RNA–Protein interactions for RNA: ENST00000490135.6

SYNE1-228, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 5,707 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-228ENST00000490135 CFAP126Q5VTH2 177 aa5.81□□□□□ -1.48
SYNE1-228ENST00000490135 CLPSL2Q6UWE3 100 aa5.81□□□□□ -1.48
SYNE1-228ENST00000490135 PTPRZ1P23471 2315 aaPredicted RBP5.8□□□□□ -1.48
SYNE1-228ENST00000490135 BUB3O43684 328 aa5.8□□□□□ -1.48
SYNE1-228ENST00000490135 FHL1Q13642 323 aa5.8□□□□□ -1.48
SYNE1-228ENST00000490135 C10orf55Q5SWW7 151 aa5.8□□□□□ -1.48
SYNE1-228ENST00000490135 TMEM200BQ69YZ2 307 aa5.8□□□□□ -1.48
SYNE1-228ENST00000490135 Q6ZR03 302 aa5.8□□□□□ -1.48
SYNE1-228ENST00000490135 PRDM6Q9NQX0 595 aa5.8□□□□□ -1.48
SYNE1-228ENST00000490135 KLK9Q9UKQ9 250 aa5.8□□□□□ -1.48
SYNE1-228ENST00000490135 STRCP1A6NGW2 1772 aa5.8□□□□□ -1.48
SYNE1-228ENST00000490135 IGHV4-4A0A075B6R2 117 aa5.8□□□□□ -1.48
SYNE1-228ENST00000490135 IGHV3-38A0A0C4DH36 116 aa5.8□□□□□ -1.48
SYNE1-228ENST00000490135 A0A1W2PR77 199 aa5.8□□□□□ -1.48
SYNE1-228ENST00000490135 NDUFC2-KCTD14E9PQ53 114 aa5.8□□□□□ -1.48
SYNE1-228ENST00000490135 SPINK13Q1W4C9 94 aa5.8□□□□□ -1.48
SYNE1-228ENST00000490135 CFC1BP0CG36 223 aa5.8□□□□□ -1.48
SYNE1-228ENST00000490135 CFC1P0CG37 223 aa5.8□□□□□ -1.48
SYNE1-228ENST00000490135 LINC00310P59036 64 aa5.8□□□□□ -1.48
SYNE1-228ENST00000490135 CR1LQ2VPA4 569 aa5.8□□□□□ -1.48
SYNE1-228ENST00000490135 MUSTN1Q8IVN3 82 aa5.8□□□□□ -1.48
SYNE1-228ENST00000490135 CDIP1Q9H305 208 aa5.8□□□□□ -1.48
SYNE1-228ENST00000490135 MRPL35Q9NZE8 188 aaKnown RBP5.8□□□□□ -1.48
SYNE1-228ENST00000490135 ZSWIM8A7E2V4 1837 aa5.8□□□□□ -1.48
SYNE1-228ENST00000490135 TFF1P04155 84 aa5.8□□□□□ -1.48
SYNE1-228ENST00000490135 C2orf66Q6UXQ4 117 aa5.8□□□□□ -1.48
SYNE1-228ENST00000490135 TDRD15B5MCY1 1934 aaKnown RBP5.8□□□□□ -1.48
SYNE1-228ENST00000490135 IGHV1OR15-1A0A075B7D0 117 aa5.79□□□□□ -1.48
SYNE1-228ENST00000490135 TRBV10-2A0A0K0K1G8 114 aa5.79□□□□□ -1.48
SYNE1-228ENST00000490135 LINC01620Q4KN68 170 aa5.79□□□□□ -1.48
SYNE1-228ENST00000490135 C9orf47Q6ZRZ4 202 aa5.79□□□□□ -1.48
SYNE1-228ENST00000490135 IGFBPL1Q8WX77 278 aa5.79□□□□□ -1.48
SYNE1-228ENST00000490135 CFHR4Q92496 578 aa5.79□□□□□ -1.48
SYNE1-228ENST00000490135 PRRC2BQ5JSZ5 2229 aaKnown RBP5.79□□□□□ -1.48
SYNE1-228ENST00000490135 TRAV12-2A0A075B6T6 113 aa5.79□□□□□ -1.48
SYNE1-228ENST00000490135 IGKV1-39P01597 117 aa5.79□□□□□ -1.48
SYNE1-228ENST00000490135 IGKV1D-39P04432 117 aa5.79□□□□□ -1.48
SYNE1-228ENST00000490135 IGLV3-21P80748 117 aaPredicted RBP5.79□□□□□ -1.48
SYNE1-228ENST00000490135 CKAP5Q14008 2032 aa5.79□□□□□ -1.48
SYNE1-228ENST00000490135 TTTY13Q9BZ97 58 aa5.79□□□□□ -1.48
SYNE1-228ENST00000490135 TEX22C9J3V5 150 aa5.79□□□□□ -1.48
SYNE1-228ENST00000490135 Q6ZS92 163 aa5.79□□□□□ -1.48
SYNE1-228ENST00000490135 VSIG2Q96IQ7 327 aa5.79□□□□□ -1.48
SYNE1-228ENST00000490135 UTRNP46939 3433 aa5.79□□□□□ -1.48
SYNE1-228ENST00000490135 COX7CP15954 63 aa5.79□□□□□ -1.48
SYNE1-228ENST00000490135 C4orf26Q17RF5 130 aa5.79□□□□□ -1.48
SYNE1-228ENST00000490135 C17orf77Q96MU5 243 aa5.79□□□□□ -1.48
SYNE1-228ENST00000490135 SMCHD1A6NHR9 2005 aa5.79□□□□□ -1.48
SYNE1-228ENST00000490135 APC2O95996 2303 aa5.79□□□□□ -1.48
SYNE1-228ENST00000490135 ICE1Q9Y2F5 2266 aa5.78□□□□□ -1.48
SYNE1-228ENST00000490135 KIAA1217Q5T5P2 1943 aa5.78□□□□□ -1.48
SYNE1-228ENST00000490135 RNF223E7ERA6 249 aa5.78□□□□□ -1.48
SYNE1-228ENST00000490135 BUB1B-PAK6H3BSN5 160 aa5.78□□□□□ -1.48
SYNE1-228ENST00000490135 MRPL51Q4U2R6 128 aaKnown RBP5.78□□□□□ -1.48
SYNE1-228ENST00000490135 Q8N8P6 123 aa5.78□□□□□ -1.48
SYNE1-228ENST00000490135 H3BQ85 93 aa5.78□□□□□ -1.48
SYNE1-228ENST00000490135 TMEM178BH3BS89 294 aa5.78□□□□□ -1.48
SYNE1-228ENST00000490135 XCL1P47992 114 aa5.78□□□□□ -1.48
SYNE1-228ENST00000490135 CCL18P55774 89 aa5.78□□□□□ -1.48
SYNE1-228ENST00000490135 NREPQ16612 68 aa5.78□□□□□ -1.48
SYNE1-228ENST00000490135 FANCD2OSQ96PS1 177 aa5.78□□□□□ -1.48
SYNE1-228ENST00000490135 MRPL36Q9P0J6 103 aaKnown RBP5.78□□□□□ -1.48
SYNE1-228ENST00000490135 RHOHQ15669 191 aa5.78□□□□□ -1.48
SYNE1-228ENST00000490135 Q86TA4 180 aa5.78□□□□□ -1.48
SYNE1-228ENST00000490135 CRYGBP07316 175 aa5.78□□□□□ -1.48
SYNE1-228ENST00000490135 FGFBP3Q8TAT2 258 aa5.78□□□□□ -1.48
SYNE1-228ENST00000490135 LINC00526Q96FQ7 95 aa5.78□□□□□ -1.48
SYNE1-228ENST00000490135 SPRY4Q9C004 299 aa5.78□□□□□ -1.48
SYNE1-228ENST00000490135 C11orf1Q9H5F2 150 aa5.78□□□□□ -1.48
SYNE1-228ENST00000490135 TEX49A0A1B0GTD5 131 aa5.77□□□□□ -1.48
SYNE1-228ENST00000490135 SDHAF1A6NFY7 115 aa5.77□□□□□ -1.48
SYNE1-228ENST00000490135 IGKV4-1P06312 121 aa5.77□□□□□ -1.48
SYNE1-228ENST00000490135 MPLKIPQ8TAP9 179 aa5.77□□□□□ -1.48
SYNE1-228ENST00000490135 CAMK2N2Q96S95 79 aa5.77□□□□□ -1.48
SYNE1-228ENST00000490135 FAM240AA0A1B0GVK7 77 aa5.77□□□□□ -1.49
SYNE1-228ENST00000490135 PDE6HQ13956 83 aa5.77□□□□□ -1.49
SYNE1-228ENST00000490135 EFNA2O43921 213 aa5.77□□□□□ -1.49
SYNE1-228ENST00000490135 PSMB8P28062 276 aa5.77□□□□□ -1.49
SYNE1-228ENST00000490135 ZNF493Q6ZR52 646 aa5.77□□□□□ -1.49
SYNE1-228ENST00000490135 SIRPDQ9H106 197 aa5.77□□□□□ -1.49
SYNE1-228ENST00000490135 A0A0J9YY99 117 aa5.77□□□□□ -1.49
SYNE1-228ENST00000490135 H0Y9J4 135 aa5.77□□□□□ -1.49
SYNE1-228ENST00000490135 BAALC-AS2P0C853 105 aa5.77□□□□□ -1.49
SYNE1-228ENST00000490135 LINC00643Q86TS7 51 aa5.77□□□□□ -1.49
SYNE1-228ENST00000490135 GPHB5Q86YW7 130 aa5.77□□□□□ -1.49
SYNE1-228ENST00000490135 SPTSSBQ8NFR3 76 aa5.77□□□□□ -1.49
SYNE1-228ENST00000490135 PRORYQ9H606 182 aa5.77□□□□□ -1.49
SYNE1-228ENST00000490135 KLK5Q9Y337 293 aaPredicted RBP5.77□□□□□ -1.49
SYNE1-228ENST00000490135 SPAG17Q6Q759 2223 aa5.77□□□□□ -1.49
SYNE1-228ENST00000490135 IGKV3D-7A0A0C4DH55 119 aa5.77□□□□□ -1.49
SYNE1-228ENST00000490135 SAA4P35542 130 aa5.77□□□□□ -1.49
SYNE1-228ENST00000490135 AJUBAQ96IF1 538 aa5.77□□□□□ -1.49
SYNE1-228ENST00000490135 PLXNA3P51805 1871 aa5.77□□□□□ -1.49
SYNE1-228ENST00000490135 MCM3APO60318 1980 aa5.77□□□□□ -1.49
SYNE1-228ENST00000490135 SP5Q6BEB4 398 aaPredicted RBP5.76□□□□□ -1.49
SYNE1-228ENST00000490135 ZFP2Q6ZN57 461 aa5.76□□□□□ -1.49
SYNE1-228ENST00000490135 TMEM75Q8N9X5 138 aa5.76□□□□□ -1.49
SYNE1-228ENST00000490135 MSMBP08118 114 aa5.76□□□□□ -1.49
SYNE1-228ENST00000490135 Q6ZQT7 251 aa5.76□□□□□ -1.49
SYNE1-228ENST00000490135 Q96MF0 132 aa5.76□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms