RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 MUC21Q5SSG8 566 aa11.5□□□□□ -0.57
USP40-212ENST00000473191 ABCA13Q86UQ4 5058 aa11.49□□□□□ -0.57
USP40-212ENST00000473191 IGHV1OR15-1A0A075B7D0 117 aa11.49□□□□□ -0.57
USP40-212ENST00000473191 RGS13O14921 159 aa11.49□□□□□ -0.57
USP40-212ENST00000473191 UBE2L3P68036 154 aaKnown RBP11.49□□□□□ -0.57
USP40-212ENST00000473191 C18orf15Q96N68 181 aa11.49□□□□□ -0.57
USP40-212ENST00000473191 MDFICQ9P1T7 246 aa11.49□□□□□ -0.57
USP40-212ENST00000473191 H3BNG1 76 aa11.48□□□□□ -0.57
USP40-212ENST00000473191 HMGB3O15347 200 aaKnown RBP11.48□□□□□ -0.57
USP40-212ENST00000473191 NMBP08949 121 aa11.48□□□□□ -0.57
USP40-212ENST00000473191 HYLS1Q96M11 299 aa11.48□□□□□ -0.57
USP40-212ENST00000473191 UPK3BQ9BT76 320 aa11.48□□□□□ -0.57
USP40-212ENST00000473191 KCNIP2Q9NS61 270 aa11.48□□□□□ -0.57
USP40-212ENST00000473191 DIRC3C9JPN6 131 aa11.47□□□□□ -0.57
USP40-212ENST00000473191 RAB2AP61019 212 aa11.47□□□□□ -0.57
USP40-212ENST00000473191 IBA57Q5T440 356 aaKnown RBP11.47□□□□□ -0.57
USP40-212ENST00000473191 SCGB1C1Q8TD33 95 aa11.47□□□□□ -0.57
USP40-212ENST00000473191 MRPS16Q9Y3D3 137 aaKnown RBP11.47□□□□□ -0.57
USP40-212ENST00000473191 ALG5Q9Y673 324 aa11.47□□□□□ -0.57
USP40-212ENST00000473191 DNAH5Q8TE73 4624 aa11.47□□□□□ -0.57
USP40-212ENST00000473191 IFNA5P01569 189 aa11.46□□□□□ -0.57
USP40-212ENST00000473191 ZNF266Q14584 549 aa11.46□□□□□ -0.57
USP40-212ENST00000473191 ST6GAL2Q96JF0 529 aa11.46□□□□□ -0.57
USP40-212ENST00000473191 RPH3ALQ9UNE2 315 aa11.46□□□□□ -0.57
USP40-212ENST00000473191 APOBP04114 4563 aaKnown RBP11.46□□□□□ -0.58
USP40-212ENST00000473191 RBAKDNA6NC62 111 aa11.45□□□□□ -0.58
USP40-212ENST00000473191 C16orf90A8MZG2 172 aa11.45□□□□□ -0.58
USP40-212ENST00000473191 SFTA3P0C7M3 94 aa11.45□□□□□ -0.58
USP40-212ENST00000473191 PET100P0DJ07 73 aa11.45□□□□□ -0.58
USP40-212ENST00000473191 CSN1S1P47710 185 aa11.45□□□□□ -0.58
USP40-212ENST00000473191 GNG5P63218 68 aa11.45□□□□□ -0.58
USP40-212ENST00000473191 FHL2Q14192 279 aa11.45□□□□□ -0.58
USP40-212ENST00000473191 KHDC3LQ587J8 217 aa11.45□□□□□ -0.58
USP40-212ENST00000473191 LYPD1Q8N2G4 141 aa11.45□□□□□ -0.58
USP40-212ENST00000473191 TVP23CQ96ET8 276 aa11.45□□□□□ -0.58
USP40-212ENST00000473191 ARPC5LQ9BPX5 153 aa11.45□□□□□ -0.58
USP40-212ENST00000473191 TRAV8-1A0A0A6YYK1 113 aa11.44□□□□□ -0.58
USP40-212ENST00000473191 PGPA6NDG6 321 aa11.44□□□□□ -0.58
USP40-212ENST00000473191 Q5BKY6 102 aa11.44□□□□□ -0.58
USP40-212ENST00000473191 Q6AWC8 147 aa11.44□□□□□ -0.58
USP40-212ENST00000473191 C8orf49Q96NF6 230 aa11.44□□□□□ -0.58
USP40-212ENST00000473191 MUC4Q99102 2169 aa11.44□□□□□ -0.58
USP40-212ENST00000473191 TRBV7-9A0A0J9YWB2 115 aa11.43□□□□□ -0.58
USP40-212ENST00000473191 F6UZH7 168 aa11.43□□□□□ -0.58
USP40-212ENST00000473191 PAX4O43316 350 aa11.43□□□□□ -0.58
USP40-212ENST00000473191 CRYBA4P53673 196 aa11.43□□□□□ -0.58
USP40-212ENST00000473191 ZNF415Q09FC8 603 aa11.43□□□□□ -0.58
USP40-212ENST00000473191 TMEM183BQ1AE95 376 aa11.43□□□□□ -0.58
USP40-212ENST00000473191 TMEM183AQ8IXX5 376 aa11.43□□□□□ -0.58
USP40-212ENST00000473191 ZNF479Q96JC4 524 aa11.43□□□□□ -0.58
USP40-212ENST00000473191 SGK494Q96LW2 274 aa11.43□□□□□ -0.58
USP40-212ENST00000473191 TNFRSF18Q9Y5U5 241 aa11.43□□□□□ -0.58
USP40-212ENST00000473191 GNRH2O43555 120 aa11.42□□□□□ -0.58
USP40-212ENST00000473191 TAS2R45P59539 299 aa11.42□□□□□ -0.58
USP40-212ENST00000473191 KRTAP10-2P60368 255 aa11.42□□□□□ -0.58
USP40-212ENST00000473191 GOLT1AQ6ZVE7 132 aa11.42□□□□□ -0.58
USP40-212ENST00000473191 OTORQ9NRC9 128 aa11.42□□□□□ -0.58
USP40-212ENST00000473191 NAGKQ9UJ70 344 aa11.42□□□□□ -0.58
USP40-212ENST00000473191 hCG_2014768A0A024R1R8 64 aa11.41□□□□□ -0.58
USP40-212ENST00000473191 ACOT6Q3I5F7 207 aaPredicted RBP11.41□□□□□ -0.58
USP40-212ENST00000473191 Q6ZNX1 250 aa11.41□□□□□ -0.58
USP40-212ENST00000473191 SPATA12Q7Z6I5 190 aa11.41□□□□□ -0.58
USP40-212ENST00000473191 OR10G4Q8NGN3 311 aa11.41□□□□□ -0.58
USP40-212ENST00000473191 OR10G9Q8NGN4 311 aa11.41□□□□□ -0.58
USP40-212ENST00000473191 OR10G7Q8NGN6 311 aa11.41□□□□□ -0.58
USP40-212ENST00000473191 HHLA3Q9XRX5 114 aa11.41□□□□□ -0.58
USP40-212ENST00000473191 ARL14EPLP0DKL9 152 aa11.4□□□□□ -0.58
USP40-212ENST00000473191 FUSP35637 526 aaKnown RBP eCLIP11.4□□□□□ -0.58
USP40-212ENST00000473191 LINC00315P59091 139 aa11.4□□□□□ -0.58
USP40-212ENST00000473191 TTC32Q5I0X7 151 aa11.4□□□□□ -0.58
USP40-212ENST00000473191 LYPD5Q6UWN5 251 aa11.4□□□□□ -0.58
USP40-212ENST00000473191 Q6ZRN7 208 aaPredicted RBP11.4□□□□□ -0.58
USP40-212ENST00000473191 HSD17B11Q8NBQ5 300 aa11.4□□□□□ -0.58
USP40-212ENST00000473191 PRO0255Q9UI72 69 aa11.4□□□□□ -0.58
USP40-212ENST00000473191 ICOSQ9Y6W8 199 aa11.4□□□□□ -0.58
USP40-212ENST00000473191 A0A1W2PPV4 95 aa11.39□□□□□ -0.59
USP40-212ENST00000473191 NXPH4O95158 308 aa11.39□□□□□ -0.59
USP40-212ENST00000473191 FAM159AQ6UWV7 190 aa11.39□□□□□ -0.59
USP40-212ENST00000473191 CMTM2Q8TAZ6 248 aa11.39□□□□□ -0.59
USP40-212ENST00000473191 SH3BGRL3Q9H299 93 aa11.39□□□□□ -0.59
USP40-212ENST00000473191 LENEPQ9Y5L5 61 aa11.39□□□□□ -0.59
USP40-212ENST00000473191 IGHV3-16A0A0C4DH30 117 aa11.38□□□□□ -0.59
USP40-212ENST00000473191 A0A1W2PPQ1 181 aa11.38□□□□□ -0.59
USP40-212ENST00000473191 SIVA1O15304 175 aa11.38□□□□□ -0.59
USP40-212ENST00000473191 TYMSP04818 313 aa11.38□□□□□ -0.59
USP40-212ENST00000473191 ZNF80P51504 273 aaPredicted RBP11.38□□□□□ -0.59
USP40-212ENST00000473191 PQLC2Q6ZP29 291 aa11.38□□□□□ -0.59
USP40-212ENST00000473191 TMED6Q8WW62 240 aa11.38□□□□□ -0.59
USP40-212ENST00000473191 RASL10AQ92737 203 aa11.38□□□□□ -0.59
USP40-212ENST00000473191 TRGV4A0A0C4DH28 118 aa11.37□□□□□ -0.59
USP40-212ENST00000473191 LOC100131303A0A0U1RQF7 123 aa11.37□□□□□ -0.59
USP40-212ENST00000473191 K7EQD1 137 aa11.37□□□□□ -0.59
USP40-212ENST00000473191 STAG3L2P0CL84 134 aa11.37□□□□□ -0.59
USP40-212ENST00000473191 STAG3L3P0CL85 134 aa11.37□□□□□ -0.59
USP40-212ENST00000473191 ATP6V0CP27449 155 aa11.37□□□□□ -0.59
USP40-212ENST00000473191 CDC34P49427 236 aaPredicted RBP11.37□□□□□ -0.59
USP40-212ENST00000473191 TDRG1Q3Y452 100 aa11.37□□□□□ -0.59
USP40-212ENST00000473191 C11orf21Q9P2W6 132 aa11.37□□□□□ -0.59
USP40-212ENST00000473191 TRGV11A0A075B6L2 103 aa11.36□□□□□ -0.59
USP40-212ENST00000473191 A0A1B0GVG6 124 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 135.3 ms