RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 IGLC6P0CF74 106 aa9.67□□□□□ -0.86
RNF4-222ENST00000541204 BMI1P35226 326 aa9.67□□□□□ -0.86
RNF4-222ENST00000541204 ATP5J2P56134 94 aa9.67□□□□□ -0.86
RNF4-222ENST00000541204 RPS20P60866 119 aaKnown RBP9.67□□□□□ -0.86
RNF4-222ENST00000541204 PRSS57Q6UWY2 283 aa9.67□□□□□ -0.86
RNF4-222ENST00000541204 C18orf15Q96N68 181 aa9.67□□□□□ -0.86
RNF4-222ENST00000541204 DKK2Q9UBU2 259 aa9.67□□□□□ -0.86
RNF4-222ENST00000541204 CLEC3BP05452 202 aa9.66□□□□□ -0.86
RNF4-222ENST00000541204 NMUP48645 174 aa9.66□□□□□ -0.86
RNF4-222ENST00000541204 ERCC8Q13216 396 aa9.66□□□□□ -0.86
RNF4-222ENST00000541204 IGHV3-49A0A0A0MS15 119 aa9.66□□□□□ -0.86
RNF4-222ENST00000541204 SMAD7O15105 426 aaKnown RBP9.66□□□□□ -0.86
RNF4-222ENST00000541204 PCP2Q8IVA1 136 aa9.66□□□□□ -0.86
RNF4-222ENST00000541204 NAA38Q9BRA0 125 aaKnown RBP9.66□□□□□ -0.86
RNF4-222ENST00000541204 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.66□□□□□ -0.862e-7■■■■■ 29.5
RNF4-222ENST00000541204 PPIFP30405 207 aaKnown RBP9.65□□□□□ -0.86
RNF4-222ENST00000541204 RNF185Q96GF1 192 aa9.65□□□□□ -0.86
RNF4-222ENST00000541204 PIMREGQ9BSJ6 248 aa9.65□□□□□ -0.86
RNF4-222ENST00000541204 IGHV4-30-2A0A087WSY4 118 aa9.65□□□□□ -0.86
RNF4-222ENST00000541204 A1L4Q6 167 aa9.65□□□□□ -0.86
RNF4-222ENST00000541204 PRAC2D3DTV9 90 aa9.65□□□□□ -0.86
RNF4-222ENST00000541204 LY6EQ16553 131 aa9.65□□□□□ -0.86
RNF4-222ENST00000541204 CLEC19AQ6UXS0 136 aa9.65□□□□□ -0.86
RNF4-222ENST00000541204 USP9YO00507 2555 aaPredicted RBP9.65□□□□□ -0.86
RNF4-222ENST00000541204 GAGE10A6NGK3 116 aa9.64□□□□□ -0.87
RNF4-222ENST00000541204 ZNF207O43670 478 aaKnown RBP9.64□□□□□ -0.87
RNF4-222ENST00000541204 IGHV4-38-2P0DP08 117 aa9.64□□□□□ -0.87
RNF4-222ENST00000541204 EVI2AP22794 236 aa9.64□□□□□ -0.87
RNF4-222ENST00000541204 RNF182Q8N6D2 247 aa9.64□□□□□ -0.87
RNF4-222ENST00000541204 VPS25Q9BRG1 176 aa9.64□□□□□ -0.87
RNF4-222ENST00000541204 A6NDN8 102 aa9.63□□□□□ -0.87
RNF4-222ENST00000541204 FABP5P3A8MUU1 101 aa9.63□□□□□ -0.87
RNF4-222ENST00000541204 PPBPP02775 128 aa9.63□□□□□ -0.87
RNF4-222ENST00000541204 ADAMTSL5Q6ZMM2 481 aa9.63□□□□□ -0.87
RNF4-222ENST00000541204 ARL6IP6Q8N6S5 226 aa9.63□□□□□ -0.87
RNF4-222ENST00000541204 AP1S3Q96PC3 154 aa9.63□□□□□ -0.87
RNF4-222ENST00000541204 JMJD8Q96S16 334 aa9.63□□□□□ -0.87
RNF4-222ENST00000541204 MAP1LC3AQ9H492 121 aa9.63□□□□□ -0.87
RNF4-222ENST00000541204 FBLL1A6NHQ2 334 aaKnown RBP9.63□□□□□ -0.87
RNF4-222ENST00000541204 H3BUT2 72 aa9.63□□□□□ -0.87
RNF4-222ENST00000541204 GATA1P15976 413 aaPredicted RBP9.63□□□□□ -0.87
RNF4-222ENST00000541204 LEPP41159 167 aa9.63□□□□□ -0.87
RNF4-222ENST00000541204 KIR3DS1Q14943 382 aa9.63□□□□□ -0.87
RNF4-222ENST00000541204 CLEC2AQ6UVW9 174 aa9.63□□□□□ -0.87
RNF4-222ENST00000541204 OR9G4Q8NGQ1 327 aa9.63□□□□□ -0.87
RNF4-222ENST00000541204 FAM110DQ8TAY7 271 aaPredicted RBP9.63□□□□□ -0.87
RNF4-222ENST00000541204 RAB37Q96AX2 223 aa9.63□□□□□ -0.87
RNF4-222ENST00000541204 PSMG3-AS1Q96PY0 264 aa9.63□□□□□ -0.87
RNF4-222ENST00000541204 C9orf118A6NHY6 69 aa9.63□□□□□ -0.87
RNF4-222ENST00000541204 H3BRM9 83 aa9.63□□□□□ -0.87
RNF4-222ENST00000541204 HSD52Q0P140 79 aa9.63□□□□□ -0.87
RNF4-222ENST00000541204 IL17RELQ6ZVW7 336 aa9.63□□□□□ -0.87
RNF4-222ENST00000541204 C5orf56Q8N8D9 126 aa9.63□□□□□ -0.87
RNF4-222ENST00000541204 C10orf105Q8TEF2 133 aa9.63□□□□□ -0.87
RNF4-222ENST00000541204 ZANQ9Y493 2812 aa9.62□□□□□ -0.87
RNF4-222ENST00000541204 CSPG4Q6UVK1 2322 aa9.62□□□□□ -0.87
RNF4-222ENST00000541204 SCGB2A1O75556 95 aa9.62□□□□□ -0.87
RNF4-222ENST00000541204 EPG5Q9HCE0 2579 aa9.62□□□□□ -0.87
RNF4-222ENST00000541204 IGHV1-69DA0A0B4J2H0 117 aa9.62□□□□□ -0.87
RNF4-222ENST00000541204 TNFRSF6BO95407 300 aa9.62□□□□□ -0.87
RNF4-222ENST00000541204 IGHV1-69P01742 117 aa9.62□□□□□ -0.87
RNF4-222ENST00000541204 ZNF502Q8TBZ5 544 aa9.62□□□□□ -0.87
RNF4-222ENST00000541204 CCDC140Q96MF4 163 aa9.62□□□□□ -0.87
RNF4-222ENST00000541204 CNFNQ9BYD5 112 aa9.62□□□□□ -0.87
RNF4-222ENST00000541204 SIVA1O15304 175 aa9.61□□□□□ -0.87
RNF4-222ENST00000541204 TM4SF20Q53R12 229 aa9.61□□□□□ -0.87
RNF4-222ENST00000541204 IGKV2D-26A0A0A0MRZ7 120 aa9.61□□□□□ -0.87
RNF4-222ENST00000541204 SRSF2Q01130 221 aaKnown RBP9.61□□□□□ -0.87
RNF4-222ENST00000541204 UFSP1Q6NVU6 142 aa9.61□□□□□ -0.87
RNF4-222ENST00000541204 OR4X2Q8NGF9 303 aa9.61□□□□□ -0.87
RNF4-222ENST00000541204 TTTY13Q9BZ97 58 aa9.61□□□□□ -0.87
RNF4-222ENST00000541204 FBN2P35556 2912 aa9.61□□□□□ -0.87
RNF4-222ENST00000541204 A0A0G2JLM5 398 aa9.6□□□□□ -0.87
RNF4-222ENST00000541204 BUB3O43684 328 aa9.6□□□□□ -0.87
RNF4-222ENST00000541204 PIFOQ8TCI5 191 aa9.6□□□□□ -0.87
RNF4-222ENST00000541204 SAP30O75446 220 aa9.6□□□□□ -0.87
RNF4-222ENST00000541204 PRSS1P07477 247 aa9.6□□□□□ -0.87
RNF4-222ENST00000541204 FCER1GP30273 86 aa9.6□□□□□ -0.87
RNF4-222ENST00000541204 ODF1Q14990 250 aa9.6□□□□□ -0.87
RNF4-222ENST00000541204 LINC01559Q495D7 138 aa9.6□□□□□ -0.87
RNF4-222ENST00000541204 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa9.6□□□□□ -0.87
RNF4-222ENST00000541204 GTF2H5Q6ZYL4 71 aa9.6□□□□□ -0.87
RNF4-222ENST00000541204 MAPK1IP1LQ8NDC0 245 aa9.6□□□□□ -0.87
RNF4-222ENST00000541204 ZFAND3Q9H8U3 227 aa9.6□□□□□ -0.87
RNF4-222ENST00000541204 ABCA12Q86UK0 2595 aa9.59□□□□□ -0.87
RNF4-222ENST00000541204 IGKV3D-20A0A0C4DH25 116 aa9.59□□□□□ -0.87
RNF4-222ENST00000541204 NPFFR1Q9GZQ6 430 aa9.59□□□□□ -0.87
RNF4-222ENST00000541204 C11orf21Q9P2W6 132 aa9.59□□□□□ -0.87
RNF4-222ENST00000541204 HHLA3Q9XRX5 114 aa9.59□□□□□ -0.87
RNF4-222ENST00000541204 LINC01546A6NGU7 62 aa9.59□□□□□ -0.87
RNF4-222ENST00000541204 H3BUX3 64 aa9.59□□□□□ -0.87
RNF4-222ENST00000541204 K7ERU9 68 aa9.59□□□□□ -0.87
RNF4-222ENST00000541204 TRGV3P03979 118 aa9.59□□□□□ -0.87
RNF4-222ENST00000541204 COTL1Q14019 142 aa9.59□□□□□ -0.87
RNF4-222ENST00000541204 TMEM158Q8WZ71 300 aa9.59□□□□□ -0.87
RNF4-222ENST00000541204 NXT2Q9NPJ8 142 aaKnown RBP9.59□□□□□ -0.87
RNF4-222ENST00000541204 MOB4Q9Y3A3 225 aa9.59□□□□□ -0.87
RNF4-222ENST00000541204 TRAV41A0A0B4J266 112 aa9.58□□□□□ -0.88
RNF4-222ENST00000541204 LCNL1Q6ZST4 164 aa9.58□□□□□ -0.88
RNF4-222ENST00000541204 K7EP34 96 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 153.4 ms