RNA–Protein interactions for RNA: ENST00000486641.2

CCDC171-208, Transcript of coiled-coil domain containing 171, humanhuman

TSL 1 (best)

Gene CCDC171, Length 2,322 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC171-208ENST00000486641 ERCC8Q13216 396 aa8.24□□□□□ -1.09
CCDC171-208ENST00000486641 CFAP161Q6P656 301 aa8.24□□□□□ -1.09
CCDC171-208ENST00000486641 PLEKHB2Q96CS7 222 aa8.24□□□□□ -1.09
CCDC171-208ENST00000486641 TRAV12-1A0A0B4J245 112 aa8.23□□□□□ -1.09
CCDC171-208ENST00000486641 TCL1BO95988 128 aa8.23□□□□□ -1.09
CCDC171-208ENST00000486641 TMEM155Q4W5P6 130 aa8.23□□□□□ -1.09
CCDC171-208ENST00000486641 GFRALQ6UXV0 394 aa8.23□□□□□ -1.09
CCDC171-208ENST00000486641 TEX29Q8N6K0 151 aa8.23□□□□□ -1.09
CCDC171-208ENST00000486641 CCL17Q92583 94 aa8.23□□□□□ -1.09
CCDC171-208ENST00000486641 RAXQ9Y2V3 346 aa8.23□□□□□ -1.09
CCDC171-208ENST00000486641 SMAD5-AS1Q9Y6J3 95 aa8.23□□□□□ -1.09
CCDC171-208ENST00000486641 TMEM178BH3BS89 294 aa8.23□□□□□ -1.09
CCDC171-208ENST00000486641 ZNF672Q499Z4 452 aaPredicted RBP8.23□□□□□ -1.09
CCDC171-208ENST00000486641 CFHR4Q92496 578 aa8.23□□□□□ -1.09
CCDC171-208ENST00000486641 KLK15Q9H2R5 256 aa8.23□□□□□ -1.09
CCDC171-208ENST00000486641 VCX2Q9H322 139 aa8.23□□□□□ -1.09
CCDC171-208ENST00000486641 A6NJY4 79 aa8.22□□□□□ -1.09
CCDC171-208ENST00000486641 H3BVH4 76 aa8.22□□□□□ -1.09
CCDC171-208ENST00000486641 SRSF9Q13242 221 aaKnown RBP eCLIP8.22□□□□□ -1.09
CCDC171-208ENST00000486641 IGKV3D-20A0A0C4DH25 116 aa8.21□□□□□ -1.09
CCDC171-208ENST00000486641 ZNF815PA8K554 130 aa8.21□□□□□ -1.09
CCDC171-208ENST00000486641 C17orf100A8MU93 164 aa8.21□□□□□ -1.09
CCDC171-208ENST00000486641 CD7P09564 240 aa8.21□□□□□ -1.09
CCDC171-208ENST00000486641 C3orf36Q3SXR2 165 aa8.21□□□□□ -1.09
CCDC171-208ENST00000486641 ANXA2RQ3ZCQ2 193 aa8.21□□□□□ -1.09
CCDC171-208ENST00000486641 SBSPONQ8IVN8 264 aa8.21□□□□□ -1.09
CCDC171-208ENST00000486641 DYNAPQ8N1N2 210 aa8.21□□□□□ -1.09
CCDC171-208ENST00000486641 CITED1Q99966 193 aa8.21□□□□□ -1.09
CCDC171-208ENST00000486641 SRSF8Q9BRL6 282 aaKnown RBP8.21□□□□□ -1.09
CCDC171-208ENST00000486641 PRADC1Q9BSG0 188 aa8.21□□□□□ -1.09
CCDC171-208ENST00000486641 C11orf21Q9P2W6 132 aa8.21□□□□□ -1.09
CCDC171-208ENST00000486641 A8MWV9 139 aa8.21□□□□□ -1.1
CCDC171-208ENST00000486641 PRAC2D3DTV9 90 aa8.21□□□□□ -1.1
CCDC171-208ENST00000486641 BUB1B-PAK6H3BSN5 160 aa8.21□□□□□ -1.1
CCDC171-208ENST00000486641 TGFAP01135 160 aa8.21□□□□□ -1.1
CCDC171-208ENST00000486641 IGLV1-47P01700 117 aa8.21□□□□□ -1.1
CCDC171-208ENST00000486641 RPL7P18124 248 aaKnown RBP8.21□□□□□ -1.1
CCDC171-208ENST00000486641 SCGB1D4Q6XE38 83 aa8.21□□□□□ -1.1
CCDC171-208ENST00000486641 IL17RELQ6ZVW7 336 aa8.21□□□□□ -1.1
CCDC171-208ENST00000486641 ANKRD29Q8N6D5 301 aa8.21□□□□□ -1.1
CCDC171-208ENST00000486641 NEXN-AS1Q8NBZ9 246 aa8.21□□□□□ -1.1
CCDC171-208ENST00000486641 FDCSPQ8NFU4 85 aa8.21□□□□□ -1.1
CCDC171-208ENST00000486641 VKORC1Q9BQB6 163 aa8.21□□□□□ -1.1
CCDC171-208ENST00000486641 CSMD1Q96PZ7 3565 aa8.21□□□□□ -1.1
CCDC171-208ENST00000486641 MBD3L4A6NDZ8 208 aaPredicted RBP8.2□□□□□ -1.1
CCDC171-208ENST00000486641 MBD3L3A6NE82 208 aaPredicted RBP8.2□□□□□ -1.1
CCDC171-208ENST00000486641 MBD3L5A6NJ08 208 aaPredicted RBP8.2□□□□□ -1.1
CCDC171-208ENST00000486641 SLC25A16P16260 332 aa8.2□□□□□ -1.1
CCDC171-208ENST00000486641 NDUFA11Q86Y39 141 aa8.2□□□□□ -1.1
CCDC171-208ENST00000486641 KLHL30-AS1Q8NEE0 82 aa8.2□□□□□ -1.1
CCDC171-208ENST00000486641 MBD3L2Q8NHZ7 208 aaPredicted RBP8.2□□□□□ -1.1
CCDC171-208ENST00000486641 SCGB3A1Q96QR1 104 aa8.2□□□□□ -1.1
CCDC171-208ENST00000486641 F8W735 103 aaPredicted RBP8.2□□□□□ -1.1
CCDC171-208ENST00000486641 FAM27E3Q08E93 113 aa8.2□□□□□ -1.1
CCDC171-208ENST00000486641 SHISA2Q6UWI4 295 aa8.2□□□□□ -1.1
CCDC171-208ENST00000486641 RAB1BQ9H0U4 201 aa8.2□□□□□ -1.1
CCDC171-208ENST00000486641 TMEM262E9PQX1 116 aa8.19□□□□□ -1.1
CCDC171-208ENST00000486641 IGHV3-23P01764 117 aa8.19□□□□□ -1.1
CCDC171-208ENST00000486641 COX6B1P14854 86 aa8.19□□□□□ -1.1
CCDC171-208ENST00000486641 OR11H6Q8NGC7 330 aa8.19□□□□□ -1.1
CCDC171-208ENST00000486641 AJUBAQ96IF1 538 aa8.19□□□□□ -1.1
CCDC171-208ENST00000486641 IGHV7-4-1A0A0J9YVY3 117 aa8.19□□□□□ -1.1
CCDC171-208ENST00000486641 RHODO00212 210 aa8.19□□□□□ -1.1
CCDC171-208ENST00000486641 SRD5A1P18405 259 aa8.19□□□□□ -1.1
CCDC171-208ENST00000486641 MFAP4P55083 255 aa8.19□□□□□ -1.1
CCDC171-208ENST00000486641 TOMM6Q96B49 74 aa8.19□□□□□ -1.1
CCDC171-208ENST00000486641 TRBV20-1A0A075B6N2 111 aa8.18□□□□□ -1.1
CCDC171-208ENST00000486641 IGHV3OR16-8A0A075B7F1 116 aa8.18□□□□□ -1.1
CCDC171-208ENST00000486641 ADIPOQQ15848 244 aa8.18□□□□□ -1.1
CCDC171-208ENST00000486641 LYRM7Q5U5X0 104 aa8.18□□□□□ -1.1
CCDC171-208ENST00000486641 ASCL5Q7RTU5 278 aa8.18□□□□□ -1.1
CCDC171-208ENST00000486641 BAALCQ8WXS3 180 aa8.18□□□□□ -1.1
CCDC171-208ENST00000486641 RASL10AQ92737 203 aa8.18□□□□□ -1.1
CCDC171-208ENST00000486641 FANCD2OSQ96PS1 177 aa8.18□□□□□ -1.1
CCDC171-208ENST00000486641 SMIM2Q9BVW6 85 aa8.18□□□□□ -1.1
CCDC171-208ENST00000486641 TRBV7-9A0A0J9YWB2 115 aa8.18□□□□□ -1.1
CCDC171-208ENST00000486641 CCDC179H3BU77 68 aa8.18□□□□□ -1.1
CCDC171-208ENST00000486641 CFC1BP0CG36 223 aa8.18□□□□□ -1.1
CCDC171-208ENST00000486641 CFC1P0CG37 223 aa8.18□□□□□ -1.1
CCDC171-208ENST00000486641 PRTN3P24158 256 aa8.18□□□□□ -1.1
CCDC171-208ENST00000486641 COX7A1P24310 79 aa8.18□□□□□ -1.1
CCDC171-208ENST00000486641 Q6ZQT7 251 aa8.18□□□□□ -1.1
CCDC171-208ENST00000486641 RNF182Q8N6D2 247 aa8.18□□□□□ -1.1
CCDC171-208ENST00000486641 NUP37Q8NFH4 326 aa8.18□□□□□ -1.1
CCDC171-208ENST00000486641 NDUFV3P56181 108 aaKnown RBP8.17□□□□□ -1.1
CCDC171-208ENST00000486641 MUC3AQ02505 3323 aa8.17□□□□□ -1.1
CCDC171-208ENST00000486641 TRAV4A0A0B4J268 109 aa8.17□□□□□ -1.1
CCDC171-208ENST00000486641 CRLF1O75462 422 aa8.17□□□□□ -1.1
CCDC171-208ENST00000486641 SCGB1C2P0DMR2 95 aa8.17□□□□□ -1.1
CCDC171-208ENST00000486641 HERV-K104P63124 156 aa8.17□□□□□ -1.1
CCDC171-208ENST00000486641 GAGE2BQ13066 116 aa8.17□□□□□ -1.1
CCDC171-208ENST00000486641 GAGE2EQ4V326 116 aa8.17□□□□□ -1.1
CCDC171-208ENST00000486641 SPANXN1Q5VSR9 72 aa8.17□□□□□ -1.1
CCDC171-208ENST00000486641 IGFBPL1Q8WX77 278 aa8.17□□□□□ -1.1
CCDC171-208ENST00000486641 GAGE2DQ9UEU5 116 aa8.17□□□□□ -1.1
CCDC171-208ENST00000486641 TACC2O95359 2948 aa8.16□□□□□ -1.1
CCDC171-208ENST00000486641 IGLV11-55A0A075B6I3 123 aa8.16□□□□□ -1.1
CCDC171-208ENST00000486641 TRAV17A0A0B4J275 112 aa8.16□□□□□ -1.1
CCDC171-208ENST00000486641 A0A0J9YY99 117 aa8.16□□□□□ -1.1
CCDC171-208ENST00000486641 CRIP2P52943 208 aaPredicted RBP8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms