RNA–Protein interactions for RNA: ENST00000470167.1

COL3A1-205, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 628 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-205ENST00000470167 CCL13Q99616 98 aa3.85□□□□□ -1.79
COL3A1-205ENST00000470167 SLC50A1Q9BRV3 221 aa3.85□□□□□ -1.79
COL3A1-205ENST00000470167 LINC00597Q9H2U6 94 aa3.85□□□□□ -1.79
COL3A1-205ENST00000470167 Q9H3A6 140 aa3.85□□□□□ -1.79
COL3A1-205ENST00000470167 FGF22Q9HCT0 170 aa3.85□□□□□ -1.79
COL3A1-205ENST00000470167 CENPFP49454 3210 aa3.85□□□□□ -1.79
COL3A1-205ENST00000470167 NUP98P52948 1817 aa3.84□□□□□ -1.79
COL3A1-205ENST00000470167 TMSB15BA0A087X1C1 80 aa3.84□□□□□ -1.79
COL3A1-205ENST00000470167 TRAV8-3A0A0A6YYJ7 113 aa3.84□□□□□ -1.79
COL3A1-205ENST00000470167 A0A0B4J2C4 111 aa3.84□□□□□ -1.79
COL3A1-205ENST00000470167 C4orf51C9J302 202 aa3.84□□□□□ -1.79
COL3A1-205ENST00000470167 PEX7O00628 323 aa3.84□□□□□ -1.79
COL3A1-205ENST00000470167 RNASE2P10153 161 aaKnown RBP3.84□□□□□ -1.79
COL3A1-205ENST00000470167 MGST1P10620 155 aaKnown RBP3.84□□□□□ -1.79
COL3A1-205ENST00000470167 UBE2BP63146 152 aa3.84□□□□□ -1.79
COL3A1-205ENST00000470167 KLKP1Q107X0 134 aa3.84□□□□□ -1.79
COL3A1-205ENST00000470167 CLECL1Q8IZS7 167 aa3.84□□□□□ -1.79
COL3A1-205ENST00000470167 LINC00337Q8N6G1 96 aa3.84□□□□□ -1.79
COL3A1-205ENST00000470167 OPRPNQ99935 248 aaPredicted RBP3.84□□□□□ -1.79
COL3A1-205ENST00000470167 C6orf106Q9H6K1 298 aaPredicted RBP3.84□□□□□ -1.79
COL3A1-205ENST00000470167 Q9HAA7 133 aa3.84□□□□□ -1.79
COL3A1-205ENST00000470167 DOPEY1Q5JWR5 2465 aa3.84□□□□□ -1.8
COL3A1-205ENST00000470167 TNRC6CQ9HCJ0 1690 aaKnown RBP3.84□□□□□ -1.8
COL3A1-205ENST00000470167 CFAP54Q96N23 3096 aa3.84□□□□□ -1.8
COL3A1-205ENST00000470167 ANKRD36A6QL64 1941 aa3.83□□□□□ -1.8
COL3A1-205ENST00000470167 EXPH5Q8NEV8 1989 aa3.83□□□□□ -1.8
COL3A1-205ENST00000470167 PIGBOS1A0A0B4J2F0 54 aa3.83□□□□□ -1.8
COL3A1-205ENST00000470167 LOC107984156A0A0G2JMH3 177 aa3.83□□□□□ -1.8
COL3A1-205ENST00000470167 A0A1B0GWA3 101 aa3.83□□□□□ -1.8
COL3A1-205ENST00000470167 LINC01549A6NIU2 74 aa3.83□□□□□ -1.8
COL3A1-205ENST00000470167 H3BVH4 76 aa3.83□□□□□ -1.8
COL3A1-205ENST00000470167 LTAP01374 205 aa3.83□□□□□ -1.8
COL3A1-205ENST00000470167 NCBP2P52298 156 aaKnown RBP eCLIP3.83□□□□□ -1.8
COL3A1-205ENST00000470167 CCL23P55773 120 aa3.83□□□□□ -1.8
COL3A1-205ENST00000470167 KIAA0087Q14695 138 aa3.83□□□□□ -1.8
COL3A1-205ENST00000470167 ATXN8Q156A1 80 aa3.83□□□□□ -1.8
COL3A1-205ENST00000470167 KISS1Q15726 138 aa3.83□□□□□ -1.8
COL3A1-205ENST00000470167 ZNF876PQ49A33 203 aa3.83□□□□□ -1.8
COL3A1-205ENST00000470167 Q6YL49 198 aa3.83□□□□□ -1.8
COL3A1-205ENST00000470167 ZNF497Q6ZNH5 498 aa3.83□□□□□ -1.8
COL3A1-205ENST00000470167 C7orf65Q6ZTY9 151 aa3.83□□□□□ -1.8
COL3A1-205ENST00000470167 LYPD6Q86Y78 171 aa3.83□□□□□ -1.8
COL3A1-205ENST00000470167 ARL17AQ8IVW1 177 aa3.83□□□□□ -1.8
COL3A1-205ENST00000470167 ZNF525Q8N782 197 aa3.83□□□□□ -1.8
COL3A1-205ENST00000470167 SLC25A29Q8N8R3 303 aa3.83□□□□□ -1.8
COL3A1-205ENST00000470167 DIRC1Q969H9 104 aa3.83□□□□□ -1.8
COL3A1-205ENST00000470167 RNF185Q96GF1 192 aa3.83□□□□□ -1.8
COL3A1-205ENST00000470167 TAS2R4Q9NYW5 299 aa3.83□□□□□ -1.8
COL3A1-205ENST00000470167 LINC00474Q9P2X8 69 aa3.83□□□□□ -1.8
COL3A1-205ENST00000470167 THSD7AQ9UPZ6 1657 aa3.83□□□□□ -1.8
COL3A1-205ENST00000470167 ITPR3Q14573 2671 aa3.82□□□□□ -1.8
COL3A1-205ENST00000470167 HCFC1P51610 2035 aa3.82□□□□□ -1.8
COL3A1-205ENST00000470167 TRAV13-2A0A0B4J235 113 aa3.82□□□□□ -1.8
COL3A1-205ENST00000470167 TRAV3A0A0B4J244 114 aa3.82□□□□□ -1.8
COL3A1-205ENST00000470167 IGHV3OR16-9A0A0B4J2B5 98 aa3.82□□□□□ -1.8
COL3A1-205ENST00000470167 TEX49A0A1B0GTD5 131 aa3.82□□□□□ -1.8
COL3A1-205ENST00000470167 E7EQL1 145 aa3.82□□□□□ -1.8
COL3A1-205ENST00000470167 XCL1P47992 114 aa3.82□□□□□ -1.8
COL3A1-205ENST00000470167 MP68P56378 58 aa3.82□□□□□ -1.8
COL3A1-205ENST00000470167 Q1T7F1 81 aa3.82□□□□□ -1.8
COL3A1-205ENST00000470167 GDF5OSQ5U4N7 250 aa3.82□□□□□ -1.8
COL3A1-205ENST00000470167 Q6JHZ5 121 aa3.82□□□□□ -1.8
COL3A1-205ENST00000470167 SLC48A1Q6P1K1 146 aa3.82□□□□□ -1.8
COL3A1-205ENST00000470167 MDP1Q86V88 176 aa3.82□□□□□ -1.8
COL3A1-205ENST00000470167 DAND5Q8N907 189 aa3.82□□□□□ -1.8
COL3A1-205ENST00000470167 C11orf72Q8NBR9 251 aa3.82□□□□□ -1.8
COL3A1-205ENST00000470167 LINC00476Q8WZB0 136 aa3.82□□□□□ -1.8
COL3A1-205ENST00000470167 ZNF524Q96C55 264 aa3.82□□□□□ -1.8
COL3A1-205ENST00000470167 ZNF414Q96IQ9 312 aa3.82□□□□□ -1.8
COL3A1-205ENST00000470167 HIST1H4GQ99525 98 aa3.82□□□□□ -1.8
COL3A1-205ENST00000470167 XCL2Q9UBD3 114 aa3.82□□□□□ -1.8
COL3A1-205ENST00000470167 FAM208BQ5VWN6 2430 aa3.82□□□□□ -1.8
COL3A1-205ENST00000470167 PLXNA3P51805 1871 aa3.81□□□□□ -1.8
COL3A1-205ENST00000470167 PRUNE2Q8WUY3 3088 aa3.81□□□□□ -1.8
COL3A1-205ENST00000470167 IGKV1D-8A0A087WSZ0 117 aa3.81□□□□□ -1.8
COL3A1-205ENST00000470167 LOC100131303A0A0U1RQF7 123 aa3.81□□□□□ -1.8
COL3A1-205ENST00000470167 LOC105378220A0A1B0GUY1 285 aaPredicted RBP3.81□□□□□ -1.8
COL3A1-205ENST00000470167 COX7A2LO14548 114 aa3.81□□□□□ -1.8
COL3A1-205ENST00000470167 NXPH4O95158 308 aa3.81□□□□□ -1.8
COL3A1-205ENST00000470167 IGKV1D-33P01593 117 aa3.81□□□□□ -1.8
COL3A1-205ENST00000470167 IGKV1-33P01594 117 aa3.81□□□□□ -1.8
COL3A1-205ENST00000470167 IGKV1-5P01602 117 aa3.81□□□□□ -1.8
COL3A1-205ENST00000470167 IL9P15248 144 aa3.81□□□□□ -1.8
COL3A1-205ENST00000470167 CKS2P33552 79 aa3.81□□□□□ -1.8
COL3A1-205ENST00000470167 IFI27P40305 119 aaPredicted RBP3.81□□□□□ -1.8
COL3A1-205ENST00000470167 LINC00313P59037 77 aa3.81□□□□□ -1.8
COL3A1-205ENST00000470167 NANOS3P60323 173 aaKnown RBP3.81□□□□□ -1.8
COL3A1-205ENST00000470167 PRR3P79522 188 aaKnown RBP3.81□□□□□ -1.8
COL3A1-205ENST00000470167 IGFL4Q6B9Z1 124 aa3.81□□□□□ -1.8
COL3A1-205ENST00000470167 NOTCH2NLQ7Z3S9 236 aa3.81□□□□□ -1.8
COL3A1-205ENST00000470167 SMCR5Q8TEV8 140 aa3.81□□□□□ -1.8
COL3A1-205ENST00000470167 SPTSSAQ969W0 71 aa3.81□□□□□ -1.8
COL3A1-205ENST00000470167 ZNF714Q96N38 554 aa3.81□□□□□ -1.8
COL3A1-205ENST00000470167 MRPL35Q9NZE8 188 aaKnown RBP3.81□□□□□ -1.8
COL3A1-205ENST00000470167 MYO18BQ8IUG5 2567 aa3.81□□□□□ -1.8
COL3A1-205ENST00000470167 LTBP1Q14766 1721 aa3.81□□□□□ -1.8
COL3A1-205ENST00000470167 BRCA2P51587 3418 aa3.8□□□□□ -1.8
COL3A1-205ENST00000470167 RALGAPA2Q2PPJ7 1873 aa3.8□□□□□ -1.8
COL3A1-205ENST00000470167 UBR3Q6ZT12 1888 aa3.8□□□□□ -1.8
COL3A1-205ENST00000470167 IGKV2D-26A0A0A0MRZ7 120 aa3.8□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms