RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 C2orf50Q96LR7 162 aa9.18□□□□□ -0.94
SS18-204ENST00000539244 SLC25A2Q9BXI2 301 aa9.18□□□□□ -0.94
SS18-204ENST00000539244 FAM25EA8MYX2 175 aa9.17□□□□□ -0.94
SS18-204ENST00000539244 GCSHP23434 173 aa9.17□□□□□ -0.94
SS18-204ENST00000539244 SRIP30626 198 aa9.17□□□□□ -0.94
SS18-204ENST00000539244 GCSAMLQ5JQS6 135 aa9.17□□□□□ -0.94
SS18-204ENST00000539244 FAM122CQ6P4D5 195 aa9.17□□□□□ -0.94
SS18-204ENST00000539244 STX12Q86Y82 276 aa9.17□□□□□ -0.94
SS18-204ENST00000539244 OR10G4Q8NGN3 311 aa9.17□□□□□ -0.94
SS18-204ENST00000539244 RASL10AQ92737 203 aa9.17□□□□□ -0.94
SS18-204ENST00000539244 NPCDR1Q9BY65 106 aa9.17□□□□□ -0.94
SS18-204ENST00000539244 TRGV4A0A0C4DH28 118 aa9.16□□□□□ -0.94
SS18-204ENST00000539244 C5orf51A6NDU8 294 aa9.16□□□□□ -0.94
SS18-204ENST00000539244 PLA2G10O15496 165 aa9.16□□□□□ -0.94
SS18-204ENST00000539244 ORM1P02763 201 aa9.16□□□□□ -0.94
SS18-204ENST00000539244 NBEAP1P0C6P0 100 aa9.16□□□□□ -0.94
SS18-204ENST00000539244 EVI2AP22794 236 aa9.16□□□□□ -0.94
SS18-204ENST00000539244 ZNF138P52744 262 aa9.16□□□□□ -0.94
SS18-204ENST00000539244 RBAKDNA6NC62 111 aa9.15□□□□□ -0.94
SS18-204ENST00000539244 E5RGE8 158 aa9.15□□□□□ -0.94
SS18-204ENST00000539244 TCRBP04435 133 aa9.15□□□□□ -0.94
SS18-204ENST00000539244 RAB32Q13637 225 aa9.15□□□□□ -0.94
SS18-204ENST00000539244 ZNF266Q14584 549 aa9.15□□□□□ -0.94
SS18-204ENST00000539244 C10orf126Q8N4M7 172 aa9.15□□□□□ -0.94
SS18-204ENST00000539244 PCNPQ8WW12 178 aaKnown RBP9.15□□□□□ -0.94
SS18-204ENST00000539244 ZNF479Q96JC4 524 aa9.15□□□□□ -0.94
SS18-204ENST00000539244 SEC22CQ9BRL7 303 aa9.15□□□□□ -0.94
SS18-204ENST00000539244 SPXQ9BT56 116 aa9.15□□□□□ -0.94
SS18-204ENST00000539244 GPN1Q9HCN4 374 aaPredicted RBP9.15□□□□□ -0.94
SS18-204ENST00000539244 MDFICQ9P1T7 246 aa9.15□□□□□ -0.94
SS18-204ENST00000539244 LYRM1O43325 122 aa9.14□□□□□ -0.95
SS18-204ENST00000539244 SMR3BP02814 79 aaPredicted RBP9.14□□□□□ -0.95
SS18-204ENST00000539244 SFTA3P0C7M3 94 aa9.14□□□□□ -0.95
SS18-204ENST00000539244 GYPEP15421 78 aa9.14□□□□□ -0.95
SS18-204ENST00000539244 S100A10P60903 97 aa9.14□□□□□ -0.95
SS18-204ENST00000539244 Q6AWC8 147 aa9.14□□□□□ -0.95
SS18-204ENST00000539244 MIR17HGQ75NE6 70 aa9.14□□□□□ -0.95
SS18-204ENST00000539244 Q8TAT8 98 aa9.14□□□□□ -0.95
SS18-204ENST00000539244 FXYD5Q96DB9 178 aa9.14□□□□□ -0.95
SS18-204ENST00000539244 TXNDC17Q9BRA2 123 aa9.14□□□□□ -0.95
SS18-204ENST00000539244 TMEM70Q9BUB7 260 aa9.14□□□□□ -0.95
SS18-204ENST00000539244 OR51M1Q9H341 326 aa9.14□□□□□ -0.95
SS18-204ENST00000539244 SRRM2Q9UQ35 2752 aaKnown RBP9.14□□□□□ -0.95
SS18-204ENST00000539244 DNAH8Q96JB1 4490 aa9.13□□□□□ -0.95
SS18-204ENST00000539244 TRAV6A0A075B6T7 132 aa9.13□□□□□ -0.95
SS18-204ENST00000539244 C9JCJ5 164 aa9.13□□□□□ -0.95
SS18-204ENST00000539244 CRYGDP07320 174 aa9.13□□□□□ -0.95
SS18-204ENST00000539244 TIRAPP58753 221 aa9.13□□□□□ -0.95
SS18-204ENST00000539244 MUC21Q5SSG8 566 aa9.13□□□□□ -0.95
SS18-204ENST00000539244 NTN5Q8WTR8 489 aaPredicted RBP9.13□□□□□ -0.95
SS18-204ENST00000539244 NUDT15Q9NV35 164 aa9.13□□□□□ -0.95
SS18-204ENST00000539244 LENEPQ9Y5L5 61 aa9.13□□□□□ -0.95
SS18-204ENST00000539244 TRGV11A0A075B6L2 103 aa9.12□□□□□ -0.95
SS18-204ENST00000539244 TRAV4A0A0B4J268 109 aa9.12□□□□□ -0.95
SS18-204ENST00000539244 LRCOL1A6NCL2 159 aa9.12□□□□□ -0.95
SS18-204ENST00000539244 FAM229AH3BQW9 127 aa9.12□□□□□ -0.95
SS18-204ENST00000539244 TDRG1Q3Y452 100 aa9.12□□□□□ -0.95
SS18-204ENST00000539244 Q6ZSN1 163 aa9.12□□□□□ -0.95
SS18-204ENST00000539244 SH2D6Q7Z4S9 175 aa9.12□□□□□ -0.95
SS18-204ENST00000539244 PHYHIPLQ96FC7 376 aa9.12□□□□□ -0.95
SS18-204ENST00000539244 PAXXQ9BUH6 204 aa9.12□□□□□ -0.95
SS18-204ENST00000539244 OR10J4P0C629 311 aa9.11□□□□□ -0.95
SS18-204ENST00000539244 CSN1S1P47710 185 aa9.11□□□□□ -0.95
SS18-204ENST00000539244 NHLH2Q02577 135 aa9.11□□□□□ -0.95
SS18-204ENST00000539244 OR5C1Q8NGR4 320 aa9.11□□□□□ -0.95
SS18-204ENST00000539244 THAP6Q8TBB0 222 aa9.11□□□□□ -0.95
SS18-204ENST00000539244 KCNIP2Q9NS61 270 aa9.11□□□□□ -0.95
SS18-204ENST00000539244 IGLV5-52A0A0A0MRZ9 124 aa9.1□□□□□ -0.95
SS18-204ENST00000539244 TMEM183BQ1AE95 376 aa9.1□□□□□ -0.95
SS18-204ENST00000539244 LINC01556Q5JQF7 62 aa9.1□□□□□ -0.95
SS18-204ENST00000539244 FAM159AQ6UWV7 190 aa9.1□□□□□ -0.95
SS18-204ENST00000539244 TMEM183AQ8IXX5 376 aa9.1□□□□□ -0.95
SS18-204ENST00000539244 TMED6Q8WW62 240 aa9.1□□□□□ -0.95
SS18-204ENST00000539244 IGHV3-38A0A0C4DH36 116 aa9.09□□□□□ -0.95
SS18-204ENST00000539244 IBA57-AS1B1ANH7 110 aa9.09□□□□□ -0.95
SS18-204ENST00000539244 DIRC3C9JPN6 131 aa9.09□□□□□ -0.95
SS18-204ENST00000539244 M0R2P5 195 aa9.09□□□□□ -0.95
SS18-204ENST00000539244 H2AFB2P0C5Z0 115 aa9.09□□□□□ -0.95
SS18-204ENST00000539244 RANP62826 216 aaKnown RBP9.09□□□□□ -0.95
SS18-204ENST00000539244 OR4C5Q8NGB2 326 aa9.09□□□□□ -0.95
SS18-204ENST00000539244 WDR61Q9GZS3 305 aaKnown RBP9.09□□□□□ -0.95
SS18-204ENST00000539244 SLC25A31Q9H0C2 315 aa9.09□□□□□ -0.95
SS18-204ENST00000539244 BOLA1Q9Y3E2 137 aa9.09□□□□□ -0.95
SS18-204ENST00000539244 LOC100131303A0A0U1RQF7 123 aa9.08□□□□□ -0.96
SS18-204ENST00000539244 PSCAO43653 123 aa9.08□□□□□ -0.96
SS18-204ENST00000539244 OR7C2O60412 319 aa9.08□□□□□ -0.96
SS18-204ENST00000539244 C1QBP02746 253 aa9.08□□□□□ -0.96
SS18-204ENST00000539244 GATA1P15976 413 aaPredicted RBP9.08□□□□□ -0.96
SS18-204ENST00000539244 HAMPP81172 84 aa9.08□□□□□ -0.96
SS18-204ENST00000539244 Q8N814 137 aa9.08□□□□□ -0.96
SS18-204ENST00000539244 IGHV3-16A0A0C4DH30 117 aa9.07□□□□□ -0.96
SS18-204ENST00000539244 C17orf112F2Z3M2 114 aa9.06□□□□□ -0.96
SS18-204ENST00000539244 UBE2L3P68036 154 aaKnown RBP9.06□□□□□ -0.96
SS18-204ENST00000539244 CCDC32Q9BV29 185 aa9.06□□□□□ -0.96
SS18-204ENST00000539244 NMES1Q9C002 83 aa9.06□□□□□ -0.96
SS18-204ENST00000539244 FAM30AQ9NZY2 134 aa9.06□□□□□ -0.96
SS18-204ENST00000539244 TRAV21A0A0B4J279 112 aa9.05□□□□□ -0.96
SS18-204ENST00000539244 GNRH2O43555 120 aa9.05□□□□□ -0.96
SS18-204ENST00000539244 TYMSP04818 313 aa9.05□□□□□ -0.96
SS18-204ENST00000539244 PFN1P07737 140 aaKnown RBP9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms