RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 UNQ6494/PRO21346Q6UXR6 183 aa10.05□□□□□ -0.8
USP53-209ENST00000514665 Q6ZVH6 145 aa10.05□□□□□ -0.8
USP53-209ENST00000514665 FAM223BA6NKX1 122 aa10.04□□□□□ -0.8
USP53-209ENST00000514665 SPINK13Q1W4C9 94 aa10.04□□□□□ -0.8
USP53-209ENST00000514665 FAM223AQ8IWN6 122 aa10.04□□□□□ -0.8
USP53-209ENST00000514665 PHLDA1Q8WV24 401 aaPredicted RBP10.04□□□□□ -0.8
USP53-209ENST00000514665 TMEM14CQ9P0S9 112 aa10.04□□□□□ -0.8
USP53-209ENST00000514665 DEFB131AP59861 70 aa10.04□□□□□ -0.8
USP53-209ENST00000514665 C2orf66Q6UXQ4 117 aa10.04□□□□□ -0.8
USP53-209ENST00000514665 ADAMTS9Q9P2N4 1935 aa10.04□□□□□ -0.8
USP53-209ENST00000514665 C1orf159Q96HA4 380 aa10.04□□□□□ -0.8
USP53-209ENST00000514665 RITA1Q96K30 269 aa10.04□□□□□ -0.8
USP53-209ENST00000514665 PGPEP1Q9NXJ5 209 aa10.04□□□□□ -0.8
USP53-209ENST00000514665 JMJD1CQ15652 2540 aa10.04□□□□□ -0.8
USP53-209ENST00000514665 PATE2Q6UY27 113 aa10.03□□□□□ -0.8
USP53-209ENST00000514665 NEGR1Q7Z3B1 354 aa10.03□□□□□ -0.8
USP53-209ENST00000514665 MRPL52Q86TS9 123 aaKnown RBP10.03□□□□□ -0.8
USP53-209ENST00000514665 MTURNQ8N3F0 131 aa10.03□□□□□ -0.8
USP53-209ENST00000514665 PRSS33Q8NF86 280 aa10.03□□□□□ -0.8
USP53-209ENST00000514665 SIGMAR1Q99720 223 aa10.03□□□□□ -0.8
USP53-209ENST00000514665 IGKV1OR2-108A0A075B7D4 117 aa10.03□□□□□ -0.8
USP53-209ENST00000514665 SHISA9B4DS77 424 aa10.03□□□□□ -0.8
USP53-209ENST00000514665 FRMD6-AS1P0C7T7 363 aa10.03□□□□□ -0.8
USP53-209ENST00000514665 FAM120AOSQ5T036 256 aa10.03□□□□□ -0.8
USP53-209ENST00000514665 TEX43Q6ZNM6 134 aa10.03□□□□□ -0.8
USP53-209ENST00000514665 TANC2Q9HCD6 1990 aa10.03□□□□□ -0.8
USP53-209ENST00000514665 OBSL1O75147 1896 aa10.03□□□□□ -0.8
USP53-209ENST00000514665 KMT2EQ8IZD2 1858 aa10.03□□□□□ -0.8
USP53-209ENST00000514665 MSMBP08118 114 aa10.03□□□□□ -0.8
USP53-209ENST00000514665 NSUN5P1Q3KNT7 163 aa10.03□□□□□ -0.8
USP53-209ENST00000514665 Q5PR19 223 aa10.03□□□□□ -0.8
USP53-209ENST00000514665 C10orf126Q8N4M7 172 aa10.03□□□□□ -0.8
USP53-209ENST00000514665 SPXQ9BT56 116 aa10.03□□□□□ -0.8
USP53-209ENST00000514665 ZFYVE26Q68DK2 2539 aa10.03□□□□□ -0.8
USP53-209ENST00000514665 IGHV1-69DA0A0B4J2H0 117 aa10.03□□□□□ -0.8
USP53-209ENST00000514665 IGHV2-70DA0A0C4DH43 119 aa10.03□□□□□ -0.8
USP53-209ENST00000514665 SPRY2O43597 315 aa10.03□□□□□ -0.8
USP53-209ENST00000514665 IGHV1-69P01742 117 aa10.03□□□□□ -0.8
USP53-209ENST00000514665 ESDP10768 282 aa10.03□□□□□ -0.8
USP53-209ENST00000514665 SPRY4Q9C004 299 aa10.03□□□□□ -0.8
USP53-209ENST00000514665 RANBP2P49792 3224 aaKnown RBP10.02□□□□□ -0.8
USP53-209ENST00000514665 LINC01549A6NIU2 74 aa10.02□□□□□ -0.81
USP53-209ENST00000514665 SAP30O75446 220 aa10.02□□□□□ -0.81
USP53-209ENST00000514665 IGKV1-17P01599 117 aa10.02□□□□□ -0.81
USP53-209ENST00000514665 CRIP3Q6Q6R5 217 aa10.02□□□□□ -0.81
USP53-209ENST00000514665 SEM1Q6ZVN7 128 aa10.02□□□□□ -0.81
USP53-209ENST00000514665 KLHL30-AS1Q8NEE0 82 aa10.02□□□□□ -0.81
USP53-209ENST00000514665 GTSF1LQ9H1H1 148 aa10.02□□□□□ -0.81
USP53-209ENST00000514665 TMEM238C9JI98 176 aa10.02□□□□□ -0.81
USP53-209ENST00000514665 IGFL2Q6UWQ7 119 aa10.02□□□□□ -0.81
USP53-209ENST00000514665 KLK9Q9UKQ9 250 aa10.02□□□□□ -0.81
USP53-209ENST00000514665 TP53TG1Q9Y2A0 90 aa10.02□□□□□ -0.81
USP53-209ENST00000514665 ADARB2-AS1A8MUL3 147 aa10.01□□□□□ -0.81
USP53-209ENST00000514665 RNF223E7ERA6 249 aa10.01□□□□□ -0.81
USP53-209ENST00000514665 MRPL35Q9NZE8 188 aaKnown RBP10.01□□□□□ -0.81
USP53-209ENST00000514665 ZNF106Q9H2Y7 1883 aaKnown RBP10.01□□□□□ -0.81
USP53-209ENST00000514665 TRAV12-2A0A075B6T6 113 aa10.01□□□□□ -0.81
USP53-209ENST00000514665 DSCR9P59020 149 aa10.01□□□□□ -0.81
USP53-209ENST00000514665 ANXA2RQ3ZCQ2 193 aa10.01□□□□□ -0.81
USP53-209ENST00000514665 DTX2Q86UW9 622 aa10.01□□□□□ -0.81
USP53-209ENST00000514665 TRAV13-1A0A0B4J241 112 aa10.01□□□□□ -0.81
USP53-209ENST00000514665 E7EUB6 86 aa10.01□□□□□ -0.81
USP53-209ENST00000514665 PROP1O75360 226 aa10.01□□□□□ -0.81
USP53-209ENST00000514665 CHD8Q9HCK8 2581 aa10.01□□□□□ -0.81
USP53-209ENST00000514665 M0R2P5 195 aa10□□□□□ -0.81
USP53-209ENST00000514665 LTAP01374 205 aa10□□□□□ -0.81
USP53-209ENST00000514665 RPL35AP18077 110 aaKnown RBP10□□□□□ -0.81
USP53-209ENST00000514665 ZNF625Q96I27 306 aaPredicted RBP10□□□□□ -0.81
USP53-209ENST00000514665 MRPL36Q9P0J6 103 aaKnown RBP10□□□□□ -0.81
USP53-209ENST00000514665 RPL36AP83881 106 aaKnown RBP10□□□□□ -0.81
USP53-209ENST00000514665 RPL36ALQ969Q0 106 aaKnown RBP10□□□□□ -0.81
USP53-209ENST00000514665 F6UB75 175 aa10□□□□□ -0.81
USP53-209ENST00000514665 EGR2P11161 476 aaPredicted RBP10□□□□□ -0.81
USP53-209ENST00000514665 SLC25A16P16260 332 aa10□□□□□ -0.81
USP53-209ENST00000514665 ZNF415Q09FC8 603 aa10□□□□□ -0.81
USP53-209ENST00000514665 C11orf1Q9H5F2 150 aa10□□□□□ -0.81
USP53-209ENST00000514665 LINC00158P58513 81 aa9.99□□□□□ -0.81
USP53-209ENST00000514665 CFAP161Q6P656 301 aa9.99□□□□□ -0.81
USP53-209ENST00000514665 DYNAPQ8N1N2 210 aa9.99□□□□□ -0.81
USP53-209ENST00000514665 Q8N8P6 123 aa9.99□□□□□ -0.81
USP53-209ENST00000514665 PLEKHB2Q96CS7 222 aa9.99□□□□□ -0.81
USP53-209ENST00000514665 ABCA12Q86UK0 2595 aa9.99□□□□□ -0.81
USP53-209ENST00000514665 COX8AP10176 69 aa9.99□□□□□ -0.81
USP53-209ENST00000514665 LINC00173Q6ZV60 143 aa9.99□□□□□ -0.81
USP53-209ENST00000514665 AGPAT4-IT1Q9H0P7 198 aa9.99□□□□□ -0.81
USP53-209ENST00000514665 C11orf68Q9H3H3 251 aaKnown RBP9.99□□□□□ -0.81
USP53-209ENST00000514665 DKK2Q9UBU2 259 aa9.99□□□□□ -0.81
USP53-209ENST00000514665 SPTBN4Q9H254 2564 aa9.99□□□□□ -0.81
USP53-209ENST00000514665 FAM167A-AS1Q96KT0 104 aa9.99□□□□□ -0.81
USP53-209ENST00000514665 XCL2Q9UBD3 114 aa9.99□□□□□ -0.81
USP53-209ENST00000514665 SDHAF1A6NFY7 115 aa9.99□□□□□ -0.81
USP53-209ENST00000514665 DLX4Q92988 240 aaPredicted RBP9.99□□□□□ -0.81
USP53-209ENST00000514665 CST9LQ9H4G1 147 aa9.99□□□□□ -0.81
USP53-209ENST00000514665 GATA1P15976 413 aaPredicted RBP9.98□□□□□ -0.81
USP53-209ENST00000514665 UTF1Q5T230 341 aa9.98□□□□□ -0.81
USP53-209ENST00000514665 ADAMTSL5Q6ZMM2 481 aa9.98□□□□□ -0.81
USP53-209ENST00000514665 IGHV3-16A0A0C4DH30 117 aa9.98□□□□□ -0.81
USP53-209ENST00000514665 K7EIM0 57 aa9.98□□□□□ -0.81
USP53-209ENST00000514665 LGALS9BQ3B8N2 356 aa9.98□□□□□ -0.81
USP53-209ENST00000514665 LGALS9CQ6DKI2 356 aa9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms