RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 SMCPP49901 116 aaPredicted RBP4.89□□□□□ -1.63
VPS13D-209ENST00000487188 RPL32P62910 135 aaKnown RBP4.89□□□□□ -1.63
VPS13D-209ENST00000487188 MSMPQ1L6U9 139 aa4.89□□□□□ -1.63
VPS13D-209ENST00000487188 ORMDL2Q53FV1 153 aa4.89□□□□□ -1.63
VPS13D-209ENST00000487188 TMEM200BQ69YZ2 307 aa4.89□□□□□ -1.63
VPS13D-209ENST00000487188 ZNF71Q9NQZ8 489 aaPredicted RBP4.89□□□□□ -1.63
VPS13D-209ENST00000487188 SIGLEC9Q9Y336 463 aa4.89□□□□□ -1.63
VPS13D-209ENST00000487188 LAMA1P25391 3075 aa4.88□□□□□ -1.63
VPS13D-209ENST00000487188 CCDC179H3BU77 68 aa4.88□□□□□ -1.63
VPS13D-209ENST00000487188 FCN3O75636 299 aa4.88□□□□□ -1.63
VPS13D-209ENST00000487188 IGKV1-17P01599 117 aa4.88□□□□□ -1.63
VPS13D-209ENST00000487188 S100A4P26447 101 aaKnown RBP4.88□□□□□ -1.63
VPS13D-209ENST00000487188 EMP1P54849 157 aa4.88□□□□□ -1.63
VPS13D-209ENST00000487188 PRB3Q04118 309 aaPredicted RBP4.88□□□□□ -1.63
VPS13D-209ENST00000487188 HES1Q14469 280 aa4.88□□□□□ -1.63
VPS13D-209ENST00000487188 PMS2CLQ68D20 193 aa4.88□□□□□ -1.63
VPS13D-209ENST00000487188 MDS2Q8NDY4 140 aa4.88□□□□□ -1.63
VPS13D-209ENST00000487188 RNF185Q96GF1 192 aa4.88□□□□□ -1.63
VPS13D-209ENST00000487188 RITA1Q96K30 269 aa4.88□□□□□ -1.63
VPS13D-209ENST00000487188 WNK2Q9Y3S1 2297 aa4.88□□□□□ -1.63
VPS13D-209ENST00000487188 IGLV1-44P01699 117 aa4.88□□□□□ -1.63
VPS13D-209ENST00000487188 FAM110AQ9BQ89 295 aa4.88□□□□□ -1.63
VPS13D-209ENST00000487188 CEACAM4O75871 244 aa4.88□□□□□ -1.63
VPS13D-209ENST00000487188 ASIPP42127 132 aa4.88□□□□□ -1.63
VPS13D-209ENST00000487188 MFAP4P55083 255 aa4.88□□□□□ -1.63
VPS13D-209ENST00000487188 PAX8Q06710 450 aa4.88□□□□□ -1.63
VPS13D-209ENST00000487188 ATP1A1-AS1Q5TC04 95 aa4.88□□□□□ -1.63
VPS13D-209ENST00000487188 RAX2Q96IS3 184 aa4.88□□□□□ -1.63
VPS13D-209ENST00000487188 CARD19Q96LW7 228 aa4.88□□□□□ -1.63
VPS13D-209ENST00000487188 DYNLRB1Q9NP97 96 aa4.88□□□□□ -1.63
VPS13D-209ENST00000487188 PKDREJQ9NTG1 2253 aa4.87□□□□□ -1.63
VPS13D-209ENST00000487188 IGHV3OR16-8A0A075B7F1 116 aa4.87□□□□□ -1.63
VPS13D-209ENST00000487188 IGHV4-39P01824 125 aa4.87□□□□□ -1.63
VPS13D-209ENST00000487188 IGLC6P0CF74 106 aa4.87□□□□□ -1.63
VPS13D-209ENST00000487188 LGALS3P17931 250 aaKnown RBP4.87□□□□□ -1.63
VPS13D-209ENST00000487188 CCL11P51671 97 aa4.87□□□□□ -1.63
VPS13D-209ENST00000487188 DLX1P56177 255 aa4.87□□□□□ -1.63
VPS13D-209ENST00000487188 DLX6P56179 175 aa4.87□□□□□ -1.63
VPS13D-209ENST00000487188 FHL3Q13643 280 aa4.87□□□□□ -1.63
VPS13D-209ENST00000487188 MEIG1Q5JSS6 88 aa4.87□□□□□ -1.63
VPS13D-209ENST00000487188 TMEM170BQ5T4T1 132 aa4.87□□□□□ -1.63
VPS13D-209ENST00000487188 ZNF491Q8N8L2 437 aa4.87□□□□□ -1.63
VPS13D-209ENST00000487188 NTN5Q8WTR8 489 aaPredicted RBP4.87□□□□□ -1.63
VPS13D-209ENST00000487188 SLC25A15Q9Y619 301 aa4.87□□□□□ -1.63
VPS13D-209ENST00000487188 J3KRW8 73 aa4.87□□□□□ -1.63
VPS13D-209ENST00000487188 IGHV3-23P01764 117 aa4.87□□□□□ -1.63
VPS13D-209ENST00000487188 NBL1P41271 181 aa4.87□□□□□ -1.63
VPS13D-209ENST00000487188 GATA4P43694 442 aa4.87□□□□□ -1.63
VPS13D-209ENST00000487188 ZNF80P51504 273 aaPredicted RBP4.87□□□□□ -1.63
VPS13D-209ENST00000487188 ERCC8Q13216 396 aa4.87□□□□□ -1.63
VPS13D-209ENST00000487188 TMEM95Q3KNT9 176 aa4.87□□□□□ -1.63
VPS13D-209ENST00000487188 FAM159AQ6UWV7 190 aa4.87□□□□□ -1.63
VPS13D-209ENST00000487188 C15orf53Q8NAA6 179 aa4.87□□□□□ -1.63
VPS13D-209ENST00000487188 TIMD4Q96H15 378 aa4.87□□□□□ -1.63
VPS13D-209ENST00000487188 IGHV3-35A0A0C4DH35 117 aa4.87□□□□□ -1.63
VPS13D-209ENST00000487188 LINC01619G3V211 115 aa4.87□□□□□ -1.63
VPS13D-209ENST00000487188 TRGV3P03979 118 aa4.87□□□□□ -1.63
VPS13D-209ENST00000487188 SMIM2Q9BVW6 85 aa4.87□□□□□ -1.63
VPS13D-209ENST00000487188 TRAV2A0A0B4J234 112 aa4.86□□□□□ -1.63
VPS13D-209ENST00000487188 I3L2K1 104 aa4.86□□□□□ -1.63
VPS13D-209ENST00000487188 M0R381 172 aa4.86□□□□□ -1.63
VPS13D-209ENST00000487188 HLA-DMBP28068 263 aa4.86□□□□□ -1.63
VPS13D-209ENST00000487188 PLEKHB2Q96CS7 222 aa4.86□□□□□ -1.63
VPS13D-209ENST00000487188 SPANXA1Q9NS26 97 aa4.86□□□□□ -1.63
VPS13D-209ENST00000487188 PRO1854Q9UHT4 67 aa4.86□□□□□ -1.63
VPS13D-209ENST00000487188 TRAV12-1A0A0B4J245 112 aa4.86□□□□□ -1.63
VPS13D-209ENST00000487188 RHODO00212 210 aa4.86□□□□□ -1.63
VPS13D-209ENST00000487188 C3orf36Q3SXR2 165 aa4.86□□□□□ -1.63
VPS13D-209ENST00000487188 NDUFA11Q86Y39 141 aa4.86□□□□□ -1.63
VPS13D-209ENST00000487188 LINC00574Q9H8X3 128 aa4.86□□□□□ -1.63
VPS13D-209ENST00000487188 TRAV4A0A0B4J268 109 aa4.86□□□□□ -1.63
VPS13D-209ENST00000487188 OVOL3O00110 214 aa4.86□□□□□ -1.63
VPS13D-209ENST00000487188 THBDP07204 575 aa4.86□□□□□ -1.63
VPS13D-209ENST00000487188 RPL13AP40429 203 aaKnown RBP4.86□□□□□ -1.63
VPS13D-209ENST00000487188 C2orf66Q6UXQ4 117 aa4.86□□□□□ -1.63
VPS13D-209ENST00000487188 LINC00311Q8N616 119 aa4.86□□□□□ -1.63
VPS13D-209ENST00000487188 KLHL30-AS1Q8NEE0 82 aa4.86□□□□□ -1.63
VPS13D-209ENST00000487188 OR10J6PQ8NGY7 276 aa4.86□□□□□ -1.63
VPS13D-209ENST00000487188 WDFY3Q8IZQ1 3526 aa4.85□□□□□ -1.63
VPS13D-209ENST00000487188 C10orf126Q8N4M7 172 aa4.85□□□□□ -1.63
VPS13D-209ENST00000487188 C3orf56Q8N813 242 aa4.85□□□□□ -1.63
VPS13D-209ENST00000487188 YAE1D1Q9NRH1 226 aa4.85□□□□□ -1.63
VPS13D-209ENST00000487188 ZNF292O60281 2723 aa4.85□□□□□ -1.63
VPS13D-209ENST00000487188 H3BMM0 161 aa4.85□□□□□ -1.63
VPS13D-209ENST00000487188 IGHV1-8P0DP01 117 aa4.85□□□□□ -1.63
VPS13D-209ENST00000487188 ATXN8Q156A1 80 aa4.85□□□□□ -1.63
VPS13D-209ENST00000487188 PAPPA-AS1Q5QFB9 102 aa4.85□□□□□ -1.63
VPS13D-209ENST00000487188 IL17RELQ6ZVW7 336 aa4.85□□□□□ -1.63
VPS13D-209ENST00000487188 ASCL5Q7RTU5 278 aa4.85□□□□□ -1.63
VPS13D-209ENST00000487188 C1orf210Q8IVY1 113 aa4.85□□□□□ -1.63
VPS13D-209ENST00000487188 UBE2WQ96B02 151 aa4.85□□□□□ -1.63
VPS13D-209ENST00000487188 C21orf62Q9NYP8 219 aa4.85□□□□□ -1.63
VPS13D-209ENST00000487188 IGHV1-3A0A0C4DH29 117 aa4.85□□□□□ -1.63
VPS13D-209ENST00000487188 TEX22C9J3V5 150 aa4.85□□□□□ -1.63
VPS13D-209ENST00000487188 UBE2D3P61077 147 aa4.85□□□□□ -1.63
VPS13D-209ENST00000487188 UBE2D2P62837 147 aa4.85□□□□□ -1.63
VPS13D-209ENST00000487188 GFRALQ6UXV0 394 aa4.85□□□□□ -1.63
VPS13D-209ENST00000487188 CFHR4Q92496 578 aa4.85□□□□□ -1.63
VPS13D-209ENST00000487188 K7EIM0 57 aa4.84□□□□□ -1.63
VPS13D-209ENST00000487188 UBE2D1P51668 147 aa4.84□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms