RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-216ENST00000525293 PPRC1Q5VV67 1664 aaKnown RBP1.57□□□□□ -2.16
CD44-216ENST00000525293 THSD7AQ9UPZ6 1657 aa1.57□□□□□ -2.16
CD44-216ENST00000525293 LAMB4A4D0S4 1761 aa1.57□□□□□ -2.16
CD44-216ENST00000525293 C10orf71Q711Q0 1435 aa1.57□□□□□ -2.16
CD44-216ENST00000525293 COL1A1P02452 1464 aaPredicted RBP1.56□□□□□ -2.16
CD44-216ENST00000525293 ZMYM4Q5VZL5 1548 aa1.56□□□□□ -2.16
CD44-216ENST00000525293 A0A0C4DFX4 3053 aa1.56□□□□□ -2.16
CD44-216ENST00000525293 ADGRB1O14514 1584 aa1.56□□□□□ -2.16
CD44-216ENST00000525293 IQGAP2Q13576 1575 aa1.56□□□□□ -2.16
CD44-216ENST00000525293 CFAP74Q9C0B2 1584 aa1.56□□□□□ -2.16
CD44-216ENST00000525293 OTOFQ9HC10 1997 aa1.56□□□□□ -2.16
CD44-216ENST00000525293 CITO14578 2027 aa1.56□□□□□ -2.16
CD44-216ENST00000525293 PCNTO95613 3336 aa1.56□□□□□ -2.16
CD44-216ENST00000525293 ZNF142P52746 1687 aaPredicted RBP1.56□□□□□ -2.16
CD44-216ENST00000525293 IGHV1-45A0A0A0MS14 117 aa1.56□□□□□ -2.16
CD44-216ENST00000525293 IGHV5-51A0A0C4DH38 117 aa1.56□□□□□ -2.16
CD44-216ENST00000525293 IGKV1-6A0A0C4DH72 117 aa1.56□□□□□ -2.16
CD44-216ENST00000525293 UBE2L5PA0A1B0GUS4 154 aa1.56□□□□□ -2.16
CD44-216ENST00000525293 C17orf51A8MQB3 221 aa1.56□□□□□ -2.16
CD44-216ENST00000525293 B4DSR2 109 aa1.56□□□□□ -2.16
CD44-216ENST00000525293 ZNF736B4DX44 427 aaPredicted RBP1.56□□□□□ -2.16
CD44-216ENST00000525293 ATOX1O00244 68 aa1.56□□□□□ -2.16
CD44-216ENST00000525293 CCKP06307 115 aa1.56□□□□□ -2.16
CD44-216ENST00000525293 COX8AP10176 69 aa1.56□□□□□ -2.16
CD44-216ENST00000525293 ZNF32P17041 273 aa1.56□□□□□ -2.16
CD44-216ENST00000525293 HIST1H4AP62805 103 aaKnown RBP1.56□□□□□ -2.16
CD44-216ENST00000525293 UBE2L3P68036 154 aaKnown RBP1.56□□□□□ -2.16
CD44-216ENST00000525293 MRPS36P82909 103 aaKnown RBP1.56□□□□□ -2.16
CD44-216ENST00000525293 TMEM155Q4W5P6 130 aa1.56□□□□□ -2.16
CD44-216ENST00000525293 C2orf66Q6UXQ4 117 aa1.56□□□□□ -2.16
CD44-216ENST00000525293 C16orf47Q6ZP98 133 aaPredicted RBP1.56□□□□□ -2.16
CD44-216ENST00000525293 SMIM5Q71RC9 77 aa1.56□□□□□ -2.16
CD44-216ENST00000525293 SERP2Q8N6R1 65 aa1.56□□□□□ -2.16
CD44-216ENST00000525293 SLC25A29Q8N8R3 303 aa1.56□□□□□ -2.16
CD44-216ENST00000525293 MYOZ3Q8TDC0 251 aa1.56□□□□□ -2.16
CD44-216ENST00000525293 HIST1H4GQ99525 98 aa1.56□□□□□ -2.16
CD44-216ENST00000525293 NABP2Q9BQ15 211 aa1.56□□□□□ -2.16
CD44-216ENST00000525293 LCE3DQ9BYE3 92 aa1.56□□□□□ -2.16
CD44-216ENST00000525293 PLA2G12AQ9BZM1 189 aa1.56□□□□□ -2.16
CD44-216ENST00000525293 SMDT1Q9H4I9 107 aa1.56□□□□□ -2.16
CD44-216ENST00000525293 TRAPPC1Q9Y5R8 145 aa1.56□□□□□ -2.16
CD44-216ENST00000525293 ARL2-SNX15V9GYD0 113 aa1.56□□□□□ -2.16
CD44-216ENST00000525293 ANKRD17O75179 2603 aaKnown RBP1.56□□□□□ -2.16
CD44-216ENST00000525293 NLRC5Q86WI3 1866 aa1.56□□□□□ -2.16
CD44-216ENST00000525293 ADGRL1O94910 1474 aa1.56□□□□□ -2.16
CD44-216ENST00000525293 DOCK4Q8N1I0 1966 aa1.56□□□□□ -2.16
CD44-216ENST00000525293 CCDC88CQ9P219 2028 aa1.56□□□□□ -2.16
CD44-216ENST00000525293 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP1.56□□□□□ -2.16
CD44-216ENST00000525293 DLC1Q96QB1 1528 aa1.56□□□□□ -2.16
CD44-216ENST00000525293 ARHGEF12Q9NZN5 1544 aa1.56□□□□□ -2.16
CD44-216ENST00000525293 MYO18AQ92614 2054 aaKnown RBP1.55□□□□□ -2.16
CD44-216ENST00000525293 UNC13BO14795 1591 aa1.55□□□□□ -2.16
CD44-216ENST00000525293 CDC42BPGQ6DT37 1551 aa1.55□□□□□ -2.16
CD44-216ENST00000525293 VWDEQ8N2E2 1590 aa1.55□□□□□ -2.16
CD44-216ENST00000525293 PIK3C2BO00750 1634 aa1.55□□□□□ -2.16
CD44-216ENST00000525293 MROH2AA6NES4 1674 aa1.55□□□□□ -2.16
CD44-216ENST00000525293 SBF2Q86WG5 1849 aa1.55□□□□□ -2.16
CD44-216ENST00000525293 KIF26AQ9ULI4 1882 aaPredicted RBP1.55□□□□□ -2.16
CD44-216ENST00000525293 IGLV3-12A0A075B6K2 115 aa1.55□□□□□ -2.16
CD44-216ENST00000525293 IGKV1D-17A0A075B6S4 117 aa1.55□□□□□ -2.16
CD44-216ENST00000525293 TRAV16A0A0A6YYK6 109 aaPredicted RBP1.55□□□□□ -2.16
CD44-216ENST00000525293 IBA57-AS1B1ANH7 110 aa1.55□□□□□ -2.16
CD44-216ENST00000525293 F2Z2F3 143 aa1.55□□□□□ -2.16
CD44-216ENST00000525293 LEPROTO15243 131 aa1.55□□□□□ -2.16
CD44-216ENST00000525293 HSPB1P04792 205 aaKnown RBP1.55□□□□□ -2.16
CD44-216ENST00000525293 CHTF8P0CG12 524 aa1.55□□□□□ -2.16
CD44-216ENST00000525293 PRB4P10163 310 aaPredicted RBP1.55□□□□□ -2.16
CD44-216ENST00000525293 S100A4P26447 101 aaKnown RBP1.55□□□□□ -2.16
CD44-216ENST00000525293 UBE2AP49459 152 aa1.55□□□□□ -2.16
CD44-216ENST00000525293 CMC4P56277 68 aaPredicted RBP1.55□□□□□ -2.16
CD44-216ENST00000525293 FGF12P61328 243 aa1.55□□□□□ -2.16
CD44-216ENST00000525293 SNRPFP62306 86 aaKnown RBP1.55□□□□□ -2.16
CD44-216ENST00000525293 ZNF56Q15929 161 aa1.55□□□□□ -2.16
CD44-216ENST00000525293 FAM104BQ5XKR9 115 aa1.55□□□□□ -2.16
CD44-216ENST00000525293 TIFABQ6ZNK6 161 aa1.55□□□□□ -2.16
CD44-216ENST00000525293 SCXQ7RTU7 201 aa1.55□□□□□ -2.16
CD44-216ENST00000525293 BAGE3Q86Y29 109 aa1.55□□□□□ -2.16
CD44-216ENST00000525293 BAGE2Q86Y30 109 aa1.55□□□□□ -2.16
CD44-216ENST00000525293 PDPNQ86YL7 162 aa1.55□□□□□ -2.16
CD44-216ENST00000525293 FAM223AQ8IWN6 122 aa1.55□□□□□ -2.16
CD44-216ENST00000525293 TOMM5Q8N4H5 51 aa1.55□□□□□ -2.16
CD44-216ENST00000525293 TMEM252Q8N6L7 170 aa1.55□□□□□ -2.16
CD44-216ENST00000525293 APCDD1LQ8NCL9 501 aa1.55□□□□□ -2.16
CD44-216ENST00000525293 CLEC2BQ92478 149 aa1.55□□□□□ -2.16
CD44-216ENST00000525293 SPTSSAQ969W0 71 aa1.55□□□□□ -2.16
CD44-216ENST00000525293 SLC25A2Q9BXI2 301 aa1.55□□□□□ -2.16
CD44-216ENST00000525293 SLC25A22Q9H936 323 aa1.55□□□□□ -2.16
CD44-216ENST00000525293 PROK2Q9HC23 129 aa1.55□□□□□ -2.16
CD44-216ENST00000525293 OSTCQ9NRP0 149 aa1.55□□□□□ -2.16
CD44-216ENST00000525293 ZNF638Q14966 1978 aaKnown RBP1.55□□□□□ -2.16
CD44-216ENST00000525293 MYO10Q9HD67 2058 aa1.55□□□□□ -2.16
CD44-216ENST00000525293 CRB1P82279 1406 aa1.55□□□□□ -2.16
CD44-216ENST00000525293 ABCC1P33527 1531 aa1.55□□□□□ -2.16
CD44-216ENST00000525293 EFCAB6Q5THR3 1501 aa1.55□□□□□ -2.16
CD44-216ENST00000525293 ASXL1Q8IXJ9 1541 aa1.55□□□□□ -2.16
CD44-216ENST00000525293 ADGBQ8N7X0 1667 aa1.55□□□□□ -2.16
CD44-216ENST00000525293 TNKS1BP1Q9C0C2 1729 aaKnown RBP1.54□□□□□ -2.16
CD44-216ENST00000525293 COL18A1P39060 1754 aa1.54□□□□□ -2.16
CD44-216ENST00000525293 CACNA1BQ00975 2339 aa1.54□□□□□ -2.16
CD44-216ENST00000525293 GPR98Q8WXG9 6306 aa1.54□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms