5TBA9 3013 aa6.88□□□□□ -1.31
VPS13D-212ENST00000543766 IGLV3-21P80748 117 aaPredicted RBP6.88□□□□□ -1.31
VPS13D-212ENST00000543766 DAZAP2Q15038 168 aaPredicted RBP6.88□□□□□ -1.31
VPS13D-212ENST00000543766 FAM120AOSQ5T036 256 aa6.88□□□□□ -1.31
VPS13D-212ENST00000543766 TMEM158Q8WZ71 300 aa6.88□□□□□ -1.31
VPS13D-212ENST00000543766 OVOL2Q9BRP0 275 aa6.88□□□□□ -1.31
VPS13D-212ENST00000543766 PSMB8P28062 276 aa6.87□□□□□ -1.31
VPS13D-212ENST00000543766 DEFB134Q4QY38 66 aa6.87□□□□□ -1.31
VPS13D-212ENST00000543766 LINC01545Q5VT33 79 aa6.87□□□□□ -1.31
VPS13D-212ENST00000543766 FP248Q71RG6 208 aaPredicted RBP6.87□□□□□ -1.31
VPS13D-212ENST00000543766 NPCDR1Q9BY65 106 aa6.87□□□□□ -1.31
VPS13D-212ENST00000543766 A0A1B0GXF2 115 aa6.87□□□□□ -1.31
VPS13D-212ENST00000543766 LYZL4Q96KX0 146 aa6.87□□□□□ -1.31
VPS13D-212ENST00000543766 FAM186AA6NE01 2351 aa6.87□□□□□ -1.31
VPS13D-212ENST00000543766 TRBV7-7A0A0K0K1E9 115 aa6.87□□□□□ -1.31
VPS13D-212ENST00000543766 NDUFS5O43920 106 aa6.87□□□□□ -1.31
VPS13D-212ENST00000543766 PPYP01298 95 aa6.87□□□□□ -1.31
VPS13D-212ENST00000543766 ERCC8Q13216 396 aa6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms