RNA–Protein interactions for RNA: ENST00000474655.6

SYNE1-222, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,798 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-222ENST00000474655 FAM19A4Q96LR4 140 aa9.24□□□□□ -0.93
SYNE1-222ENST00000474655 MYO9AB2RTY4 2548 aa9.23□□□□□ -0.93
SYNE1-222ENST00000474655 TMSB15BA0A087X1C1 80 aa9.23□□□□□ -0.93
SYNE1-222ENST00000474655 IGKV3D-20A0A0C4DH25 116 aa9.23□□□□□ -0.93
SYNE1-222ENST00000474655 ORM1P02763 201 aa9.23□□□□□ -0.93
SYNE1-222ENST00000474655 EDN2P20800 178 aa9.23□□□□□ -0.93
SYNE1-222ENST00000474655 APRG1Q8IVJ8 170 aa9.23□□□□□ -0.93
SYNE1-222ENST00000474655 OR10J6PQ8NGY7 276 aa9.23□□□□□ -0.93
SYNE1-222ENST00000474655 SAMD10Q9BYL1 202 aa9.23□□□□□ -0.93
SYNE1-222ENST00000474655 C11orf21Q9P2W6 132 aa9.23□□□□□ -0.93
SYNE1-222ENST00000474655 IGHV4OR15-8A0A075B7B6 117 aa9.22□□□□□ -0.93
SYNE1-222ENST00000474655 A0A087WW49 117 aa9.22□□□□□ -0.93
SYNE1-222ENST00000474655 RPL11P62913 178 aaKnown RBP9.22□□□□□ -0.93
SYNE1-222ENST00000474655 ZFAND2AQ8N6M9 145 aa9.22□□□□□ -0.93
SYNE1-222ENST00000474655 KLHDC1Q8N7A1 406 aa9.22□□□□□ -0.93
SYNE1-222ENST00000474655 OR8A1Q8NGG7 326 aa9.22□□□□□ -0.93
SYNE1-222ENST00000474655 URB1-AS1Q96HZ7 61 aa9.22□□□□□ -0.93
SYNE1-222ENST00000474655 DUX5Q96PT3 197 aa9.22□□□□□ -0.93
SYNE1-222ENST00000474655 FAM181BA6NEQ2 426 aa9.22□□□□□ -0.93
SYNE1-222ENST00000474655 HOXD3P31249 432 aaPredicted RBP9.22□□□□□ -0.93
SYNE1-222ENST00000474655 AMTP48728 403 aa9.22□□□□□ -0.93
SYNE1-222ENST00000474655 FAM104BQ5XKR9 115 aa9.22□□□□□ -0.93
SYNE1-222ENST00000474655 TPPP3Q9BW30 176 aa9.22□□□□□ -0.93
SYNE1-222ENST00000474655 SONP18583 2426 aaKnown RBP9.21□□□□□ -0.93
SYNE1-222ENST00000474655 DNAJC9-AS1A6NH13 148 aa9.21□□□□□ -0.94
SYNE1-222ENST00000474655 ZNF705DP0CH99 300 aaPredicted RBP9.21□□□□□ -0.94
SYNE1-222ENST00000474655 ZNF705BP0CI00 300 aaPredicted RBP9.21□□□□□ -0.94
SYNE1-222ENST00000474655 ID1P41134 155 aa9.21□□□□□ -0.94
SYNE1-222ENST00000474655 NIT1Q86X76 327 aa9.21□□□□□ -0.94
SYNE1-222ENST00000474655 WFDC12Q8WWY7 111 aa9.21□□□□□ -0.94
SYNE1-222ENST00000474655 CHCHD1Q96BP2 118 aaKnown RBP9.21□□□□□ -0.94
SYNE1-222ENST00000474655 U3KQK5 164 aa9.21□□□□□ -0.94
SYNE1-222ENST00000474655 GCN1Q92616 2671 aaKnown RBP9.21□□□□□ -0.94
SYNE1-222ENST00000474655 NTF3P20783 257 aa9.2□□□□□ -0.94
SYNE1-222ENST00000474655 SYNJ2BPP57105 145 aa9.2□□□□□ -0.94
SYNE1-222ENST00000474655 TCTEX1D4Q5JR98 221 aa9.2□□□□□ -0.94
SYNE1-222ENST00000474655 PRR31Q5SQ13 230 aa9.2□□□□□ -0.94
SYNE1-222ENST00000474655 PRR9Q5T870 116 aa9.2□□□□□ -0.94
SYNE1-222ENST00000474655 Q6ZSV7 163 aa9.2□□□□□ -0.94
SYNE1-222ENST00000474655 TMEM191AQ9H0A3 160 aa9.2□□□□□ -0.94
SYNE1-222ENST00000474655 NAGKQ9UJ70 344 aa9.2□□□□□ -0.94
SYNE1-222ENST00000474655 HSBP1O75506 76 aa9.19□□□□□ -0.94
SYNE1-222ENST00000474655 C4orf3Q8WVX3 66 aa9.19□□□□□ -0.94
SYNE1-222ENST00000474655 MS4A6AQ9H2W1 248 aa9.19□□□□□ -0.94
SYNE1-222ENST00000474655 IGHV4-4A0A075B6R2 117 aa9.19□□□□□ -0.94
SYNE1-222ENST00000474655 C2orf70A6NJV1 201 aa9.19□□□□□ -0.94
SYNE1-222ENST00000474655 K7EQG2 157 aa9.19□□□□□ -0.94
SYNE1-222ENST00000474655 SNAI2O43623 268 aa9.19□□□□□ -0.94
SYNE1-222ENST00000474655 OR5AL1P0C617 328 aa9.19□□□□□ -0.94
SYNE1-222ENST00000474655 PMCHP20382 165 aa9.19□□□□□ -0.94
SYNE1-222ENST00000474655 PKIAP61925 76 aa9.19□□□□□ -0.94
SYNE1-222ENST00000474655 FAM19A2Q8N3H0 131 aa9.19□□□□□ -0.94
SYNE1-222ENST00000474655 ESM1Q9NQ30 184 aa9.19□□□□□ -0.94
SYNE1-222ENST00000474655 RNF114Q9Y508 228 aa9.19□□□□□ -0.94
SYNE1-222ENST00000474655 IGKV3-7A0A075B6H7 116 aa9.18□□□□□ -0.94
SYNE1-222ENST00000474655 TRAV21A0A0B4J279 112 aa9.18□□□□□ -0.94
SYNE1-222ENST00000474655 LINC00587B1AMM8 73 aa9.18□□□□□ -0.94
SYNE1-222ENST00000474655 F6UB75 175 aa9.18□□□□□ -0.94
SYNE1-222ENST00000474655 SCGB1D1O95968 90 aa9.18□□□□□ -0.94
SYNE1-222ENST00000474655 LINC00614P0C842 121 aa9.18□□□□□ -0.94
SYNE1-222ENST00000474655 SRD5A1P18405 259 aa9.18□□□□□ -0.94
SYNE1-222ENST00000474655 CD33P20138 364 aa9.18□□□□□ -0.94
SYNE1-222ENST00000474655 DEFB1P60022 68 aa9.18□□□□□ -0.94
SYNE1-222ENST00000474655 TWIST1Q15672 202 aa9.18□□□□□ -0.94
SYNE1-222ENST00000474655 ZNF664Q8N3J9 261 aa9.18□□□□□ -0.94
SYNE1-222ENST00000474655 TMEM160Q9NX00 188 aa9.18□□□□□ -0.94
SYNE1-222ENST00000474655 ACANP16112 2415 aa9.17□□□□□ -0.94
SYNE1-222ENST00000474655 KLLNB2CW77 178 aa9.17□□□□□ -0.94
SYNE1-222ENST00000474655 MRPL51Q4U2R6 128 aaKnown RBP9.17□□□□□ -0.94
SYNE1-222ENST00000474655 RNASEKQ6P5S7 137 aaKnown RBP9.17□□□□□ -0.94
SYNE1-222ENST00000474655 ADAMTSL5Q6ZMM2 481 aa9.17□□□□□ -0.94
SYNE1-222ENST00000474655 TEX43Q6ZNM6 134 aa9.17□□□□□ -0.94
SYNE1-222ENST00000474655 Q6ZQT7 251 aa9.17□□□□□ -0.94
SYNE1-222ENST00000474655 C18orf65Q6ZTR6 163 aa9.17□□□□□ -0.94
SYNE1-222ENST00000474655 AMN1Q8IY45 258 aa9.17□□□□□ -0.94
SYNE1-222ENST00000474655 Q8N976 141 aa9.17□□□□□ -0.94
SYNE1-222ENST00000474655 ODF3Q96PU9 254 aa9.17□□□□□ -0.94
SYNE1-222ENST00000474655 AKAP9Q99996 3911 aa9.17□□□□□ -0.94
SYNE1-222ENST00000474655 LINC01619G3V211 115 aa9.17□□□□□ -0.94
SYNE1-222ENST00000474655 ORMDL3Q8N138 153 aa9.17□□□□□ -0.94
SYNE1-222ENST00000474655 YAE1D1Q9NRH1 226 aa9.17□□□□□ -0.94
SYNE1-222ENST00000474655 MSRB1Q9NZV6 116 aa9.17□□□□□ -0.94
SYNE1-222ENST00000474655 MUC21A0A0G2JKD1 596 aa9.16□□□□□ -0.94
SYNE1-222ENST00000474655 MUC21A0A140T8X8 626 aa9.16□□□□□ -0.94
SYNE1-222ENST00000474655 TSTD3H0UI37 97 aa9.16□□□□□ -0.94
SYNE1-222ENST00000474655 M0R2Z0 102 aa9.16□□□□□ -0.94
SYNE1-222ENST00000474655 C3orf79P0CE67 100 aa9.16□□□□□ -0.94
SYNE1-222ENST00000474655 RAB4AP20338 218 aa9.16□□□□□ -0.94
SYNE1-222ENST00000474655 SNRPD3P62318 126 aaKnown RBP9.16□□□□□ -0.94
SYNE1-222ENST00000474655 SCGB2A2Q13296 93 aa9.16□□□□□ -0.94
SYNE1-222ENST00000474655 MUC21Q5SSG8 566 aa9.16□□□□□ -0.94
SYNE1-222ENST00000474655 RNF185Q96GF1 192 aa9.16□□□□□ -0.94
SYNE1-222ENST00000474655 D6R8Y8 96 aa9.15□□□□□ -0.94
SYNE1-222ENST00000474655 M0QZ24 198 aa9.15□□□□□ -0.94
SYNE1-222ENST00000474655 PPBPP02775 128 aa9.15□□□□□ -0.94
SYNE1-222ENST00000474655 RNASE1P07998 156 aaKnown RBP9.15□□□□□ -0.94
SYNE1-222ENST00000474655 MED14OSP0DP75 135 aa9.15□□□□□ -0.94
SYNE1-222ENST00000474655 SLURP1P55000 103 aa9.15□□□□□ -0.94
SYNE1-222ENST00000474655 OR11H1Q8NG94 326 aa9.15□□□□□ -0.94
SYNE1-222ENST00000474655 PRELID3AQ96N28 172 aa9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms