RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 ERCC8Q13216 396 aa8.72□□□□□ -1.01
HDAC6-228ENST00000486227 LINC01619G3V211 115 aa8.72□□□□□ -1.01
HDAC6-228ENST00000486227 PDE6HQ13956 83 aa8.72□□□□□ -1.01
HDAC6-228ENST00000486227 FBXL19-AS1Q494R0 122 aa8.72□□□□□ -1.01
HDAC6-228ENST00000486227 SFTA2Q6UW10 78 aa8.72□□□□□ -1.01
HDAC6-228ENST00000486227 CHD8Q9HCK8 2581 aa8.72□□□□□ -1.01
HDAC6-228ENST00000486227 TRBV19A0A075B6N1 114 aa8.72□□□□□ -1.01
HDAC6-228ENST00000486227 ORMDL2Q53FV1 153 aa8.72□□□□□ -1.01
HDAC6-228ENST00000486227 DTX2Q86UW9 622 aa8.72□□□□□ -1.01
HDAC6-228ENST00000486227 RITA1Q96K30 269 aa8.72□□□□□ -1.01
HDAC6-228ENST00000486227 FXYD7P58549 80 aa8.72□□□□□ -1.01
HDAC6-228ENST00000486227 AMN1Q8IY45 258 aa8.72□□□□□ -1.01
HDAC6-228ENST00000486227 NRGNQ92686 78 aa8.72□□□□□ -1.01
HDAC6-228ENST00000486227 DLX4Q92988 240 aaPredicted RBP8.72□□□□□ -1.01
HDAC6-228ENST00000486227 TSSC4Q9Y5U2 329 aaPredicted RBP8.72□□□□□ -1.01
HDAC6-228ENST00000486227 UBE2DNLQ8IWF7 75 aa8.71□□□□□ -1.01
HDAC6-228ENST00000486227 RNF182Q8N6D2 247 aa8.71□□□□□ -1.01
HDAC6-228ENST00000486227 ZNF815PA8K554 130 aa8.71□□□□□ -1.02
HDAC6-228ENST00000486227 DEFB112Q30KQ8 113 aa8.71□□□□□ -1.02
HDAC6-228ENST00000486227 ZFAND6Q6FIF0 208 aa8.71□□□□□ -1.02
HDAC6-228ENST00000486227 SIVA1O15304 175 aa8.71□□□□□ -1.02
HDAC6-228ENST00000486227 CIRBPQ14011 172 aaKnown RBP8.71□□□□□ -1.02
HDAC6-228ENST00000486227 OR11H6Q8NGC7 330 aa8.71□□□□□ -1.02
HDAC6-228ENST00000486227 C10orf105Q8TEF2 133 aa8.71□□□□□ -1.02
HDAC6-228ENST00000486227 CHTOPQ9Y3Y2 248 aaKnown RBP8.71□□□□□ -1.02
HDAC6-228ENST00000486227 LRP4O75096 1905 aa8.71□□□□□ -1.02
HDAC6-228ENST00000486227 HOXB4P17483 251 aaPredicted RBP8.71□□□□□ -1.02
HDAC6-228ENST00000486227 PLNP26678 52 aa8.71□□□□□ -1.02
HDAC6-228ENST00000486227 THAP8Q8NA92 274 aa8.71□□□□□ -1.02
HDAC6-228ENST00000486227 F8W1H4 67 aa8.7□□□□□ -1.02
HDAC6-228ENST00000486227 LAGE3Q14657 143 aa8.7□□□□□ -1.02
HDAC6-228ENST00000486227 VPREB3Q9UKI3 123 aa8.7□□□□□ -1.02
HDAC6-228ENST00000486227 CD300EQ496F6 205 aaPredicted RBP8.7□□□□□ -1.02
HDAC6-228ENST00000486227 MEIG1Q5JSS6 88 aa8.7□□□□□ -1.02
HDAC6-228ENST00000486227 LINC00477Q96M19 166 aa8.7□□□□□ -1.02
HDAC6-228ENST00000486227 TRAV12-3A0A0B4J271 114 aa8.7□□□□□ -1.02
HDAC6-228ENST00000486227 TAX1BP3O14907 124 aa8.7□□□□□ -1.02
HDAC6-228ENST00000486227 ELANEP08246 267 aa8.7□□□□□ -1.02
HDAC6-228ENST00000486227 SPINK8P0C7L1 97 aa8.7□□□□□ -1.02
HDAC6-228ENST00000486227 NUP210LQ5VU65 1888 aa8.7□□□□□ -1.02
HDAC6-228ENST00000486227 ATP6V0BQ99437 205 aa8.69□□□□□ -1.02
HDAC6-228ENST00000486227 DEFB131AP59861 70 aa8.69□□□□□ -1.02
HDAC6-228ENST00000486227 GAGE2BQ13066 116 aa8.69□□□□□ -1.02
HDAC6-228ENST00000486227 GAGE2EQ4V326 116 aa8.69□□□□□ -1.02
HDAC6-228ENST00000486227 FXYD5Q96DB9 178 aa8.69□□□□□ -1.02
HDAC6-228ENST00000486227 GAGE2DQ9UEU5 116 aa8.69□□□□□ -1.02
HDAC6-228ENST00000486227 DYSFO75923 2080 aa8.69□□□□□ -1.02
HDAC6-228ENST00000486227 HIVEP3Q5T1R4 2406 aa8.69□□□□□ -1.02
HDAC6-228ENST00000486227 ASPHD1Q5U4P2 390 aa8.69□□□□□ -1.02
HDAC6-228ENST00000486227 FAM104BQ5XKR9 115 aa8.69□□□□□ -1.02
HDAC6-228ENST00000486227 WNK1Q9H4A3 2382 aa8.69□□□□□ -1.02
HDAC6-228ENST00000486227 GAGE12HA6NDE8 117 aa8.69□□□□□ -1.02
HDAC6-228ENST00000486227 PROP1O75360 226 aa8.69□□□□□ -1.02
HDAC6-228ENST00000486227 ETDBQ3ZM63 59 aa8.69□□□□□ -1.02
HDAC6-228ENST00000486227 ZNF491Q8N8L2 437 aa8.69□□□□□ -1.02
HDAC6-228ENST00000486227 UBE2E2Q96LR5 201 aa8.69□□□□□ -1.02
HDAC6-228ENST00000486227 ZNF747Q9BV97 191 aa8.69□□□□□ -1.02
HDAC6-228ENST00000486227 MYO9AB2RTY4 2548 aa8.68□□□□□ -1.02
HDAC6-228ENST00000486227 INSP01308 110 aa8.68□□□□□ -1.02
HDAC6-228ENST00000486227 IGHV4-59P01825 116 aa8.68□□□□□ -1.02
HDAC6-228ENST00000486227 AZU1P20160 251 aa8.68□□□□□ -1.02
HDAC6-228ENST00000486227 TMEM158Q8WZ71 300 aa8.68□□□□□ -1.02
HDAC6-228ENST00000486227 H3BRN7 92 aa8.68□□□□□ -1.02
HDAC6-228ENST00000486227 SCGB1A1P11684 91 aa8.68□□□□□ -1.02
HDAC6-228ENST00000486227 UTF1Q5T230 341 aa8.68□□□□□ -1.02
HDAC6-228ENST00000486227 ARHGAP21Q5T5U3 1957 aa8.68□□□□□ -1.02
HDAC6-228ENST00000486227 ABCA2Q9BZC7 2435 aa8.68□□□□□ -1.02
HDAC6-228ENST00000486227 ZNF295-AS1Q8N0V1 137 aa8.68□□□□□ -1.02
HDAC6-228ENST00000486227 MRAP2Q96G30 205 aa8.68□□□□□ -1.02
HDAC6-228ENST00000486227 C8orf49Q96NF6 230 aa8.68□□□□□ -1.02
HDAC6-228ENST00000486227 PRADC1Q9BSG0 188 aa8.68□□□□□ -1.02
HDAC6-228ENST00000486227 IGLV1-47P01700 117 aa8.67□□□□□ -1.02
HDAC6-228ENST00000486227 TMEM75Q8N9X5 138 aa8.67□□□□□ -1.02
HDAC6-228ENST00000486227 DEFB104AQ8WTQ1 72 aa8.67□□□□□ -1.02
HDAC6-228ENST00000486227 PGPEP1Q9NXJ5 209 aa8.67□□□□□ -1.02
HDAC6-228ENST00000486227 TRGV1A0A0A0MS02 117 aa8.67□□□□□ -1.02
HDAC6-228ENST00000486227 SMKR1H3BMG3 65 aa8.67□□□□□ -1.02
HDAC6-228ENST00000486227 NCKAP5O14513 1909 aa8.67□□□□□ -1.02
HDAC6-228ENST00000486227 ZNF415Q09FC8 603 aa8.67□□□□□ -1.02
HDAC6-228ENST00000486227 SCRT2Q9NQ03 307 aa8.67□□□□□ -1.02
HDAC6-228ENST00000486227 LINC01549A6NIU2 74 aa8.67□□□□□ -1.02
HDAC6-228ENST00000486227 C10orf126Q8N4M7 172 aa8.67□□□□□ -1.02
HDAC6-228ENST00000486227 COPS9Q8WXC6 57 aa8.67□□□□□ -1.02
HDAC6-228ENST00000486227 TSPAN13O95857 204 aa8.66□□□□□ -1.02
HDAC6-228ENST00000486227 CRPP02741 224 aa8.66□□□□□ -1.02
HDAC6-228ENST00000486227 FRMD6-AS1P0C7T7 363 aa8.66□□□□□ -1.02
HDAC6-228ENST00000486227 RBX1P62877 108 aa8.66□□□□□ -1.02
HDAC6-228ENST00000486227 C17orf77Q96MU5 243 aa8.66□□□□□ -1.02
HDAC6-228ENST00000486227 VGLL1Q99990 258 aa8.66□□□□□ -1.02
HDAC6-228ENST00000486227 CHCHD5Q9BSY4 110 aa8.66□□□□□ -1.02
HDAC6-228ENST00000486227 TMEM14CQ9P0S9 112 aa8.66□□□□□ -1.02
HDAC6-228ENST00000486227 PLXNB1O43157 2135 aa8.66□□□□□ -1.02
HDAC6-228ENST00000486227 A0A087WX48 190 aa8.66□□□□□ -1.02
HDAC6-228ENST00000486227 CENPVL3A0A0U1RRI6 287 aa8.66□□□□□ -1.02
HDAC6-228ENST00000486227 PRSS46E5RG02 174 aa8.66□□□□□ -1.02
HDAC6-228ENST00000486227 CGB3P0DN86 165 aa8.66□□□□□ -1.02
HDAC6-228ENST00000486227 CGB7P0DN87 165 aa8.66□□□□□ -1.02
HDAC6-228ENST00000486227 E7EUB6 86 aa8.66□□□□□ -1.02
HDAC6-228ENST00000486227 ZFP36P26651 326 aaKnown RBP8.66□□□□□ -1.02
HDAC6-228ENST00000486227 TCTEX1D4Q5JR98 221 aa8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 122 ms