RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 CCL3L1P16619 93 aa7.11□□□□□ -1.27
COL6A3-210ENST00000473258 NACAE9PAV3 2078 aa7.11□□□□□ -1.27
COL6A3-210ENST00000473258 TGFBR3LH3BV60 316 aa7.11□□□□□ -1.27
COL6A3-210ENST00000473258 CASC2Q6XLA1 102 aa7.11□□□□□ -1.27
COL6A3-210ENST00000473258 DENND4AQ7Z401 1863 aa7.11□□□□□ -1.27
COL6A3-210ENST00000473258 GNLYP22749 145 aa7.11□□□□□ -1.27
COL6A3-210ENST00000473258 TRIP12Q14669 1992 aaPredicted RBP7.11□□□□□ -1.27
COL6A3-210ENST00000473258 PLA2G5P39877 138 aa7.11□□□□□ -1.27
COL6A3-210ENST00000473258 IGLV3-21P80748 117 aaPredicted RBP7.11□□□□□ -1.27
COL6A3-210ENST00000473258 TMEM14CQ9P0S9 112 aa7.11□□□□□ -1.27
COL6A3-210ENST00000473258 FREM3P0C091 2139 aa7.11□□□□□ -1.27
COL6A3-210ENST00000473258 NRXN3Q9Y4C0 1643 aa7.11□□□□□ -1.27
COL6A3-210ENST00000473258 IGKV1-27A0A075B6S5 117 aa7.1□□□□□ -1.27
COL6A3-210ENST00000473258 A0A0J9YXV3 536 aa7.1□□□□□ -1.27
COL6A3-210ENST00000473258 YPEL4Q96NS1 127 aa7.1□□□□□ -1.27
COL6A3-210ENST00000473258 CACNA1SQ13698 1873 aa7.1□□□□□ -1.27
COL6A3-210ENST00000473258 C11orf86A6NJI1 115 aa7.1□□□□□ -1.27
COL6A3-210ENST00000473258 GATA3P23771 443 aa7.1□□□□□ -1.27
COL6A3-210ENST00000473258 CRIPAKQ8N1N5 446 aa7.1□□□□□ -1.27
COL6A3-210ENST00000473258 FXYD5Q96DB9 178 aa7.1□□□□□ -1.27
COL6A3-210ENST00000473258 IGHV3-53P01767 116 aa7.1□□□□□ -1.27
COL6A3-210ENST00000473258 CISD3P0C7P0 127 aa7.1□□□□□ -1.27
COL6A3-210ENST00000473258 GTF3C1Q12789 2109 aa7.09□□□□□ -1.27
COL6A3-210ENST00000473258 K7EM74 188 aa7.09□□□□□ -1.27
COL6A3-210ENST00000473258 C15orf32Q32M92 178 aa7.09□□□□□ -1.27
COL6A3-210ENST00000473258 TRAV7A0A075B6U4 112 aa7.09□□□□□ -1.27
COL6A3-210ENST00000473258 TRBV30A0A0K0K1B3 111 aa7.09□□□□□ -1.27
COL6A3-210ENST00000473258 C4orf26Q17RF5 130 aa7.09□□□□□ -1.27
COL6A3-210ENST00000473258 DEFB105AQ8NG35 78 aa7.09□□□□□ -1.27
COL6A3-210ENST00000473258 ZNF561-AS1K7EIQ3 104 aa7.09□□□□□ -1.27
COL6A3-210ENST00000473258 PRR20EP86478 221 aa7.09□□□□□ -1.27
COL6A3-210ENST00000473258 PRR20CP86479 221 aa7.09□□□□□ -1.27
COL6A3-210ENST00000473258 PRR20DP86480 221 aa7.09□□□□□ -1.27
COL6A3-210ENST00000473258 PRR20BP86481 221 aa7.09□□□□□ -1.27
COL6A3-210ENST00000473258 PRR20AP86496 221 aa7.09□□□□□ -1.27
COL6A3-210ENST00000473258 PIK3CD-AS1Q5SR53 167 aa7.09□□□□□ -1.27
COL6A3-210ENST00000473258 Q6ZQT7 251 aa7.09□□□□□ -1.27
COL6A3-210ENST00000473258 DAND5Q8N907 189 aa7.09□□□□□ -1.27
COL6A3-210ENST00000473258 TRPM6Q9BX84 2022 aa7.09□□□□□ -1.27
COL6A3-210ENST00000473258 TMEM89A2RUT3 159 aa7.09□□□□□ -1.28
COL6A3-210ENST00000473258 C5orf38Q86SI9 138 aa7.09□□□□□ -1.28
COL6A3-210ENST00000473258 NUP188Q5SRE5 1749 aa7.09□□□□□ -1.28
COL6A3-210ENST00000473258 DKK1O94907 266 aa7.08□□□□□ -1.28
COL6A3-210ENST00000473258 Q6JHZ5 121 aa7.08□□□□□ -1.28
COL6A3-210ENST00000473258 ZNF837Q96EG3 531 aaPredicted RBP7.08□□□□□ -1.28
COL6A3-210ENST00000473258 SPTA1P02549 2419 aa7.08□□□□□ -1.28
COL6A3-210ENST00000473258 PSPHP1O15172 72 aa7.08□□□□□ -1.28
COL6A3-210ENST00000473258 FRMD6-AS1P0C7T7 363 aa7.08□□□□□ -1.28
COL6A3-210ENST00000473258 ZFP36L1Q07352 338 aaKnown RBP7.08□□□□□ -1.28
COL6A3-210ENST00000473258 CSRP1P21291 193 aaKnown RBP7.08□□□□□ -1.28
COL6A3-210ENST00000473258 MRPL36Q9P0J6 103 aaKnown RBP7.08□□□□□ -1.28
COL6A3-210ENST00000473258 SPTBN2O15020 2390 aa7.07□□□□□ -1.28
COL6A3-210ENST00000473258 LOXP28300 417 aaPredicted RBP7.07□□□□□ -1.28
COL6A3-210ENST00000473258 RNF5Q99942 180 aa7.07□□□□□ -1.28
COL6A3-210ENST00000473258 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP7.07□□□□□ -1.28
COL6A3-210ENST00000473258 PSPNO60542 156 aa7.07□□□□□ -1.28
COL6A3-210ENST00000473258 C5P01031 1676 aa7.07□□□□□ -1.28
COL6A3-210ENST00000473258 TMEM14BQ9NUH8 114 aa7.07□□□□□ -1.28
COL6A3-210ENST00000473258 PYGO1Q9Y3Y4 419 aa7.07□□□□□ -1.28
COL6A3-210ENST00000473258 PRR4Q16378 134 aa7.07□□□□□ -1.28
COL6A3-210ENST00000473258 C2orf91Q6ZV80 131 aa7.07□□□□□ -1.28
COL6A3-210ENST00000473258 THAP8Q8NA92 274 aa7.07□□□□□ -1.28
COL6A3-210ENST00000473258 MON2Q7Z3U7 1717 aa7.07□□□□□ -1.28
COL6A3-210ENST00000473258 IGKV1-39P01597 117 aa7.07□□□□□ -1.28
COL6A3-210ENST00000473258 IGKV1D-39P04432 117 aa7.07□□□□□ -1.28
COL6A3-210ENST00000473258 Q6ZR03 302 aa7.07□□□□□ -1.28
COL6A3-210ENST00000473258 LRCOL1A6NCL2 159 aa7.06□□□□□ -1.28
COL6A3-210ENST00000473258 IGHV3-33P01772 117 aa7.06□□□□□ -1.28
COL6A3-210ENST00000473258 PTPRFP10586 1907 aa7.06□□□□□ -1.28
COL6A3-210ENST00000473258 MRPL53Q96EL3 112 aaKnown RBP7.06□□□□□ -1.28
COL6A3-210ENST00000473258 CACNA1GO43497 2377 aa7.06□□□□□ -1.28
COL6A3-210ENST00000473258 COL14A1Q05707 1796 aaKnown RBP7.06□□□□□ -1.28
COL6A3-210ENST00000473258 C3P01024 1663 aa7.06□□□□□ -1.28
COL6A3-210ENST00000473258 PCNX2A6NKB5 2137 aa7.06□□□□□ -1.28
COL6A3-210ENST00000473258 TRIAP1O43715 76 aa7.06□□□□□ -1.28
COL6A3-210ENST00000473258 LINC00205P59089 165 aa7.06□□□□□ -1.28
COL6A3-210ENST00000473258 MIAQ16674 131 aa7.06□□□□□ -1.28
COL6A3-210ENST00000473258 POLR2AP24928 1970 aaKnown RBP7.06□□□□□ -1.28
COL6A3-210ENST00000473258 MYO7BQ6PIF6 2116 aa7.06□□□□□ -1.28
COL6A3-210ENST00000473258 WNK3Q9BYP7 1800 aa7.06□□□□□ -1.28
COL6A3-210ENST00000473258 IGKV1-6A0A0C4DH72 117 aa7.06□□□□□ -1.28
COL6A3-210ENST00000473258 TOMM6Q96B49 74 aa7.06□□□□□ -1.28
COL6A3-210ENST00000473258 ZNF581Q9P0T4 197 aa7.06□□□□□ -1.28
COL6A3-210ENST00000473258 Q6ZT83 130 aa7.05□□□□□ -1.28
COL6A3-210ENST00000473258 ZNRF2Q8NHG8 242 aa7.05□□□□□ -1.28
COL6A3-210ENST00000473258 MIA3Q5JRA6 1907 aa7.05□□□□□ -1.28
COL6A3-210ENST00000473258 IGHV3-38A0A0C4DH36 116 aa7.05□□□□□ -1.28
COL6A3-210ENST00000473258 XCL1P47992 114 aa7.05□□□□□ -1.28
COL6A3-210ENST00000473258 MDS2Q8NDY4 140 aa7.05□□□□□ -1.28
COL6A3-210ENST00000473258 ZMAT4Q9H898 229 aa7.05□□□□□ -1.28
COL6A3-210ENST00000473258 XCL2Q9UBD3 114 aa7.05□□□□□ -1.28
COL6A3-210ENST00000473258 CDK5RAP2Q96SN8 1893 aa7.05□□□□□ -1.28
COL6A3-210ENST00000473258 TMEM223A0PJW6 202 aa7.05□□□□□ -1.28
COL6A3-210ENST00000473258 IGF2BP2-AS1Q96M15 143 aa7.05□□□□□ -1.28
COL6A3-210ENST00000473258 KIR2DL5BQ8NHK3 375 aa7.05□□□□□ -1.28
COL6A3-210ENST00000473258 CD164Q04900 197 aa7.04□□□□□ -1.28
COL6A3-210ENST00000473258 SCXQ7RTU7 201 aa7.04□□□□□ -1.28
COL6A3-210ENST00000473258 Q8N976 141 aa7.04□□□□□ -1.28
COL6A3-210ENST00000473258 ZNF71Q9NQZ8 489 aaPredicted RBP7.04□□□□□ -1.28
COL6A3-210ENST00000473258 IGHV4-4A0A075B6R2 117 aa7.04□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms