RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 K7EN84 100 aa6.38□□□□□ -1.39
USP54-215ENST00000497106 ERCC8Q13216 396 aa6.38□□□□□ -1.39
USP54-215ENST00000497106 IGFL4Q6B9Z1 124 aa6.38□□□□□ -1.39
USP54-215ENST00000497106 MYOZ3Q8TDC0 251 aa6.38□□□□□ -1.39
USP54-215ENST00000497106 IQCJQ1A5X6 159 aa6.38□□□□□ -1.39
USP54-215ENST00000497106 NUP35Q8NFH5 326 aa6.38□□□□□ -1.39
USP54-215ENST00000497106 PRSS3P2Q8NHM4 247 aa6.38□□□□□ -1.39
USP54-215ENST00000497106 AP1S3Q96PC3 154 aa6.38□□□□□ -1.39
USP54-215ENST00000497106 AGPAT4-IT1Q9H0P7 198 aa6.38□□□□□ -1.39
USP54-215ENST00000497106 ACTL10Q5JWF8 245 aa6.38□□□□□ -1.39
USP54-215ENST00000497106 ZC2HC1AQ96GY0 325 aa6.38□□□□□ -1.39
USP54-215ENST00000497106 DUX3Q96PT4 197 aa6.38□□□□□ -1.39
USP54-215ENST00000497106 PYGO2Q9BRQ0 406 aa6.38□□□□□ -1.39
USP54-215ENST00000497106 DEFB136Q30KP8 78 aa6.37□□□□□ -1.39
USP54-215ENST00000497106 VGLL1Q99990 258 aa6.37□□□□□ -1.39
USP54-215ENST00000497106 VCANP13611 3396 aa6.37□□□□□ -1.39
USP54-215ENST00000497106 APOHP02749 345 aaPredicted RBP6.37□□□□□ -1.39
USP54-215ENST00000497106 WIPF2Q8TF74 440 aaPredicted RBP6.37□□□□□ -1.39
USP54-215ENST00000497106 ORAOV1Q8WV07 137 aa6.37□□□□□ -1.39
USP54-215ENST00000497106 PRRC2AP48634 2157 aaKnown RBP6.37□□□□□ -1.39
USP54-215ENST00000497106 H7C1H1 209 aa6.37□□□□□ -1.39
USP54-215ENST00000497106 PDZD11Q5EBL8 140 aa6.37□□□□□ -1.39
USP54-215ENST00000497106 OR10J3Q5JRS4 329 aa6.37□□□□□ -1.39
USP54-215ENST00000497106 C8orf49Q96NF6 230 aa6.37□□□□□ -1.39
USP54-215ENST00000497106 C20orf144Q9BQM9 153 aa6.37□□□□□ -1.39
USP54-215ENST00000497106 K7EQG2 157 aa6.37□□□□□ -1.39
USP54-215ENST00000497106 MED14OSP0DP75 135 aa6.37□□□□□ -1.39
USP54-215ENST00000497106 CKS2P33552 79 aa6.37□□□□□ -1.39
USP54-215ENST00000497106 LINC01559Q495D7 138 aa6.37□□□□□ -1.39
USP54-215ENST00000497106 MAP1LC3AQ9H492 121 aa6.37□□□□□ -1.39
USP54-215ENST00000497106 SMAD5-AS1Q9Y6J3 95 aa6.37□□□□□ -1.39
USP54-215ENST00000497106 TET2Q6N021 2002 aaPredicted RBP6.36□□□□□ -1.39
USP54-215ENST00000497106 A0A1B0GV72 72 aa6.36□□□□□ -1.39
USP54-215ENST00000497106 IGKV3-20P01619 116 aa6.36□□□□□ -1.39
USP54-215ENST00000497106 ZNF415Q09FC8 603 aa6.36□□□□□ -1.39
USP54-215ENST00000497106 TMEM158Q8WZ71 300 aa6.36□□□□□ -1.39
USP54-215ENST00000497106 DLX4Q92988 240 aaPredicted RBP6.36□□□□□ -1.39
USP54-215ENST00000497106 LINC01587Q99440 93 aa6.36□□□□□ -1.39
USP54-215ENST00000497106 LRRK2Q5S007 2527 aa6.36□□□□□ -1.39
USP54-215ENST00000497106 NAV3Q8IVL0 2385 aa6.36□□□□□ -1.39
USP54-215ENST00000497106 F5H697 171 aa6.36□□□□□ -1.39
USP54-215ENST00000497106 RNASEKQ6P5S7 137 aaKnown RBP6.36□□□□□ -1.39
USP54-215ENST00000497106 MORN3Q6PF18 240 aaPredicted RBP6.36□□□□□ -1.39
USP54-215ENST00000497106 LAMTOR2Q9Y2Q5 125 aa6.36□□□□□ -1.39
USP54-215ENST00000497106 CD7P09564 240 aa6.36□□□□□ -1.39
USP54-215ENST00000497106 SMAGPQ0VAQ4 97 aa6.36□□□□□ -1.39
USP54-215ENST00000497106 TMEM256Q8N2U0 113 aa6.36□□□□□ -1.39
USP54-215ENST00000497106 OR4C5Q8NGB2 326 aa6.36□□□□□ -1.39
USP54-215ENST00000497106 MLST8Q9BVC4 326 aa6.36□□□□□ -1.39
USP54-215ENST00000497106 SIGLEC8Q9NYZ4 499 aa6.36□□□□□ -1.39
USP54-215ENST00000497106 HIVEP2P31629 2446 aa6.36□□□□□ -1.39
USP54-215ENST00000497106 SRIP30626 198 aa6.35□□□□□ -1.39
USP54-215ENST00000497106 ORMDL3Q8N138 153 aa6.35□□□□□ -1.39
USP54-215ENST00000497106 ABCA1O95477 2261 aa6.35□□□□□ -1.39
USP54-215ENST00000497106 TRBV20OR9-2A0A075B6H5 130 aa6.35□□□□□ -1.39
USP54-215ENST00000497106 GRIFINA4D1Z8 144 aa6.35□□□□□ -1.39
USP54-215ENST00000497106 MGPP08493 103 aa6.35□□□□□ -1.39
USP54-215ENST00000497106 HLA-DMBP28068 263 aa6.35□□□□□ -1.39
USP54-215ENST00000497106 LYZL1Q6UWQ5 148 aa6.35□□□□□ -1.39
USP54-215ENST00000497106 C19orf71A6NCJ1 209 aa6.35□□□□□ -1.39
USP54-215ENST00000497106 GZMBP10144 247 aa6.35□□□□□ -1.39
USP54-215ENST00000497106 C10orf99Q6UWK7 81 aa6.35□□□□□ -1.39
USP54-215ENST00000497106 MGAQ8IWI9 3026 aa6.35□□□□□ -1.39
USP54-215ENST00000497106 VPS13AQ96RL7 3174 aa6.35□□□□□ -1.39
USP54-215ENST00000497106 IGLV2-8P01709 118 aa6.34□□□□□ -1.39
USP54-215ENST00000497106 BATFQ16520 125 aa6.34□□□□□ -1.39
USP54-215ENST00000497106 HSPB8Q9UJY1 196 aa6.34□□□□□ -1.39
USP54-215ENST00000497106 IGHV1OR15-1A0A075B7D0 117 aa6.34□□□□□ -1.39
USP54-215ENST00000497106 A0A0J9YX75 114 aa6.34□□□□□ -1.39
USP54-215ENST00000497106 CA1P00915 261 aaPredicted RBP6.34□□□□□ -1.39
USP54-215ENST00000497106 RRN3P1Q2M238 152 aa6.34□□□□□ -1.39
USP54-215ENST00000497106 DEFB114Q30KQ6 69 aa6.34□□□□□ -1.39
USP54-215ENST00000497106 K7ERU9 68 aa6.34□□□□□ -1.39
USP54-215ENST00000497106 ZNF705DP0CH99 300 aaPredicted RBP6.34□□□□□ -1.39
USP54-215ENST00000497106 ZNF705BP0CI00 300 aaPredicted RBP6.34□□□□□ -1.39
USP54-215ENST00000497106 NTF3P20783 257 aa6.34□□□□□ -1.39
USP54-215ENST00000497106 UBE2V1Q13404 147 aa6.34□□□□□ -1.39
USP54-215ENST00000497106 PRELID3AQ96N28 172 aa6.34□□□□□ -1.39
USP54-215ENST00000497106 HIST1H2BLQ99880 126 aa6.34□□□□□ -1.39
USP54-215ENST00000497106 TRAV8-2A0A0B4J237 113 aa6.34□□□□□ -1.4
USP54-215ENST00000497106 LINC01549A6NIU2 74 aa6.34□□□□□ -1.4
USP54-215ENST00000497106 CSN3P07498 182 aa6.34□□□□□ -1.4
USP54-215ENST00000497106 TMEM136Q6ZRR5 245 aa6.34□□□□□ -1.4
USP54-215ENST00000497106 ESM1Q9NQ30 184 aa6.34□□□□□ -1.4
USP54-215ENST00000497106 A0A0C4DFX4 3053 aa6.34□□□□□ -1.4
USP54-215ENST00000497106 HIST1H2BKO60814 126 aa6.33□□□□□ -1.4
USP54-215ENST00000497106 HIST1H2BJP06899 126 aa6.33□□□□□ -1.4
USP54-215ENST00000497106 HIST1H2BOP23527 126 aa6.33□□□□□ -1.4
USP54-215ENST00000497106 HIST1H2BBP33778 126 aa6.33□□□□□ -1.4
USP54-215ENST00000497106 AMTP48728 403 aa6.33□□□□□ -1.4
USP54-215ENST00000497106 HIST1H2BDP58876 126 aa6.33□□□□□ -1.4
USP54-215ENST00000497106 HIST1H2BCP62807 126 aa6.33□□□□□ -1.4
USP54-215ENST00000497106 KRTAP1-1Q07627 177 aa6.33□□□□□ -1.4
USP54-215ENST00000497106 HIST2H2BEQ16778 126 aa6.33□□□□□ -1.4
USP54-215ENST00000497106 CD300EQ496F6 205 aaPredicted RBP6.33□□□□□ -1.4
USP54-215ENST00000497106 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.33□□□□□ -1.4
USP54-215ENST00000497106 MUC21Q5SSG8 566 aa6.33□□□□□ -1.4
USP54-215ENST00000497106 HIST1H2BHQ93079 126 aa6.33□□□□□ -1.4
USP54-215ENST00000497106 HIST1H2BNQ99877 126 aa6.33□□□□□ -1.4
USP54-215ENST00000497106 HIST1H2BMQ99879 126 aa6.33□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms