RNA–Protein interactions for RNA: ENST00000482217.1

VPS41-212, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 951 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-212ENST00000482217 TAS2R4Q9NYW5 299 aa2.71□□□□□ -1.98
VPS41-212ENST00000482217 ZNF222Q9UK12 451 aa2.71□□□□□ -1.98
VPS41-212ENST00000482217 MALRD1Q5VYJ5 2156 aa2.71□□□□□ -1.98
VPS41-212ENST00000482217 NESP48681 1621 aa2.71□□□□□ -1.98
VPS41-212ENST00000482217 TRPM3Q9HCF6 1732 aaPredicted RBP2.71□□□□□ -1.98
VPS41-212ENST00000482217 DIDO1Q9BTC0 2240 aaKnown RBP2.7□□□□□ -1.98
VPS41-212ENST00000482217 KIF1AQ12756 1690 aa2.7□□□□□ -1.98
VPS41-212ENST00000482217 USP54Q70EL1 1684 aa2.7□□□□□ -1.98
VPS41-212ENST00000482217 SLIT3O75094 1523 aa2.7□□□□□ -1.98
VPS41-212ENST00000482217 IGKV1D-37A0A075B6S9 117 aa2.7□□□□□ -1.98
VPS41-212ENST00000482217 IGKV2D-26A0A0A0MRZ7 120 aa2.7□□□□□ -1.98
VPS41-212ENST00000482217 IGHV1-3A0A0C4DH29 117 aa2.7□□□□□ -1.98
VPS41-212ENST00000482217 C17orf51A8MQB3 221 aa2.7□□□□□ -1.98
VPS41-212ENST00000482217 IGHV1-46P01743 117 aa2.7□□□□□ -1.98
VPS41-212ENST00000482217 IL5P05113 134 aa2.7□□□□□ -1.98
VPS41-212ENST00000482217 IGLC2P0DOY2 106 aa2.7□□□□□ -1.98
VPS41-212ENST00000482217 IGLC3P0DOY3 106 aa2.7□□□□□ -1.98
VPS41-212ENST00000482217 COL8A2P25067 703 aa2.7□□□□□ -1.98
VPS41-212ENST00000482217 CKS2P33552 79 aa2.7□□□□□ -1.98
VPS41-212ENST00000482217 ASIPP42127 132 aa2.7□□□□□ -1.98
VPS41-212ENST00000482217 SSR2P43308 183 aa2.7□□□□□ -1.98
VPS41-212ENST00000482217 KRTAP10-12P60413 245 aa2.7□□□□□ -1.98
VPS41-212ENST00000482217 MRPS36P82909 103 aaKnown RBP2.7□□□□□ -1.98
VPS41-212ENST00000482217 MIAQ16674 131 aa2.7□□□□□ -1.98
VPS41-212ENST00000482217 DPPA3Q6W0C5 159 aa2.7□□□□□ -1.98
VPS41-212ENST00000482217 ATP11AUNQ6ZP68 121 aa2.7□□□□□ -1.98
VPS41-212ENST00000482217 ARPINQ7Z6K5 226 aa2.7□□□□□ -1.98
VPS41-212ENST00000482217 VSTM2AQ8TAG5 236 aa2.7□□□□□ -1.98
VPS41-212ENST00000482217 FAM213BQ8TBF2 198 aa2.7□□□□□ -1.98
VPS41-212ENST00000482217 POP5Q969H6 163 aaKnown RBP2.7□□□□□ -1.98
VPS41-212ENST00000482217 SLC50A1Q9BRV3 221 aa2.7□□□□□ -1.98
VPS41-212ENST00000482217 TMEM242Q9NWH2 141 aa2.7□□□□□ -1.98
VPS41-212ENST00000482217 ICOSQ9Y6W8 199 aa2.7□□□□□ -1.98
VPS41-212ENST00000482217 ATRXP46100 2492 aa2.7□□□□□ -1.98
VPS41-212ENST00000482217 COL1A2P08123 1366 aa2.7□□□□□ -1.98
VPS41-212ENST00000482217 NWD2Q9ULI1 1742 aa2.7□□□□□ -1.98
VPS41-212ENST00000482217 MUC4Q99102 2169 aa2.7□□□□□ -1.98
VPS41-212ENST00000482217 SCN11AQ9UI33 1791 aa2.69□□□□□ -1.98
VPS41-212ENST00000482217 CASP8AP2Q9UKL3 1982 aa2.69□□□□□ -1.98
VPS41-212ENST00000482217 AHDC1Q5TGY3 1603 aaPredicted RBP2.69□□□□□ -1.98
VPS41-212ENST00000482217 LTBP1Q14766 1721 aa2.69□□□□□ -1.98
VPS41-212ENST00000482217 TRBV24-1A0A075B6N3 115 aa2.69□□□□□ -1.98
VPS41-212ENST00000482217 TRAV3A0A0B4J244 114 aa2.69□□□□□ -1.98
VPS41-212ENST00000482217 A0A0B4J2C4 111 aa2.69□□□□□ -1.98
VPS41-212ENST00000482217 A0A1W2PQD3 144 aa2.69□□□□□ -1.98
VPS41-212ENST00000482217 ZNF705FA8MVS1 300 aaPredicted RBP2.69□□□□□ -1.98
VPS41-212ENST00000482217 E7EQL1 145 aa2.69□□□□□ -1.98
VPS41-212ENST00000482217 K7EM74 188 aa2.69□□□□□ -1.98
VPS41-212ENST00000482217 SDCBPO00560 298 aaPredicted RBP2.69□□□□□ -1.98
VPS41-212ENST00000482217 NPYP01303 97 aa2.69□□□□□ -1.98
VPS41-212ENST00000482217 IGKCP01834 107 aa2.69□□□□□ -1.98
VPS41-212ENST00000482217 GYPAP02724 150 aa2.69□□□□□ -1.98
VPS41-212ENST00000482217 IGHV4-34P06331 123 aa2.69□□□□□ -1.98
VPS41-212ENST00000482217 ZNF705BP0CI00 300 aaPredicted RBP2.69□□□□□ -1.98
VPS41-212ENST00000482217 ZNF22P17026 224 aaPredicted RBP2.69□□□□□ -1.98
VPS41-212ENST00000482217 FAUP35544 74 aaKnown RBP2.69□□□□□ -1.98
VPS41-212ENST00000482217 POLR2JP52435 117 aaKnown RBP2.69□□□□□ -1.98
VPS41-212ENST00000482217 RBM3P98179 157 aaKnown RBP2.69□□□□□ -1.98
VPS41-212ENST00000482217 Q1RN00 199 aa2.69□□□□□ -1.98
VPS41-212ENST00000482217 S100A7L2Q5SY68 101 aa2.69□□□□□ -1.98
VPS41-212ENST00000482217 CHCHD2P9Q5T1J5 151 aaPredicted RBP2.69□□□□□ -1.98
VPS41-212ENST00000482217 LYZL1Q6UWQ5 148 aa2.69□□□□□ -1.98
VPS41-212ENST00000482217 Q6ZQT7 251 aa2.69□□□□□ -1.98
VPS41-212ENST00000482217 LYZL2Q7Z4W2 148 aa2.69□□□□□ -1.98
VPS41-212ENST00000482217 C5orf38Q86SI9 138 aa2.69□□□□□ -1.98
VPS41-212ENST00000482217 FAM19A2Q8N3H0 131 aa2.69□□□□□ -1.98
VPS41-212ENST00000482217 MIR7-3HGQ8N6C7 128 aa2.69□□□□□ -1.98
VPS41-212ENST00000482217 Q8N814 137 aa2.69□□□□□ -1.98
VPS41-212ENST00000482217 LINC01560Q8TB33 94 aa2.69□□□□□ -1.98
VPS41-212ENST00000482217 ZNF431Q8TF32 576 aaPredicted RBP2.69□□□□□ -1.98
VPS41-212ENST00000482217 CYSTM1Q9H1C7 97 aa2.69□□□□□ -1.98
VPS41-212ENST00000482217 LINC00474Q9P2X8 69 aa2.69□□□□□ -1.98
VPS41-212ENST00000482217 SPCS1Q9Y6A9 102 aa2.69□□□□□ -1.98
VPS41-212ENST00000482217 FANCD2Q9BXW9 1451 aa2.69□□□□□ -1.98
VPS41-212ENST00000482217 NOTCH3Q9UM47 2321 aa2.69□□□□□ -1.98
VPS41-212ENST00000482217 SHANK3Q9BYB0 1731 aa2.68□□□□□ -1.98
VPS41-212ENST00000482217 SIPA1L2Q9P2F8 1722 aaPredicted RBP2.68□□□□□ -1.98
VPS41-212ENST00000482217 PCNX2A6NKB5 2137 aa2.68□□□□□ -1.98
VPS41-212ENST00000482217 IGHV3-64DA0A0J9YX35 117 aa2.68□□□□□ -1.98
VPS41-212ENST00000482217 TRBV7-7A0A0K0K1E9 115 aa2.68□□□□□ -1.98
VPS41-212ENST00000482217 A0A1W2PP18 115 aa2.68□□□□□ -1.98
VPS41-212ENST00000482217 C17orf98A8MV24 154 aa2.68□□□□□ -1.98
VPS41-212ENST00000482217 H3BRM9 83 aa2.68□□□□□ -1.98
VPS41-212ENST00000482217 GNRH2O43555 120 aa2.68□□□□□ -1.98
VPS41-212ENST00000482217 SSSCA1O60232 199 aa2.68□□□□□ -1.98
VPS41-212ENST00000482217 CREBL2O60519 120 aaPredicted RBP2.68□□□□□ -1.98
VPS41-212ENST00000482217 YPEL1O60688 119 aa2.68□□□□□ -1.98
VPS41-212ENST00000482217 CLPSP04118 112 aa2.68□□□□□ -1.98
VPS41-212ENST00000482217 SAA1P0DJI8 122 aaPredicted RBP2.68□□□□□ -1.98
VPS41-212ENST00000482217 ADCYAP1P18509 176 aa2.68□□□□□ -1.98
VPS41-212ENST00000482217 KRTAP5-9P26371 169 aa2.68□□□□□ -1.98
VPS41-212ENST00000482217 LSM3P62310 102 aaKnown RBP2.68□□□□□ -1.98
VPS41-212ENST00000482217 C9orf129Q5T035 196 aaKnown RBP2.68□□□□□ -1.98
VPS41-212ENST00000482217 BVES-AS1Q5T3Y7 98 aa2.68□□□□□ -1.98
VPS41-212ENST00000482217 SPINK14Q6IE38 97 aa2.68□□□□□ -1.98
VPS41-212ENST00000482217 HEPN1Q6WQI6 88 aa2.68□□□□□ -1.98
VPS41-212ENST00000482217 C14orf178Q8N769 122 aaPredicted RBP2.68□□□□□ -1.98
VPS41-212ENST00000482217 SPTSSAQ969W0 71 aa2.68□□□□□ -1.98
VPS41-212ENST00000482217 ST20Q9HBF5 79 aa2.68□□□□□ -1.98
VPS41-212ENST00000482217 LY96Q9Y6Y9 160 aa2.68□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms