RNA–Protein interactions for RNA: ENST00000506690.1

SQSTM1-211, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 2,405 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-211ENST00000506690 HOXA3O43365 443 aaPredicted RBP13.23□□□□□ -0.29
SQSTM1-211ENST00000506690 ROS1P08922 2347 aa13.23□□□□□ -0.29
SQSTM1-211ENST00000506690 HLA-DMBP28068 263 aa13.23□□□□□ -0.29
SQSTM1-211ENST00000506690 IL17RELQ6ZVW7 336 aa13.23□□□□□ -0.29
SQSTM1-211ENST00000506690 CYSLTR1Q9Y271 337 aa13.23□□□□□ -0.29
SQSTM1-211ENST00000506690 MFAP4P55083 255 aa13.22□□□□□ -0.29
SQSTM1-211ENST00000506690 TRAV12-1A0A0B4J245 112 aa13.22□□□□□ -0.29
SQSTM1-211ENST00000506690 F8VRH5 84 aa13.22□□□□□ -0.29
SQSTM1-211ENST00000506690 LY6LH3BQJ8 138 aa13.22□□□□□ -0.29
SQSTM1-211ENST00000506690 TRGV3P03979 118 aa13.22□□□□□ -0.29
SQSTM1-211ENST00000506690 LCNL1Q6ZST4 164 aa13.22□□□□□ -0.29
SQSTM1-211ENST00000506690 NFE4Q86UQ8 179 aa13.22□□□□□ -0.29
SQSTM1-211ENST00000506690 ZGRF1Q86YA3 2104 aa13.22□□□□□ -0.29
SQSTM1-211ENST00000506690 FANCD2OSQ96PS1 177 aa13.22□□□□□ -0.29
SQSTM1-211ENST00000506690 RIF1Q5UIP0 2472 aaKnown RBP13.22□□□□□ -0.29
SQSTM1-211ENST00000506690 IGLV11-55A0A075B6I3 123 aa13.21□□□□□ -0.29
SQSTM1-211ENST00000506690 SPINK8P0C7L1 97 aa13.21□□□□□ -0.29
SQSTM1-211ENST00000506690 PGPEP1Q9NXJ5 209 aa13.21□□□□□ -0.29
SQSTM1-211ENST00000506690 DMXL2Q8TDJ6 3036 aa13.21□□□□□ -0.29
SQSTM1-211ENST00000506690 OR11H12B2RN74 326 aa13.21□□□□□ -0.3
SQSTM1-211ENST00000506690 H7C1H1 209 aa13.21□□□□□ -0.3
SQSTM1-211ENST00000506690 EFNA4P52798 201 aa13.21□□□□□ -0.3
SQSTM1-211ENST00000506690 FHL3Q13643 280 aa13.21□□□□□ -0.3
SQSTM1-211ENST00000506690 DYNAPQ8N1N2 210 aa13.21□□□□□ -0.3
SQSTM1-211ENST00000506690 OR11H1Q8NG94 326 aa13.21□□□□□ -0.3
SQSTM1-211ENST00000506690 OR11H2Q8NH07 326 aa13.21□□□□□ -0.3
SQSTM1-211ENST00000506690 DLX4Q92988 240 aaPredicted RBP13.21□□□□□ -0.3
SQSTM1-211ENST00000506690 CUL9Q8IWT3 2517 aa13.2□□□□□ -0.3
SQSTM1-211ENST00000506690 BOD1L1Q8NFC6 3051 aa13.2□□□□□ -0.3
SQSTM1-211ENST00000506690 CFHR4Q92496 578 aa13.2□□□□□ -0.3
SQSTM1-211ENST00000506690 RALYQ9UKM9 306 aaKnown RBP13.2□□□□□ -0.3
SQSTM1-211ENST00000506690 IGKV3D-20A0A0C4DH25 116 aa13.2□□□□□ -0.3
SQSTM1-211ENST00000506690 COX7A1P24310 79 aa13.2□□□□□ -0.3
SQSTM1-211ENST00000506690 BSPH1Q075Z2 132 aa13.2□□□□□ -0.3
SQSTM1-211ENST00000506690 LGALS1P09382 135 aaKnown RBP13.19□□□□□ -0.3
SQSTM1-211ENST00000506690 ERCC8Q13216 396 aa13.19□□□□□ -0.3
SQSTM1-211ENST00000506690 TRAV26-2A0A0B4J265 109 aa13.19□□□□□ -0.3
SQSTM1-211ENST00000506690 TIMM23O14925 209 aa13.19□□□□□ -0.3
SQSTM1-211ENST00000506690 NBR2O15453 112 aa13.19□□□□□ -0.3
SQSTM1-211ENST00000506690 MT-ATP8P03928 68 aa13.19□□□□□ -0.3
SQSTM1-211ENST00000506690 RNASE6Q93091 150 aaKnown RBP13.19□□□□□ -0.3
SQSTM1-211ENST00000506690 Q6ZUT4 128 aa13.18□□□□□ -0.3
SQSTM1-211ENST00000506690 ZNF292O60281 2723 aa13.18□□□□□ -0.3
SQSTM1-211ENST00000506690 PRAC2D3DTV9 90 aa13.18□□□□□ -0.3
SQSTM1-211ENST00000506690 C21orf62Q9NYP8 219 aa13.18□□□□□ -0.3
SQSTM1-211ENST00000506690 C11orf21Q9P2W6 132 aa13.18□□□□□ -0.3
SQSTM1-211ENST00000506690 UBE2D1P51668 147 aa13.17□□□□□ -0.3
SQSTM1-211ENST00000506690 XGP55808 180 aa13.17□□□□□ -0.3
SQSTM1-211ENST00000506690 PKDREJQ9NTG1 2253 aa13.17□□□□□ -0.3
SQSTM1-211ENST00000506690 IGHV7-4-1A0A0J9YVY3 117 aa13.17□□□□□ -0.3
SQSTM1-211ENST00000506690 TSPAN13O95857 204 aa13.17□□□□□ -0.3
SQSTM1-211ENST00000506690 NPBQ8NG41 125 aa13.17□□□□□ -0.3
SQSTM1-211ENST00000506690 RBAKDNA6NC62 111 aa13.16□□□□□ -0.3
SQSTM1-211ENST00000506690 LINC01549A6NIU2 74 aa13.15□□□□□ -0.3
SQSTM1-211ENST00000506690 A6NJY4 79 aa13.15□□□□□ -0.3
SQSTM1-211ENST00000506690 UBE2D3P61077 147 aa13.15□□□□□ -0.3
SQSTM1-211ENST00000506690 UBE2D2P62837 147 aa13.15□□□□□ -0.3
SQSTM1-211ENST00000506690 TMEM78Q5T7P6 136 aa13.15□□□□□ -0.3
SQSTM1-211ENST00000506690 NEXN-AS1Q8NBZ9 246 aa13.15□□□□□ -0.3
SQSTM1-211ENST00000506690 GLMPQ8WWB7 406 aa13.15□□□□□ -0.3
SQSTM1-211ENST00000506690 IGFBPL1Q8WX77 278 aa13.15□□□□□ -0.3
SQSTM1-211ENST00000506690 IGHV4-4A0A075B6R2 117 aa13.15□□□□□ -0.3
SQSTM1-211ENST00000506690 CTSGP08311 255 aa13.15□□□□□ -0.3
SQSTM1-211ENST00000506690 CARD19Q96LW7 228 aa13.14□□□□□ -0.31
SQSTM1-211ENST00000506690 SMIM2Q9BVW6 85 aa13.14□□□□□ -0.31
SQSTM1-211ENST00000506690 RAXQ9Y2V3 346 aa13.14□□□□□ -0.31
SQSTM1-211ENST00000506690 IGHV3-23P01764 117 aa13.14□□□□□ -0.31
SQSTM1-211ENST00000506690 PSMB2P49721 201 aa13.14□□□□□ -0.31
SQSTM1-211ENST00000506690 RP1L1Q8IWN7 2480 aaPredicted RBP13.14□□□□□ -0.31
SQSTM1-211ENST00000506690 OR11H6Q8NGC7 330 aa13.14□□□□□ -0.31
SQSTM1-211ENST00000506690 PPDPFLQ8WWR9 84 aa13.14□□□□□ -0.31
SQSTM1-211ENST00000506690 UFC1Q9Y3C8 167 aa13.14□□□□□ -0.31
SQSTM1-211ENST00000506690 ZFP2Q6ZN57 461 aa13.13□□□□□ -0.31
SQSTM1-211ENST00000506690 TOMM6Q96B49 74 aa13.13□□□□□ -0.31
SQSTM1-211ENST00000506690 ERG28Q9UKR5 140 aa13.13□□□□□ -0.31
SQSTM1-211ENST00000506690 SLC25A16P16260 332 aa13.13□□□□□ -0.31
SQSTM1-211ENST00000506690 TEN1Q86WV5 123 aa13.13□□□□□ -0.31
SQSTM1-211ENST00000506690 PTH2Q96A98 100 aa13.13□□□□□ -0.31
SQSTM1-211ENST00000506690 PRADC1Q9BSG0 188 aa13.13□□□□□ -0.31
SQSTM1-211ENST00000506690 DYNLRB1Q9NP97 96 aa13.13□□□□□ -0.31
SQSTM1-211ENST00000506690 GVINP1Q7Z2Y8 2422 aa13.13□□□□□ -0.31
SQSTM1-211ENST00000506690 C5orf64Q2M2E5 130 aa13.12□□□□□ -0.31
SQSTM1-211ENST00000506690 SCGB3A1Q96QR1 104 aa13.12□□□□□ -0.31
SQSTM1-211ENST00000506690 CD7P09564 240 aa13.12□□□□□ -0.31
SQSTM1-211ENST00000506690 COX6B1P14854 86 aa13.12□□□□□ -0.31
SQSTM1-211ENST00000506690 ORMDL2Q53FV1 153 aa13.12□□□□□ -0.31
SQSTM1-211ENST00000506690 RNF182Q8N6D2 247 aa13.12□□□□□ -0.31
SQSTM1-211ENST00000506690 VCX2Q9H322 139 aa13.12□□□□□ -0.31
SQSTM1-211ENST00000506690 LOC107984156A0A0G2JMH3 177 aa13.11□□□□□ -0.31
SQSTM1-211ENST00000506690 ARL17AQ8IVW1 177 aa13.11□□□□□ -0.31
SQSTM1-211ENST00000506690 AGPAT4-IT1Q9H0P7 198 aa13.11□□□□□ -0.31
SQSTM1-211ENST00000506690 PTPRZ1P23471 2315 aaPredicted RBP13.11□□□□□ -0.31
SQSTM1-211ENST00000506690 LAMA5O15230 3695 aa13.11□□□□□ -0.31
SQSTM1-211ENST00000506690 ZNF815PA8K554 130 aa13.11□□□□□ -0.31
SQSTM1-211ENST00000506690 NDPQ00604 133 aa13.11□□□□□ -0.31
SQSTM1-211ENST00000506690 SBSPONQ8IVN8 264 aa13.11□□□□□ -0.31
SQSTM1-211ENST00000506690 PLEKHB2Q96CS7 222 aa13.11□□□□□ -0.31
SQSTM1-211ENST00000506690 RNF183Q96D59 192 aa13.11□□□□□ -0.31
SQSTM1-211ENST00000506690 SLC50A1Q9BRV3 221 aa13.11□□□□□ -0.31
SQSTM1-211ENST00000506690 TACC2O95359 2948 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms