RNA–Protein interactions for RNA: ENST00000540021.5

MSH6-210, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 3,930 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-210ENST00000540021 HERVK_113P61574 105 aa10.17□□□□□ -0.78
MSH6-210ENST00000540021 SRSF1Q07955 248 aaKnown RBP eCLIP10.17□□□□□ -0.786e-6■■■■□ 21.2
MSH6-210ENST00000540021 OR10J6PQ8NGY7 276 aa10.17□□□□□ -0.78
MSH6-210ENST00000540021 CHTOPQ9Y3Y2 248 aaKnown RBP10.17□□□□□ -0.78
MSH6-210ENST00000540021 C2CD3Q4AC94 2353 aa10.17□□□□□ -0.78
MSH6-210ENST00000540021 IGHV3-11P01762 117 aa10.17□□□□□ -0.78
MSH6-210ENST00000540021 WFDC2Q14508 124 aa10.17□□□□□ -0.78
MSH6-210ENST00000540021 PLA2G2CQ5R387 149 aa10.16□□□□□ -0.78
MSH6-210ENST00000540021 DYNAPQ8N1N2 210 aa10.16□□□□□ -0.78
MSH6-210ENST00000540021 C14orf178Q8N769 122 aaPredicted RBP10.16□□□□□ -0.78
MSH6-210ENST00000540021 HOXA3O43365 443 aaPredicted RBP10.16□□□□□ -0.78
MSH6-210ENST00000540021 SRD5A1P18405 259 aa10.16□□□□□ -0.78
MSH6-210ENST00000540021 PDE6HQ13956 83 aa10.16□□□□□ -0.78
MSH6-210ENST00000540021 PGPEP1Q9NXJ5 209 aa10.16□□□□□ -0.78
MSH6-210ENST00000540021 IGLV2-11P01706 119 aa10.16□□□□□ -0.78
MSH6-210ENST00000540021 ZNF80P51504 273 aaPredicted RBP10.16□□□□□ -0.78
MSH6-210ENST00000540021 RNASE4P34096 147 aaKnown RBP10.15□□□□□ -0.78
MSH6-210ENST00000540021 PCSK5Q92824 1860 aa10.15□□□□□ -0.78
MSH6-210ENST00000540021 PTPRBP23467 1997 aa10.15□□□□□ -0.78
MSH6-210ENST00000540021 IGKV2D-26A0A0A0MRZ7 120 aa10.15□□□□□ -0.78
MSH6-210ENST00000540021 INS-IGF2F8WCM5 200 aa10.15□□□□□ -0.78
MSH6-210ENST00000540021 LY6EQ16553 131 aa10.15□□□□□ -0.78
MSH6-210ENST00000540021 NEGR1Q7Z3B1 354 aa10.15□□□□□ -0.78
MSH6-210ENST00000540021 IGHV3-64A0A075B6Q5 118 aa10.14□□□□□ -0.79
MSH6-210ENST00000540021 PRAC2D3DTV9 90 aa10.14□□□□□ -0.79
MSH6-210ENST00000540021 GAS8-AS1O95177 125 aa10.14□□□□□ -0.79
MSH6-210ENST00000540021 THBDP07204 575 aa10.14□□□□□ -0.79
MSH6-210ENST00000540021 PRSS2P07478 247 aa10.14□□□□□ -0.79
MSH6-210ENST00000540021 TMEM219Q86XT9 240 aa10.14□□□□□ -0.79
MSH6-210ENST00000540021 LINC00574Q9H8X3 128 aa10.14□□□□□ -0.79
MSH6-210ENST00000540021 G3V318 75 aa10.14□□□□□ -0.79
MSH6-210ENST00000540021 TRGV3P03979 118 aa10.14□□□□□ -0.79
MSH6-210ENST00000540021 PF4V1P10720 104 aa10.14□□□□□ -0.79
MSH6-210ENST00000540021 ZNF256Q9Y2P7 627 aaPredicted RBP10.14□□□□□ -0.79
MSH6-210ENST00000540021 PTPRQQ9UMZ3 2332 aa10.14□□□□□ -0.79
MSH6-210ENST00000540021 G3V4G9 280 aa10.14□□□□□ -0.79
MSH6-210ENST00000540021 ZNF562Q6V9R5 426 aa10.14□□□□□ -0.79
MSH6-210ENST00000540021 VMO1Q7Z5L0 202 aa10.14□□□□□ -0.79
MSH6-210ENST00000540021 CEND1Q8N111 149 aa10.14□□□□□ -0.79
MSH6-210ENST00000540021 CFHR4Q92496 578 aa10.14□□□□□ -0.79
MSH6-210ENST00000540021 LYRM7Q5U5X0 104 aa10.13□□□□□ -0.79
MSH6-210ENST00000540021 LOC400499M0QZD8 3231 aa10.13□□□□□ -0.79
MSH6-210ENST00000540021 MUC6Q6W4X9 2439 aa10.13□□□□□ -0.79
MSH6-210ENST00000540021 GAGE12HA6NDE8 117 aa10.13□□□□□ -0.79
MSH6-210ENST00000540021 EEF1AKMT3Q96AZ1 226 aa10.13□□□□□ -0.79
MSH6-210ENST00000540021 SPOCK3Q9BQ16 436 aa10.13□□□□□ -0.79
MSH6-210ENST00000540021 SMPXQ9UHP9 88 aa10.13□□□□□ -0.79
MSH6-210ENST00000540021 ASIPP42127 132 aa10.13□□□□□ -0.79
MSH6-210ENST00000540021 ATP5G2Q06055 141 aa10.13□□□□□ -0.79
MSH6-210ENST00000540021 IGFL2Q6UWQ7 119 aa10.13□□□□□ -0.79
MSH6-210ENST00000540021 IGLV1-47P01700 117 aa10.12□□□□□ -0.79
MSH6-210ENST00000540021 NDUFS8O00217 210 aa10.12□□□□□ -0.79
MSH6-210ENST00000540021 FSTL3O95633 263 aa10.12□□□□□ -0.79
MSH6-210ENST00000540021 CKS1BP61024 79 aa10.12□□□□□ -0.79
MSH6-210ENST00000540021 C12orf74Q32Q52 190 aa10.12□□□□□ -0.79
MSH6-210ENST00000540021 CLEC2AQ6UVW9 174 aa10.12□□□□□ -0.79
MSH6-210ENST00000540021 SLC50A1Q9BRV3 221 aa10.12□□□□□ -0.79
MSH6-210ENST00000540021 NACAE9PAV3 2078 aa10.11□□□□□ -0.79
MSH6-210ENST00000540021 GRNP28799 593 aaKnown RBP10.11□□□□□ -0.79
MSH6-210ENST00000540021 Q8N8P6 123 aa10.11□□□□□ -0.79
MSH6-210ENST00000540021 LINC01549A6NIU2 74 aa10.11□□□□□ -0.79
MSH6-210ENST00000540021 SIVA1O15304 175 aa10.11□□□□□ -0.79
MSH6-210ENST00000540021 RAB9AP51151 201 aa10.11□□□□□ -0.79
MSH6-210ENST00000540021 ODF1Q14990 250 aa10.11□□□□□ -0.79
MSH6-210ENST00000540021 RNF5Q99942 180 aa10.11□□□□□ -0.79
MSH6-210ENST00000540021 KAAG1Q9UBP8 84 aa10.11□□□□□ -0.79
MSH6-210ENST00000540021 H7C1H1 209 aa10.11□□□□□ -0.79
MSH6-210ENST00000540021 LGALS3P17931 250 aaKnown RBP10.1□□□□□ -0.79
MSH6-210ENST00000540021 C3orf36Q3SXR2 165 aa10.1□□□□□ -0.79
MSH6-210ENST00000540021 PLNP26678 52 aa10.1□□□□□ -0.79
MSH6-210ENST00000540021 ZNF56Q15929 161 aa10.1□□□□□ -0.79
MSH6-210ENST00000540021 AGPAT4-IT1Q9H0P7 198 aa10.1□□□□□ -0.79
MSH6-210ENST00000540021 SHISA9B4DS77 424 aa10.1□□□□□ -0.79
MSH6-210ENST00000540021 SLC25A16P16260 332 aa10.1□□□□□ -0.79
MSH6-210ENST00000540021 PSMG4Q5JS54 123 aa10.1□□□□□ -0.79
MSH6-210ENST00000540021 KIR2DL4Q99706 377 aa10.1□□□□□ -0.79
MSH6-210ENST00000540021 IGLL5B9A064 214 aa10.09□□□□□ -0.79
MSH6-210ENST00000540021 DEFB1P60022 68 aa10.09□□□□□ -0.79
MSH6-210ENST00000540021 AGRNO00468 2067 aa10.09□□□□□ -0.79
MSH6-210ENST00000540021 ATP6V0E1O15342 81 aa10.09□□□□□ -0.79
MSH6-210ENST00000540021 ORMDL2Q53FV1 153 aa10.09□□□□□ -0.79
MSH6-210ENST00000540021 DPF1Q92782 380 aa10.09□□□□□ -0.79
MSH6-210ENST00000540021 HLA-DRB4P13762 266 aa10.09□□□□□ -0.79
MSH6-210ENST00000540021 FAM159AQ6UWV7 190 aa10.09□□□□□ -0.79
MSH6-210ENST00000540021 C8orf31Q8N9H6 132 aa10.09□□□□□ -0.79
MSH6-210ENST00000540021 HLA-DRB4X5D2U9 266 aa10.09□□□□□ -0.79
MSH6-210ENST00000540021 FCN3O75636 299 aa10.08□□□□□ -0.8
MSH6-210ENST00000540021 FGF6P10767 208 aa10.08□□□□□ -0.8
MSH6-210ENST00000540021 RAI1Q7Z5J4 1906 aaPredicted RBP10.08□□□□□ -0.8
MSH6-210ENST00000540021 CEACAM4O75871 244 aa10.08□□□□□ -0.8
MSH6-210ENST00000540021 C2orf66Q6UXQ4 117 aa10.08□□□□□ -0.8
MSH6-210ENST00000540021 ZNF493Q6ZR52 646 aa10.08□□□□□ -0.8
MSH6-210ENST00000540021 RAX2Q96IS3 184 aa10.08□□□□□ -0.8
MSH6-210ENST00000540021 PRADC1Q9BSG0 188 aa10.08□□□□□ -0.8
MSH6-210ENST00000540021 A0A087WWL8 130 aa10.08□□□□□ -0.8
MSH6-210ENST00000540021 A0A096LNJ9 63 aa10.08□□□□□ -0.8
MSH6-210ENST00000540021 CTSGP08311 255 aa10.08□□□□□ -0.8
MSH6-210ENST00000540021 SYT8Q8NBV8 401 aa10.08□□□□□ -0.8
MSH6-210ENST00000540021 ASPMQ8IZT6 3477 aa10.07□□□□□ -0.8
MSH6-210ENST00000540021 NCOR2Q9Y618 2525 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms