RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 GOLT1BQ9Y3E0 138 aa12.45□□□□□ -0.42
LIG1-204ENST00000542460 TRBV6-1A0A0K0K1D8 114 aa12.44□□□□□ -0.42
LIG1-204ENST00000542460 RNASE4P34096 147 aaKnown RBP12.44□□□□□ -0.42
LIG1-204ENST00000542460 ZNF705AQ6ZN79 300 aaPredicted RBP12.44□□□□□ -0.42
LIG1-204ENST00000542460 C1orf158Q8N1D5 194 aa12.44□□□□□ -0.42
LIG1-204ENST00000542460 TMEM208Q9BTX3 173 aa12.44□□□□□ -0.42
LIG1-204ENST00000542460 C7orf71A4D174 169 aa12.43□□□□□ -0.42
LIG1-204ENST00000542460 Q86TA4 180 aa12.43□□□□□ -0.42
LIG1-204ENST00000542460 TMEM256Q8N2U0 113 aa12.43□□□□□ -0.42
LIG1-204ENST00000542460 OR11H2Q8NH07 326 aa12.43□□□□□ -0.42
LIG1-204ENST00000542460 MED9Q9NWA0 146 aa12.43□□□□□ -0.42
LIG1-204ENST00000542460 ZFP30Q9Y2G7 519 aa12.43□□□□□ -0.42
LIG1-204ENST00000542460 IGHV3OR16-12A0A075B7B8 117 aa12.42□□□□□ -0.42
LIG1-204ENST00000542460 TRAV12-3A0A0B4J271 114 aa12.42□□□□□ -0.42
LIG1-204ENST00000542460 RPL35P42766 123 aaKnown RBP12.42□□□□□ -0.42
LIG1-204ENST00000542460 BTN1A1Q13410 526 aa12.42□□□□□ -0.42
LIG1-204ENST00000542460 PRR9Q5T870 116 aa12.42□□□□□ -0.42
LIG1-204ENST00000542460 NIPSNAP3BQ9BS92 247 aa12.42□□□□□ -0.42
LIG1-204ENST00000542460 TMEM250H0YL14 139 aa12.42□□□□□ -0.42
LIG1-204ENST00000542460 NDUFS6O75380 124 aaKnown RBP12.42□□□□□ -0.42
LIG1-204ENST00000542460 LTAP01374 205 aa12.42□□□□□ -0.42
LIG1-204ENST00000542460 RBMY1A1P0DJD3 496 aaKnown RBP12.42□□□□□ -0.42
LIG1-204ENST00000542460 RBMY1CP0DJD4 496 aa12.42□□□□□ -0.42
LIG1-204ENST00000542460 TAS2R60P59551 318 aa12.42□□□□□ -0.42
LIG1-204ENST00000542460 RBMY1FQ15415 496 aaKnown RBP12.42□□□□□ -0.42
LIG1-204ENST00000542460 LINC01587Q99440 93 aa12.42□□□□□ -0.42
LIG1-204ENST00000542460 H7BYZ3 331 aa12.41□□□□□ -0.42
LIG1-204ENST00000542460 ZNF324O75467 553 aaPredicted RBP12.41□□□□□ -0.42
LIG1-204ENST00000542460 Q6AWC8 147 aa12.41□□□□□ -0.42
LIG1-204ENST00000542460 C8orf49Q96NF6 230 aa12.41□□□□□ -0.42
LIG1-204ENST00000542460 NEU1Q99519 415 aa12.41□□□□□ -0.42
LIG1-204ENST00000542460 DERL1Q9BUN8 251 aa12.41□□□□□ -0.42
LIG1-204ENST00000542460 X6R8D5 127 aa12.41□□□□□ -0.42
LIG1-204ENST00000542460 SMIM9A6NGZ8 99 aa12.4□□□□□ -0.42
LIG1-204ENST00000542460 SMUG1Q53HV7 270 aa12.4□□□□□ -0.42
LIG1-204ENST00000542460 SMDT1Q9H4I9 107 aa12.4□□□□□ -0.42
LIG1-204ENST00000542460 DNAH9Q9NYC9 4486 aa12.39□□□□□ -0.43
LIG1-204ENST00000542460 MIFP14174 115 aa12.39□□□□□ -0.43
LIG1-204ENST00000542460 PEA15Q15121 130 aa12.39□□□□□ -0.43
LIG1-204ENST00000542460 COX8CQ7Z4L0 72 aa12.39□□□□□ -0.43
LIG1-204ENST00000542460 BAGE2Q86Y30 109 aa12.39□□□□□ -0.43
LIG1-204ENST00000542460 TMEM183AQ8IXX5 376 aa12.39□□□□□ -0.43
LIG1-204ENST00000542460 U3KQK5 164 aa12.39□□□□□ -0.43
LIG1-204ENST00000542460 TRAV21A0A0B4J279 112 aa12.38□□□□□ -0.43
LIG1-204ENST00000542460 GCGP01275 180 aa12.38□□□□□ -0.43
LIG1-204ENST00000542460 PYGO2Q9BRQ0 406 aa12.38□□□□□ -0.43
LIG1-204ENST00000542460 SRP19P09132 144 aaKnown RBP12.37□□□□□ -0.43
LIG1-204ENST00000542460 RRN3P1Q2M238 152 aa12.37□□□□□ -0.43
LIG1-204ENST00000542460 RAB19A4D1S5 217 aa12.37□□□□□ -0.43
LIG1-204ENST00000542460 PFN1P07737 140 aaKnown RBP12.37□□□□□ -0.43
LIG1-204ENST00000542460 HTN1P15515 57 aa12.37□□□□□ -0.43
LIG1-204ENST00000542460 GNG4P50150 75 aa12.37□□□□□ -0.43
LIG1-204ENST00000542460 ZNF80P51504 273 aaPredicted RBP12.37□□□□□ -0.43
LIG1-204ENST00000542460 SRSF3P84103 164 aaKnown RBP12.37□□□□□ -0.43
LIG1-204ENST00000542460 COL7A1Q02388 2944 aa12.37□□□□□ -0.43
LIG1-204ENST00000542460 Q6ZQT7 251 aa12.37□□□□□ -0.43
LIG1-204ENST00000542460 ZC2HC1AQ96GY0 325 aa12.37□□□□□ -0.43
LIG1-204ENST00000542460 LINC00467Q9BRT7 94 aa12.37□□□□□ -0.43
LIG1-204ENST00000542460 MLST8Q9BVC4 326 aa12.37□□□□□ -0.43
LIG1-204ENST00000542460 PARLQ9H300 379 aa12.37□□□□□ -0.43
LIG1-204ENST00000542460 ZNF705GA8MUZ8 300 aaPredicted RBP12.36□□□□□ -0.43
LIG1-204ENST00000542460 CEBPGP53567 150 aa12.36□□□□□ -0.43
LIG1-204ENST00000542460 CENPWQ5EE01 88 aa12.36□□□□□ -0.43
LIG1-204ENST00000542460 Q8NAQ8 132 aa12.36□□□□□ -0.43
LIG1-204ENST00000542460 NHLRC2Q8NBF2 726 aa12.36□□□□□ -0.43
LIG1-204ENST00000542460 SMIM12Q96EX1 92 aa12.36□□□□□ -0.43
LIG1-204ENST00000542460 IGHV1OR15-1A0A075B7D0 117 aa12.35□□□□□ -0.43
LIG1-204ENST00000542460 IGHV4-28A0A0C4DH34 117 aa12.35□□□□□ -0.43
LIG1-204ENST00000542460 FABP5P3A8MUU1 101 aa12.35□□□□□ -0.43
LIG1-204ENST00000542460 PRM2P04554 102 aa12.35□□□□□ -0.43
LIG1-204ENST00000542460 ZNF674Q2M3X9 581 aa12.35□□□□□ -0.43
LIG1-204ENST00000542460 TENM3Q9P273 2699 aa12.34□□□□□ -0.43
LIG1-204ENST00000542460 TRBV20OR9-2A0A075B6H5 130 aa12.34□□□□□ -0.43
LIG1-204ENST00000542460 C9JCJ5 164 aa12.34□□□□□ -0.43
LIG1-204ENST00000542460 C9JQL5 133 aa12.34□□□□□ -0.43
LIG1-204ENST00000542460 FAM159AQ6UWV7 190 aa12.34□□□□□ -0.43
LIG1-204ENST00000542460 EIF4E3Q8N5X7 224 aaKnown RBP12.34□□□□□ -0.43
LIG1-204ENST00000542460 C11orf68Q9H3H3 251 aaKnown RBP12.34□□□□□ -0.43
LIG1-204ENST00000542460 HUWE1Q7Z6Z7 4374 aaKnown RBP12.34□□□□□ -0.43
LIG1-204ENST00000542460 TMEM189A5PLL7 270 aa12.33□□□□□ -0.44
LIG1-204ENST00000542460 IGLV2-8P01709 118 aa12.33□□□□□ -0.44
LIG1-204ENST00000542460 AZU1P20160 251 aa12.33□□□□□ -0.44
LIG1-204ENST00000542460 CRIP1P50238 77 aa12.33□□□□□ -0.44
LIG1-204ENST00000542460 MUC21Q5SSG8 566 aa12.33□□□□□ -0.44
LIG1-204ENST00000542460 FAM162BQ5T6X4 162 aa12.33□□□□□ -0.44
LIG1-204ENST00000542460 ZNF493Q6ZR52 646 aa12.33□□□□□ -0.44
LIG1-204ENST00000542460 A0A0J9YWU9 116 aa12.32□□□□□ -0.44
LIG1-204ENST00000542460 CBY3A6NI87 242 aa12.32□□□□□ -0.44
LIG1-204ENST00000542460 TDRG1Q3Y452 100 aa12.32□□□□□ -0.44
LIG1-204ENST00000542460 ANXA2RQ3ZCQ2 193 aa12.32□□□□□ -0.44
LIG1-204ENST00000542460 TMEM263Q8WUH6 116 aaKnown RBP12.32□□□□□ -0.44
LIG1-204ENST00000542460 C16orf74Q96GX8 76 aa12.32□□□□□ -0.44
LIG1-204ENST00000542460 KCNS1Q96KK3 526 aa12.32□□□□□ -0.44
LIG1-204ENST00000542460 SMIM7Q9BQ49 75 aa12.32□□□□□ -0.44
LIG1-204ENST00000542460 NAGKQ9UJ70 344 aa12.32□□□□□ -0.44
LIG1-204ENST00000542460 DEFB4AO15263 64 aa12.32□□□□□ -0.44
LIG1-204ENST00000542460 PGPEP1LA6NFU8 196 aa12.31□□□□□ -0.44
LIG1-204ENST00000542460 ZNF727A8MUV8 499 aa12.31□□□□□ -0.44
LIG1-204ENST00000542460 SH2D1AO60880 128 aa12.31□□□□□ -0.44
LIG1-204ENST00000542460 MGST1P10620 155 aaKnown RBP12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms